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New insights on spatial genetic structure and diversity of Coffea canephora (Rubiaceae) in Upper Guinea based on old herbaria

Labouisse Jean-Pierre, Cubry Philippe, Austerlitz Frédéric, Rivallan Ronan, Nguyen Hong Anh. 2020. New insights on spatial genetic structure and diversity of Coffea canephora (Rubiaceae) in Upper Guinea based on old herbaria. Plant Ecology and Evolution, 153 (1) : pp. 82-100.

Journal article ; Article de recherche ; Article de revue à facteur d'impact Revue en libre accès total
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Abstract : Backgrounds and aims – Previous studies showed that robusta coffee (Coffea canephora Pierre ex A.Froehner), one of the two cultivated coffee species worldwide, can be classified in two genetic groups: the Guinean group originating in Upper Guinea and the Congolese group in Lower Guinea and Congolia. Although C. canephora of the Guinean group is an important resource for genetic improvement of robusta coffee, its germplasm is under-represented in ex situ gene banks and its genetic diversity and population structure have not yet been investigated. Methods – To overcome the limitations of living collections, we explored old herbarium specimens collected in Guinea and Côte d'Ivoire and conserved at the Muséum National d'Histoire Naturelle, Paris. First, we reviewed the history of collection missions in both countries and how the C. canephora herbaria from the Muséum were assembled. Then, using 23 nuclear microsatellite markers, factorial and model-based Bayesian analyses, we investigated the genetic diversity of 126 specimens and 36 controls, analysed their distribution among the Congolese and Guinean groups, and estimated admixture proportions for each individual. Key results – For the first time, we detected population genetic structure within the Guinean group of C. canephora. The Guinean genotypes can be assigned to five sub-groups with distinct geographic distribution, especially in Guinea where two sub-groups (Maclaudii and Gamé) are characterized by a low level of admixture due to geographical isolation. Conclusions – We showed how combining a literature review and genetic data from old herbarium specimens can shed light on previous observations made by botanists and guide further actions to better preserve native coffee plants in forest remnants of West Africa.

Mots-clés Agrovoc : Coffea canephora, Variation génétique, Génétique des populations, Distribution géographique, Herbier

Mots-clés géographiques Agrovoc : Guinée, Côte d'Ivoire

Mots-clés libres : Coffea canephora, Café Robusta, Côte d'Ivoire, Guinée, Herbarium, Genetic diversity, Population genetic structure, SSR markers, West African forest, Rubiaceae

Classification Agris : F30 - Plant genetics and breeding

Champ stratégique Cirad : CTS 1 (2019-) - Biodiversité

Auteurs et affiliations

  • Labouisse Jean-Pierre, CIRAD-BIOS-UMR PVBMT (REU) ORCID: 0000-0002-5592-6789
  • Cubry Philippe, IRD (FRA)
  • Austerlitz Frédéric, CNRS (FRA)
  • Rivallan Ronan, CIRAD-BIOS-UMR AGAP (FRA)
  • Nguyen Hong Anh, Université de Montpellier (FRA)

Source : Cirad-Agritrop (https://agritrop.cirad.fr/595413/)

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