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OryGenesDB: A database for rice reverse genetics : [P355]

Droc Gaëtan, Ruiz Manuel, Larmande Pierre, Pereira Andy, Piffanelli Pietro, Morel Jean-Benoit, Dievart Anne, Courtois Brigitte, Guiderdoni Emmanuel, Perin Christophe. 2005. OryGenesDB: A database for rice reverse genetics : [P355]. In : 5th International Rice Genetics Symposium (A platform for exploring developments in rice genetics and their applications) and 3rd International Symposium of Rice Functional Genomics. Abstract. IRRI. Manila : IRRI, Résumé, p. 234. International Rice Genetics Symposium. 5, Manille, Philippines, 19 November 2005/23 November 2005.

Poster
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Abstract : Insertional mutant databases containing Flanking Sequence Tags (FSTs) are becoming key resources for plant functional genomics. We have developed OryGenesDB (http://orygenesdb.cirad.fr/), a database dedicated to rice reverse genetics. Insertion mutants of rice genes are catalogued by Flanking Sequence Tag (FST) information that can be readily accessed by this database. Our database presently contains 44166 FSTs generated by most of the rice insertional mutagenesis projects. The OryGenesDB genome browser is based on the powerful Generic Genome Browser (GGB) developed in the framework of the Generic Model Organism Project (GMOD). The main interface of our web site displays search and analysis interfaces to look for insertions in any candidate gene of interest. Several starting points can be used to exhaustively retrieve the insertions positions and associated genomic information using blast, keywords or gene name search. The toolbox integrated in our database also includes an "anchoring option" that allows immediate mapping and visualization of up to 50 nucleic acid sequences in the rice Genome Browser of OryGenesDB. As a first step toward plant comparative genomics, we have linked the rice and Arabidopsis whole genome using all the predicted pairs of orthologs by best BLAST mutual hit (BBMH) connectors. (Résumé d'auteur)

Mots-clés Agrovoc : Oryza

Classification Agris : F30 - Plant genetics and breeding
C30 - Documentation and information

Auteurs et affiliations

  • Droc Gaëtan, CIRAD-AMIS-BIOTROP (FRA)
  • Ruiz Manuel, CIRAD-AMIS-UMR PIA (FRA) ORCID: 0000-0001-8153-276X
  • Larmande Pierre, CNRS (FRA)
  • Pereira Andy, PRI (NLD)
  • Piffanelli Pietro, CIRAD-AMIS-UMR PIA (FRA)
  • Morel Jean-Benoit, INRA (FRA)
  • Dievart Anne, INRA (FRA) ORCID: 0000-0001-9460-4638
  • Courtois Brigitte, CIRAD-AMIS-UMR PIA (FRA) ORCID: 0000-0003-2118-7102
  • Guiderdoni Emmanuel, CIRAD-AMIS-UMR PIA (FRA)
  • Perin Christophe, CIRAD-AMIS-UMR PIA (FRA)

Autres liens de la publication

Source : Cirad - Agritrop (https://agritrop.cirad.fr/550292/)

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