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Host status of plants associated to coffee shady agroecosystems to Meloidogyne paranaensis. Lima-Rivera Dinorah, Anell-Mendoza Ma. Betsaida, Rivera-Fernández Andrés, Salinas-Castro Alejandro, Cerdan Carlos, Lopez-Lima Daniel, Villain Luc. 2024. Journal of Plant Diseases and Protection, 8 p.

Land-use patterns and fungal bioaerosols in the Brazilian Atlantic Forest biome. Mantoani Maurício C., Guerra Lara C. C., Andrade Maria F., Dias Maria A. F. S., Dias Pedro L.S., Rodrigues Fábio, Silva Dulcilena M. C. S., Duo Filho Valter Batista, Rudke Anderson Paulo, Martins Jorge A., Droprinchinski Martins Leila, Torezan José M. D., Brancalion Pedro H.S., Guillemot Joannès, Campoe Otavio, Phillips Vaughan, Carotenuto Federico, Santl-Temkiv Tina, Morris Cindy E., Gonçalves Fábio L. T.. 2024. Discover Environment, 2:19, 13 p.

Shade tree trait diversity and functions in agroforestry systems: A review of which traits matter. Isaac Marney E., Gagliardi Stephanie, Ordoñez J. C., Sauvadet Marie. 2024. Journal of Applied Ecology, 15 p.

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Salojärvi Jarkko, Rambani Aditi, Yu Zhe, Guyot Romain, Strickler Susan R., Lepelley Maud, Wang Cui, Rajaraman Sitaram, Rastas Pasi, Zheng Chunfang, Santos Muñoz Daniella, Meidanis João, Rossi Paschoal Alexandre, Bawin Yves, Krabbenhoft Trevor J., Wang Zhen Qin, Fleck Steven J., Aussel Rudy, Bellanger Laurence, Charpagne Aline, Fournier Coralie, Kassam Mohamed, Lefebvre Gregory, Métairon Sylviane, Descombes Patrick, Rigoreau Michel, Stolte Jens, Hamon Perla, Couturon Emmanuel, Tranchant-Dubreuil Christine, Mukherjee Minakshi, Lan Tianying, Engelhardt Jan, Stadler Peter, De Lemos Samara Mireza Correia, Ivamoto Suzuki Suzana, Sumirat Ucu, Wai Ching Man, Dauchot Nicolas, Orozco-Arias Simon, Garavito Giovanny, Kiwuka Catherine, Musoli Pascal, Nalukenge Anne, Guichoux Erwan, Reinout Havinga, Smit Martin, Carretero-Paulet Lorenzo, Guerreiro Filho Oliveiro, Toma Braghini Masako, Padilha Lilian, Hiroshi Sera Gustavo, Ruttink Tom, Henry Robert, Marraccini Pierre, et al.. 2024. Nature Genetics, 56 : 721-731.

Diterpenes of Coffea seeds show antifungal and anti-insect activities and are transferred from the endosperm to the seedling after germination. Antoine Gaëlle, Vaissayre Virginie, Meile Jean-Christophe, Payet Jim, Conejero Geneviève, Costet Laurent, Fock-Bastide Isabelle, Joët Thierry, Dussert Stéphane. 2023. Plant Physiology and Biochemistry, 194 : 627-637.

Genetic-environment interactions and climatic variables effect on bean physical characteristics and chemical composition of Coffea arabica. Sarzynski Thuan, Bertrand Benoît, Rigal Clément, Marraccini Pierre, Vaast Philippe, Georget Frederic, Campa Claudine, Abdallah Cécile, Nguyen Thi Quynh Chang, Nguyen Hung Phi, Nguyen Hai Thy Thanh, Ngoc Quyen Luu, Ngan Giang Khong, Viet Thang Vu, Navarini Luciano, Lonzarich Valentina, Bossolasco Laurent, Etienne Hervé. 2023. Journal of the Science of Food and Agriculture, 103 : 4692-4703.

