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Genome-wide analysis of the barley non-specific lipid transfer protein gene family

Zhang Mengyue, Kim Yujin, Zong Jie, Lin Hong, Dievart Anne, Li Huanjun, Zhang Dabing, Liang Wanqi. 2019. Genome-wide analysis of the barley non-specific lipid transfer protein gene family. Crop Journal, 7 (1) : pp. 65-76.

Journal article ; Article de recherche ; Article de revue à facteur d'impact Revue en libre accès total
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Quartile : Q1, Sujet : AGRONOMY / Quartile : Q1, Sujet : PLANT SCIENCES

Abstract : Non-specific lipid transfer proteins (nsLTPs) are small, basic proteins that are characterized by an eight-cysteine motif. The biological functions of these proteins have been reported to involve plant reproduction and biotic or abiotic stress response. With the completion of the barley genome sequence, a genome-wide analysis of nsLTPs in barley (Hordeum vulgare L.) (HvLTPs) will be helpful for understanding the function of nsLTPs in plants. We performed a genome-wide analysis of the nsLTP gene family in barley and identified 70 nsLTP genes, which can be divided into five types (1, 2, C, D, and G). Each type of nsLTPs shares similar exon and intron gene structures. Expression analysis showed that barley nsLTPs have diverse expression patterns, revealing their various roles. Our results shed light on the phylogenetic relationships and potential functions of barley nsLTPs and will be useful for future studies of barley development and molecular breeding.

Classification Agris : F30 - Plant genetics and breeding
F60 - Plant physiology and biochemistry

Champ stratégique Cirad : CTS 1 (2019-) - Biodiversité

Auteurs et affiliations

  • Zhang Mengyue, Shanghai Jiaotong University (CHN)
  • Kim Yujin, Shanghai Jiaotong University (CHN)
  • Zong Jie, Shanghai Jiaotong University (CHN)
  • Lin Hong, Shanghai Jiaotong University (CHN)
  • Dievart Anne, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-9460-4638
  • Li Huanjun, Shanghai Jiaotong University (CHN)
  • Zhang Dabing, Shanghai Jiaotong University (CHN)
  • Liang Wanqi, Shanghai Jiaotong University (CHN) - auteur correspondant

Source : Cirad-Agritrop (https://agritrop.cirad.fr/589427/)

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