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Using TropGeneDB: a database containing data on molecular markers, QTLs, maps, genotypes, and phenotypes for tropical crops

Ruiz Manuel, Sempere Guilhem, Hamelin Chantal. 2017. Using TropGeneDB: a database containing data on molecular markers, QTLs, maps, genotypes, and phenotypes for tropical crops. In : Plant genomics databases: methods and protocols. Van Dijk Aalt D.J. (ed.). New York : Springer [Etats-Unis], pp. 161-172. (Methods in Molecular Biology, 1533) ISBN 978-1-4939-6656-1

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Abstract : TropGeneDB (http://tropgenedb.cirad.fr) is a web database that manages genomic, genetic, and phenotypic information on tropical crops. It is organized on a crop basis with currently nine public modules: banana, cocoa, coconut, coffee, cotton, oil palm, rice, rubber tree, and sugarcane. TropGeneDB contains data on molecular markers, quantitative trait loci (QTLs), genetic and physical maps, genotyping and phenotyping studies, and information on genetic resources (geographic origin, parentage, collection). Crop-specific web interfaces have been designed to allow quick consultations as well as personalized complex queries. (Résumé d'auteur)

Mots-clés Agrovoc : Banque de données, Marqueur génétique, Système d'information, Internet, Phénotype, Génotype, Plante de culture, Zone tropicale, Ressource génétique végétale, Locus des caractères quantitatifs, Carte génétique, Gène, Distribution géographique, Oryza sativa, Cocos nucifera, Coffea, Elaeis guineensis, Hevea brasiliensis, Saccharum officinarum, Gossypium, Zea mays, Theobroma cacao

Mots-clés géographiques Agrovoc : Monde

Mots-clés complémentaires : QTL

Classification Agris : F30 - Plant genetics and breeding
C30 - Documentation and information

Champ stratégique Cirad : Axe 1 (2014-2018) - Agriculture écologiquement intensive

Auteurs et affiliations

  • Ruiz Manuel, CIRAD-BIOS-UMR AGAP (COL) ORCID: 0000-0001-8153-276X
  • Sempere Guilhem, CIRAD-BIOS-UMR INTERTRYP (FRA)
  • Hamelin Chantal, CIRAD-BIOS-UMR AGAP (FRA)

Autres liens de la publication

Source : Cirad-Agritrop (https://agritrop.cirad.fr/583327/)

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