Améliorer notre compréhension de la dynamique des populations des insectes ravageurs des cultures pour en faciliter la gestion agroécologique. Cas de la diversification des cultures pérennes tropicales. Babin Régis. 2022. Montpellier : Université de Montpellier, 140 p. Habilitation à diriger des recherches : Université de Montpellier

Improved forecasting of coffee leaf rust by qualitative modeling: Design and expert validation of the ExpeRoya model. Motisi Natacha, Bommel Pierre, Leclerc Grégoire, Robin Marie-Hélène, Aubertot Jean-Noël, Arias Butron Andrea, Merle Isabelle, Treminio Edwin, Avelino Jacques. 2022. Agricultural Systems, 197:103352, 26 p.

Occurrence and density of the stink bug Antestiopsis thunbergii Gmelin 1790 (Heteroptera: Pentatomidae) and related egg-parasitoids in Burundi coffee agroecosystems. Mugishawimana Jean, Murungi Lucy Kananu, Ndihokubwayo Soter, Nibasumba Anaclet, Haran Julien, David Guillaume, Haran Julien, David Guillaume. 2022. International Journal of Tropical Insect Science, 42 (5) : 3465-3480.

Potential of the coffee endophytic Bacillus cereus sensu lato strain CCBLR15 to control the plant-parasitic nematode Radopholus duriophilus. Duong Benoit, Marraccini Pierre, Etienne Hervé, Villain Luc, Hoang Thi Giang, Khong Ngan Giang, Lebrun Michel, Duponnois Robin. 2022. Biocontrol Science and Technology, 32 (8) : 971-988.

Sequencing-based molecular markers for wild and cultivated coffee diversity exploration and crop improvement. Vi Tram, Marraccini Pierre, De Kochko Alexandre, Cubry Philippe, Khong Ngan Giang, Poncet Valérie. 2022. In : Coffee science: biotechnological advances, economics, and health benefits. Ramakrishna Akula (ed.), Giridhar Parvatam (ed.), Jeszka-Skowron Magdalena (ed.) (eds.). Boca Raton : CRC Press, 213-220. ISBN 978-0-367-48843-7

Shade effects on yield across different Coffea arabica cultivars — how much is too much? A meta-analysis. Koutouleas Athina, Sarzynski Thuan, Bertrand Benoît, Bordeaux Mélanie, Skovmand Bosselmann Aske, Campa Claudine, Etienne Hervé, Turreira-Garcia Nerea, Leran Sophie, Markussen Bo, Marraccini Pierre, Cochicho Ramalho José, Vaast Philippe, Raebild Anders. 2022. Agronomy for Sustainable Development, 42:55, 13 p.

Shaded-coffee: A nature-based strategy for coffee production under climate change? A review. Koutouleas Athina, Sarzynski Thuan, Bordeaux Mélanie, Skovmand Bosselmann Aske, Campa Claudine, Etienne Hervé, Turreira-Garcia Nerea, Rigal Clément, Vaast Philippe, Cochicho Ramalho José, Marraccini Pierre, Raebild Anders. 2022. Frontiers in Sustainable Food Systems, 6:877476, 21 p.

The dark side of shade: How microclimates drive the epidemiological mechanisms of coffee berry disease. Motisi Natacha, Papaïx Julien, Poggi Sylvain. 2022. Phytopathology, 112 (6) : 1235-1243.

Breeding for the main agricultural farming of Arabica coffee. Bertrand Benoît, Villegas Hincapie Andres Mauricio, Marie Lison, Breitler Jean-Christophe. 2021. Frontiers in Sustainable Food Systems, 5:709901, 15 p.

Training of trainers on Antestiopsis orbitalis management in coffee plantations. David Guillaume, Cilas Christian. 2021. Montpellier : CIRAD, 8 p.

Transformation of coffee-growing landscapes across Latin America. A review. Harvey Celia A., Pritts Alyssa A., Zwetsloot Marie J., Jansen Kees, Pulleman Mirjam, Armbrecht Inge, Avelino Jacques, Barrera Juan Francisco, Bunn Christian, Hoyos García Javier, Isaza Carlos, Munoz-Ucros Juana, Pérez-Alemán Carlos J., Rahn Eric, Robiglio Valentina, Somarriba Eduardo, Valencia Vivian. 2021. Agronomy for Sustainable Development, 41:62, 19 p.

