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Chado Controller : Advanced annotation management with a community annotation system

Guignon Valentin, Droc Gaëtan, Alaux Michael, Baurens Franc-Christophe, Garsmeur Olivier, Poiron Claire, Carver Timothy L.W., Rouard Mathieu, Bocs Stéphanie. 2012. Chado Controller : Advanced annotation management with a community annotation system. Bioinformatics, 28 (7) : pp. 1054-1056.

Journal article ; Article de revue à facteur d'impact
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Quartile : Outlier, Sujet : MATHEMATICAL & COMPUTATIONAL BIOLOGY / Quartile : Q1, Sujet : BIOCHEMICAL RESEARCH METHODS / Quartile : Q1, Sujet : BIOTECHNOLOGY & APPLIED MICROBIOLOGY

Abstract : Summary: We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional annotation controls) and stores versions of annotation for all modified features. The Chado controller uses PostgreSQL and Perl. Availability: The Chado Controller package is available for download at http://www.gnpannot.org/content/chado-controller and runs on any Unix-like operating system, and documentation is available at http://www.gnpannot.org/content/chado-controller-doc The system can be tested using the GNPAnnot Sandbox at http:// www.gnpannot.org/content/gnpannot-sandbox-form. (Résumé d'auteur)

Mots-clés Agrovoc : Système d'information, Banque de gènes, Application des ordinateurs, Génome

Mots-clés complémentaires : Séquencage

Classification Agris : U30 - Research methods
F30 - Plant genetics and breeding
C30 - Documentation and information

Champ stratégique Cirad : Hors axes (2005-2013)

Auteurs et affiliations

  • Guignon Valentin, Bioversity International (FRA)
  • Droc Gaëtan, CIRAD-BIOS-UMR AGAP (FRA)
  • Alaux Michael, INRA (FRA)
  • Baurens Franc-Christophe, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0002-5219-8771
  • Garsmeur Olivier, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-8869-3689
  • Poiron Claire, UM2 (FRA)
  • Carver Timothy L.W., Wellcome Trust Sanger Institute (GBR)
  • Rouard Mathieu, Bioversity International (FRA)
  • Bocs Stéphanie, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-7850-4426

Autres liens de la publication

Source : Cirad - Agritrop (https://agritrop.cirad.fr/563749/)

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