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The genome of Theobroma cacao

Argout Xavier, Salse Jérôme, Aury Jean-Marc, Guiltinan Mark J., Droc Gaëtan, Gouzy Jérôme, Allègre Mathilde, Chaparro Christian, Legavre Thierry, Maximova Siela N., Abrouk Michael, Murat Florent, Fouet Olivier, Poulain Julie, Ruiz Manuel, Roguet Yolande, Rodier-Goud Marguerite, Barbosa-Neto Jose Fernandes, Sabot François, Kudrna Dave, Ammiraju Jetty Siva S., Schuster Stephan C., Carlson John E., Sallet Erika, Schiex Thomas, Dievart Anne, Kramer Melissa, Gelley Laura, Shi Zi, Bérard Aurélie, Viot Christopher, Boccara Michel, Risterucci Ange-Marie, Guignon Valentin, Sabau Xavier, Axtell Michael J., Ma Zhaorong, Zhang Yufan, Brown Spencer, Bourge Mickael, Golser Wolfgang, Song Xiang, Clément Didier, Rivallan Ronan, Tahi G.Mathias, Akaza Joseph Moroh, Pitollat Bertrand, Gramacho Karina Peres, D'Hont Angélique, Brunel Dominique, Infante Diogenes, Kébé Ismael S., Costet Pierre, Wing Rod A., Mc Combie William Richard, Guiderdoni Emmanuel, Quetier Francis, Panaud Olivier, Wincker Patrick, Bocs Stéphanie, Lanaud Claire. 2011. The genome of Theobroma cacao. Nature Genetics, 43 (2) : pp. 101-108.

Journal article ; Article de revue à facteur d'impact
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Url - jeu de données : http://www.ebi.ac.uk/ena/data/view/PRJEB14326

Quartile : Outlier, Sujet : GENETICS & HEREDITY

Liste HCERES des revues (en SHS) : oui

Thème(s) HCERES des revues (en SHS) : Psychologie-éthologie-ergonomie

Abstract : We sequenced and assembled the draft genome of #Theobroma cacao#, an economically important tropical-fruit tree crop that is the source of chocolate. This assembly corresponds to 76% of the estimated genome size and contains almost all previously described genes, with 82% of these genes anchored on the 10 #T. cacao# chromosomes. Analysis of this sequence information highlighted specific expansion of some gene families during evolution, for example, flavonoid-related genes. It also provides a major source of candidate genes for #T. cacao# improvement. Based on the inferred paleohistory of the #T. cacao# genome, we propose an evolutionary scenario whereby the ten #T. cacao# chromosomes were shaped from an ancestor through eleven chromosome fusions. (Résumé d'auteur)

Mots-clés Agrovoc : Theobroma cacao

Classification Agris : F30 - Plant genetics and breeding
F70 - Plant taxonomy and geography

Champ stratégique Cirad : Axe 1 (2005-2013) - Intensification écologique

Auteurs et affiliations

  • Argout Xavier, CIRAD-BIOS-UMR DAP (FRA) ORCID: 0000-0002-0100-5511
  • Salse Jérôme, INRA (FRA)
  • Aury Jean-Marc, Institut de génomique (FRA)
  • Guiltinan Mark J., Pennsylvania State University (USA)
  • Droc Gaëtan, CIRAD-BIOS-UMR DAP (FRA)
  • Gouzy Jérôme, INRA (FRA)
  • Allègre Mathilde, CIRAD-BIOS-UMR DAP (FRA)
  • Chaparro Christian, CNRS (FRA)
  • Legavre Thierry, CIRAD-BIOS-UMR DAP (FRA)
  • Maximova Siela N., Pennsylvania State University (USA)
  • Abrouk Michael, INRA (FRA)
  • Murat Florent, INRA (FRA)
  • Fouet Olivier, CIRAD-BIOS-UMR DAP (FRA) ORCID: 0000-0001-8547-1474
  • Poulain Julie, Institut de génomique (FRA)
  • Ruiz Manuel, CIRAD-BIOS-UMR DAP (FRA) ORCID: 0000-0001-8153-276X
  • Roguet Yolande
  • Rodier-Goud Marguerite, CIRAD-BIOS-UMR DAP (FRA)
  • Barbosa-Neto Jose Fernandes, CNRS (FRA)
  • Sabot François, CNRS (FRA)
  • Kudrna Dave, University of Arizona (USA)
  • Ammiraju Jetty Siva S., University of Arizona (USA)
  • Schuster Stephan C., Pennsylvania State University (USA)
  • Carlson John E., Pennsylvania State University (USA)
  • Sallet Erika, INRA (FRA)
  • Schiex Thomas, INRA (FRA)
  • Dievart Anne, INRA (FRA) ORCID: 0000-0001-9460-4638
  • Kramer Melissa, Cold Spring Harbor (USA)
  • Gelley Laura, Cold Spring Harbor (USA)
  • Shi Zi, Pennsylvania State University (USA)
  • Bérard Aurélie, INRA (FRA)
  • Viot Christopher, CIRAD-BIOS-UMR DAP (FRA) ORCID: 0000-0001-6321-4741
  • Boccara Michel, CIRAD-BIOS-UMR DAP (TTO)
  • Risterucci Ange-Marie, CIRAD-BIOS-UMR DAP (FRA)
  • Guignon Valentin
  • Sabau Xavier, CIRAD-BIOS-UMR DAP (FRA)
  • Axtell Michael J., Pennsylvania State University (USA)
  • Ma Zhaorong, Pennsylvania State University (USA)
  • Zhang Yufan, Cold Spring Harbor (USA)
  • Brown Spencer, CNRS (FRA)
  • Bourge Mickael, CNRS (FRA)
  • Golser Wolfgang, University of Arizona (USA)
  • Song Xiang, University of Arizona (USA)
  • Clément Didier, CIRAD-BIOS-UMR DAP (BRA) ORCID: 0000-0002-7602-6472
  • Rivallan Ronan, CIRAD-BIOS-UMR DAP (FRA)
  • Tahi G.Mathias, CNRA (CIV)
  • Akaza Joseph Moroh, CNRA (CIV)
  • Pitollat Bertrand, CIRAD-BIOS-UMR DAP (FRA)
  • Gramacho Karina Peres, CEPLAC (BRA)
  • D'Hont Angélique, CIRAD-BIOS-UMR DAP (FRA)
  • Brunel Dominique, INRA (FRA)
  • Infante Diogenes, IDEA (VEN)
  • Kébé Ismael S., CNRA (CIV)
  • Costet Pierre, Chocolaterie Valrhona (FRA)
  • Wing Rod A., University of Arizona (USA)
  • Mc Combie William Richard, Cold Spring Harbor (USA)
  • Guiderdoni Emmanuel, CIRAD-BIOS-UMR DAP (FRA)
  • Quetier Francis, Université d'Evry Val d'Essonne (FRA)
  • Panaud Olivier, CNRS (FRA)
  • Wincker Patrick, Institut de génomique (FRA)
  • Bocs Stéphanie, CIRAD-BIOS-UMR DAP (FRA) ORCID: 0000-0001-7850-4426
  • Lanaud Claire, CIRAD-BIOS-UMR DAP (FRA) ORCID: 0000-0001-6411-7310

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Source : Cirad - Agritrop (https://agritrop.cirad.fr/558337/)

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