Analysis of interactions amongst shade trees, coffee foliar diseases and coffee yield in multistrata agroforestry systems. Durand-Bessart Clémentine, Tixier Philippe, Quinteros Alcide, Andreotti Federico, Rapidel Bruno, Tauvel Camille, Allinne Clémentine. 2020. Crop Protection, 133:105137, 8 p.

Assessing the accuracy and robustness of a process-based model for coffee agroforestry systems in Central America. Ovalle-Rivera Oriana, Van Oijen Marcel, Läderach Peter, Roupsard Olivier, de Melo Virginio Filho Elias, Barrios Aguirrez Mirna, Rapidel Bruno. 2020. Agroforestry Systems, 94 : 2033-2051.

Authentication of Coffea arabica varieties through DNA fingerprinting and its significance for the coffee sector. Pruvot-Woehl Solène, Krishnan Sarada, Solano William, Schilling Timothy, Toniutti Lucile, Bertrand Benoît, Montagnon Christophe. 2020. Journal of AOAC International, 103 (2) : 325-334.

Contribution of shade trees to wind dynamics and pathogen dispersal on the edge of coffee agroforestry systems: A functional traits approach. Gagliardi Stephanie, Avelino Jacques, Bagny-Beilhe Leïla, Isaac Marney E.. 2020. Crop Protection, 130:105071, 8 p.

Discovering weather periods and crop properties favorable for coffee rust incidence from feature selection approaches. Lasso Emmamnuel, Corrales David Camilo, Avelino Jacques, de Melo Virginio Filho Elias, Corrales Juan Carlos. 2020. Computers and Electronics in Agriculture, 176:105640, 11 p.

Economic constraints as drivers of coffee rust epidemics in Nicaragua. Villarreyna Acuna Rogelio Antonio, Barrios Mirna, Vilchez Mendoza Sergio José, Cerda Rolando, Vignola Raffaele, Avelino Jacques. 2020. Crop Protection, 127:104980, 12 p.

Effect of cropping system, shade cover and altitudinal gradient on coffee yield components at Mt. Elgon, Uganda. Sarmiento-Soler Alejandra, Vaast Philippe, Hoffmann Munir P., Jassogne Laurence, Van Asten Piet J.A., Graefe Sophie, Rötter Reimund P.. 2020. Agriculture, Ecosystems and Environment, 295:106887, 12 p.

Forecast models of coffee leaf rust symptoms and signs based on identified microclimatic combinations in coffee-based agroforestry systems in Costa Rica. Merle Isabelle, Tixier Philippe, de Melo Virginio Filho Elias, Cilas Christian, Avelino Jacques. 2020. Crop Protection, 130, 105046, 15 p.

Full moonlight-induced circadian clock entrainment in Coffea arabica. Breitler Jean-Christophe, Djerrab Doaa, Leran Sophie, Toniutti Lucile, Guittin Charlie, Severac Dany, Pratlong Marine, Dereeper Alexis, Etienne Hervé, Bertrand Benoît. 2020. BMC Plant Biology, 20:24, 11 p.

Hojarasca e inóculo de Mycena citricolor sobre la epidemia de ojo de gallo. Granados-Montero Milagro, Avelino Jacques, Arauz-Cavallini Felipe, Castro-Tanzi Sebastian, Ureña Natalia. 2020. Agronomía Mesoamericana, 31 (1) : 77-94.

Landscape fragmentation in coffee agroecological subzones in central Kenya: A multiscale remote sensing approach. Mosomtai Gladys, Odindi John, Abdel-Rahman Elfatih M., Babin Régis, Pinard Fabrice, Mutanga Onisimo, Tonnang Henri E.Z., David Guillaume, Landmann Tobias. 2020. Journal of Applied Remote Sensing, 14 (4):044513, 20 p.

Limited genotypic and geographic variability of 16-O-methylated diterpene content in Coffea arabica green beans. Portaluri Vincent, Thomas Freddy, Guyader Sophie, Jamin Eric, Bertrand Benoît, Remaud Gérald S., Schievano Elisabetta, Mammi Stefano, Guercia Elena, Navarini Luciano. 2020. Food Chemistry, 329:127129, 7 p.

