A new insight in the nuclear and cytoplasmic diversity of T.Cacao: Consequences for the T. Cacao classification

Boccara Michel, Fouet Olivier, Argout Xavier, Allègre Mathilde, Pot David, Motilal Lambert A., Lachenaud Philippe, Thévenin Jean-Marc, Zhang Dapeng, Umaharan Pathmanathan, Loor Solorzano Rey Gaston, Lanaud Claire. 2012. A new insight in the nuclear and cytoplasmic diversity of T.Cacao: Consequences for the T. Cacao classification. In : 17th Conférence Internationale sur la Recherche Cacaoyère, Yaounde, Cameroun, 15 - 20 Octobre 2012. COPAL. s.l. : s.n., Résumé, 1 p. Conférence Internationale sur la Recherche Cacaoyère. 17, Yaoundé, Cameroun, 15 October 2012/20 October 2012.

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Abstract : An extended diversity study was carried out on a collection of 650T. cacao accessions representing the different geographic origins of native cocoa populations as well as cultivated populations. These populations were genotyped with 837 SNP markers defined in genes with a putative known function. Classical genetic parameters were calculated to characterize the diversity existing inside and between populations, highlighting a classification of the T. cacao species in three main genetic groups. SNP alleles, specific to some populations could be identified. A cytoplasmic diversity, based on SNP identified in chloroplastic and mitochondrial genomes, also allowed for a refinement of the T. cacao classification. An estimation of linkage disequilibrium, reflecting the extend of physical linkage conserved between markers and genetic mixing was made in each population. In parallel with the exploitation of linkage disequilibrium as a genome mapping approach, the detection of outlying loci concerning genetic differentiation provides a complementary strategy for identifying genome regions and candidate genes related to adaptive traits. This strategy was applied to the set of SNP presented in this study considering the genetic structure previously highlighted. Some SNP markers located in the vicinity of annotated genes, exhibited diversity patterns consistent with evidence of selection events, suggesting their potential interest to monitor breeding efforts for adaptive traits suchas disease resistance or environmental changes. (Résumé d'auteur)

Classification Agris : F30 - Plant genetics and breeding
H20 - Plant diseases

Auteurs et affiliations

  • Boccara Michel, CIRAD-BIOS-UMR AGAP (TTO)
  • Fouet Olivier, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-8547-1474
  • Argout Xavier, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0002-0100-5511
  • Allègre Mathilde
  • Pot David, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-6144-8448
  • Motilal Lambert A., UWI (TTO)
  • Lachenaud Philippe, CIRAD-BIOS-UPR Bioagresseurs (GUF)
  • Thévenin Jean-Marc, CIRAD-BIOS-UPR Bioagresseurs (GUF)
  • Zhang Dapeng, USDA (USA)
  • Umaharan Pathmanathan
  • Loor Solorzano Rey Gaston, INIAP (ECU)
  • Lanaud Claire, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-6411-7310

Source : Cirad - Agritrop (

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