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EucaMaps: linking genetic maps and associated QTLs to the Eucalyptus grandis genome

Gion Jean-Marc, Chaumeil Philippe, Plomion Christophe. 2015. EucaMaps: linking genetic maps and associated QTLs to the Eucalyptus grandis genome. Tree Genetics and Genomes, 11 (795), 7 p.

Journal article ; Article de revue à facteur d'impact
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575596.pdf

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Quartile : Q1, Sujet : HORTICULTURE / Quartile : Q1, Sujet : FORESTRY / Quartile : Q3, Sujet : GENETICS & HEREDITY

Abstract : EucaMaps is a web-based application that provides genetic linkage maps of Eucalyptus and Corymbia species, their orthologous relationships and the position of 267 published QTLs, hyperlinked to the Eucalyptus grandis genome sequence of BRASUZ1. EucaMaps makes an ideal springboard to relate results on the genetic architecture of several quantitative traits with genomic information using the circular vizualization tool of Circos. Five classes of QTLs (growth, wood quality, tolerance to biotic and abiotic stresses, leaf chemicals, rooting ability) are presented in this web-based application providing a broad overview of major QTL regions in the seven species considered. (Résumé d'auteur)

Mots-clés Agrovoc : Eucalyptus grandis, Eucalyptus, Myrtaceae, Gène, Génome, Sélection, Bioinformatique, Locus des caractères quantitatifs, Carte génétique, Logiciel, Internet

Mots-clés complémentaires : Corymbia, QTL

Classification Agris : F30 - Plant genetics and breeding
U40 - Surveying methods
C30 - Documentation and information

Champ stratégique Cirad : Axe 1 (2014-2018) - Agriculture écologiquement intensive

Auteurs et affiliations

  • Gion Jean-Marc, CIRAD-BIOS-UMR AGAP (FRA)
  • Chaumeil Philippe, INRA (FRA)
  • Plomion Christophe, INRA (FRA)

Source : Cirad - Agritrop (https://agritrop.cirad.fr/575596/)

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