Modelling the effect of temperature on the biology and demographic parameters of the African coffee white stem borer, Monochamus leuconotus (Pascoe) (Coleoptera: Cerambycidae). Azrag Abdelmutalab G.A., Yusuf Abdullahi A., Pirk Christian W.W., Niassy Saliou, Guandaru Ephantus K., David Guillaume, Babin Régis. 2020. Journal of Thermal Biology, 89:102534, 11 p.

Prehaustorial local resistance to coffee leaf rust in a Mexican cultivar involves expression of salicylic acid-responsive genes. Couttolenc-Brenis Edgar, Carrion Gloria, Villain Luc, Ortega-Escalona Fernando, Ramírez-Martínez Daniel, Mata-Rosas Martín, Méndez-Bravo Alfonso. 2020. PeerJ, 8:e8345, 21 p.

Shade tree Chloroleucon eurycyclum promotes coffee leaf rust by reducing uredospore wash-off by rain. Avelino Jacques, Vilchez Mendoza Sergio José, Segura Escobar Marta Beatriz, Brenes Loaiza Marvin Alejandro, Virginio Filho Elias de Melo, Casanoves Fernando. 2020. Crop Protection, 129:105038, 8 p.

Temperature-dependent development and survival of immature stages of the coffee berry borer Hypothenemus hampei (Coleoptera: Curculionidae). Azrag Abdelmutalab G.A., Yusuf Abdullahi A., Pirk Christian W.W., Niassy Saliou, Mbugua K.K., Babin Régis. 2020. Bulletin of Entomological Research, 110 (2) : 207-218.

A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm. Scalabrin Simone, Toniutti Lucile, Di Gaspero Gabriele, Scaglione Davide, Magris Gabriele, Vidotto Michele, Pinosio Sara, Cattonaro Frederica, Magni Federica, Jurman Irena, Cerutti Mario, Suggi Liverani Furio, Navarini Luciano, Del Terra Lorenzo, Pellegrino Gloria, Ruosi Manuela Rosanna, Vitulo Nicola, Valle Giorgio, Pallavicini Alberto, Graziosi Giorgio, Klein Patricia E., Bentley Nolan, Murray Seth C., Solano William, Al Hakimi Amin, Schilling Timothy, Montagnon Christophe, Morgante Michele, Bertrand Benoît. 2020. Scientific Reports, 10:4642, 13 p.

Expression of DREB-like genes in Coffea canephora and C. arabica subjected to various types of abiotic stress. Ferreira Torres Luana, Reichel Tharyn, Dechamp Eveline, De Aquino Oliveira Sinara, Duarte Karoline Estefani, Costa Alves Gabriel Sergio, Tadeu Silva Anderson, Guitton Cotta Michelle, Santos Costa Tatiana, Cardamone Diniz Leandro Eugenio, Breitler Jean-Christophe, Collin Myriam, Vilela Paiva Luciano, Carvalho Andrade Alan, Etienne Hervé, Marraccini Pierre. 2019. Tropical Plant Biology, 12 (2) : 98-116.

Population structure and genetic relationships between Ethiopian and Brazilian Coffea arabica genotypes revealed by SSR markers. Rodrigues da Silva Bruna Silvestre, Sant'ana Gustavo Cesar, Chaves Camila Lucas, Godoy Androcioli Leonardo, Vecchia Ferreira Rafaelle, Hiroshi Sera Gustavo, Charmetant Pierre, Leroy Thierry, Pot David, Silva Domingues Douglas, Protasio Pereira Luiz Filipe. 2019. Genetica, 147 (2) : 205-216.

Water use of Coffea arabica in open versus shaded systems under smallholder's farm conditions in Eastern Uganda. Sarmiento-Soler Alejandra, Vaast Philippe, Hoffmann Munir P., Rötter Reimund P., Jassogne Laurence, Van Asten Piet J.A., Graefe Sophie. 2019. Agricultural and Forest Meteorology, 266-267 : 231-242.

