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The banana genome hub

Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2013. The banana genome hub. Database, 2013 (bat035), 14 p.

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Quartile : Outlier, Sujet : MATHEMATICAL & COMPUTATIONAL BIOLOGY

Abstract : Banana is one of the world's favorite fruits and one of the most important crops for developing countries. The banana reference genome sequence (Musa acuminata) was recently released. Given the taxonomic position of Musa, the completed genomic sequence has particular comparative value to provide fresh insights about the evolution of the monocotyledons. The study of the banana genome has been enhanced by a number of tools and resources that allows harnessing its sequence. First, we set up essential tools such as a Community Annotation System, phylogenomics resources and metabolic pathways. Then, to support post-genomic efforts, we improved banana existing systems (e.g. web front end, query builder), we integrated available Musa data into generic systems (e.g. markers and genetic maps, synteny blocks), we have made interoperable with the banana hub, other existing systems containing Musa data (e.g. transcriptomics, rice reference genome, workflow manager) and finally, we generated new results from sequence analyses (e.g. SNP and polymorphism analysis). Several uses cases illustrate how the Banana Genome Hub can be used to study gene families. Overall, with this collaborative effort, we discuss the importance of the interoperability toward data integration between existing information systems. (Résumé d'auteur)

Mots-clés Agrovoc : Musa, Musa acuminata, Génome, Système d'information, Amélioration des plantes, Recherche agronomique, Banque de données, Génie génétique, Oryza sativa

Classification Agris : F30 - Plant genetics and breeding
C30 - Documentation and information

Champ stratégique Cirad : Axe 1 (2005-2013) - Intensification écologique

Auteurs et affiliations

  • Droc Gaëtan, CIRAD-BIOS-UMR AGAP (FRA)
  • Larivière Delphine, Montpellier SupAgro (FRA)
  • Guignon Valentin, Bioversity International (FRA)
  • Yahiaoui Nabila, CIRAD-BIOS-UMR AGAP (FRA)
  • This Dominique, Montpellier SupAgro (FRA)
  • Garsmeur Olivier, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-8869-3689
  • Dereeper Alexis, IRD (FRA)
  • Hamelin Chantal, CIRAD-BIOS-UMR AGAP (FRA)
  • Argout Xavier, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0002-0100-5511
  • Dufayard Jean-François, CIRAD-BIOS-UMR AGAP (FRA)
  • Lengellé Juliette
  • Baurens Franc-Christophe, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0002-5219-8771
  • Cenci Alberto, IRD (FRA)
  • Pitollat Bertrand, CIRAD-BIOS-UMR AGAP (FRA)
  • D'Hont Angélique, CIRAD-BIOS-UMR AGAP (FRA)
  • Ruiz Manuel, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-8153-276X
  • Rouard Mathieu, Bioversity International (FRA)
  • Bocs Stéphanie, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-7850-4426

Source : Cirad - Agritrop (https://agritrop.cirad.fr/569139/)

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