From the field to coffee cup: Impact of planting design on chlorogenic acid isomers and other compounds in coffee beans and sensory attributes of coffee beverage. Dos Santos Scholz Maria Brigida, Good Kitzberger Cíntia Sorane, Durand Noel, Rakocevic Miroslava. 2018. European Food Research and Technology, 244 (10) : 1793-1802.

Integrated coffee berry borer management in the Toba Highlands. Doloksaribu Yuliana, Wagianto Wagianto, Kerana I Wayan, Dufour Bernard Pierre. 2018. Paris : CIRAD, 7 p.

Integrative analysis of the late maturation programme and desiccation tolerance mechanisms in intermediate coffee seeds. Dussert Stéphane, Serret Julien, Bastos-Siqueira Aldecinei, Morcillo Fabienne, Dechamp Eveline, Rofidal Valérie, Lashermes Philippe, Etienne Hervé, Joët Thierry. 2018. Journal of Experimental Botany, 69 (7) : 1583-1597.

Ripe coffee berry volatiles repel second instar nymphs of Antestia bugs (Heteroptera: Pentatomidae: Antestiopsis thunbergii). Njihia Teresiah, Torto Baldwin, Murungi Lucy Kananu, Irungu Janet, Mwenda Dickson, Babin Régis. 2018. Chemoecology, 28 (3) : 91-100.

Identification of kairomones of second instar nymphs of the variegated coffee bug Antestiopsis thunbergii (Heteroptera: Pentatomidae). Njihia Teresiah, Torto Baldwin, Murungi Lucy Kananu, Irungu Janet, Mwenda Dickson, Babin Régis. 2017. Chemoecology, 27 (6) : 239-248.

Increased light-use efficiency sustains net primary productivity of shaded coffee plants in agroforestry system. Charbonnier Fabien, Roupsard Olivier, Le Maire Guerric, Guillemot Joannès, Casanoves Fernando, Lacointe André, Vaast Philippe, Allinne Clémentine, Audebert Louise, Cambou Aurélie, Clément-Vidal Anne, Defrenet Elsa, Duursma Remko A., Jarri Laura, Jourdan Christophe, Khac Emmanuelle, Leandro Patricia, Medlyn Belinda E., Saint André Laurent, Thaler Philippe, Van den Meersche Karel, Barquero Aguilar Alejandra, Lehner Peter, Dreyer Erwin. 2017. Plant, Cell and Environment, 40 (8) : 1592-1608.

Influence of environmental conditions and genetic background of Arabica coffee (C. arabica L) on leaf rust (Hemileia vastatrix)pathogenesis. Toniutti Lucile, Breitler Jean-Christophe, Etienne Hervé, Campa Claudine, Doulbeau Sylvie, Urban Laurent, Lambot Charles, Pinilla Juan-Carlos H., Bertrand Benoît. 2017. Frontiers in Plant Science, 8:2025, 12 p.

Use of genetic resources of Coffea arabica. Adaptation of F1 hybrids to various environmental conditions. Charmetant Pierre, Pereira Luiz Filipe P., Sera Gustavo, Marraccini Pierre, Andrade Alan A., Mouen J., Akoumou T.M.M., Annebique Fabien, Leroy Thierry. 2017. In : Crop diversification in a changing world: Mobilizing the green gold of plant genetic resources. Montpellier : EUCARPIA, 1 poster EUCARPIA Genetic Resources, Montpellier, France, 8 Mai 2017/11 Mai 2017.

Adaptation of Coffea arabica F1 hybrids to various environmental conditions. Charmetant Pierre, Thimpson M.M., Silva Bruna S.R., Marraccini Pierre, Veiga A., Mouen J., Andrade Alan A., Pereira Luiz Filipe P., Leroy Thierry. 2016. . Kunming : ASIC, 1 poster International Conference on Coffee Science. 26, Kunming, Chine, 13 Novembre 2016/19 Novembre 2016.

Discrimination of post-harvest coffee processing methods by microbial ecology analyses. Hamdouche Yasmine, Meile Jean-Christophe, Nganou Donkeng Nadège, Durand Noel, Teyssier Corinne, Montet Didier. 2016. Food Control, 65 : 112-120.

Entomology expertise in Olam Milano Farm, Barreiras, Brazil. 21 August to 27 august 2016. Babin Régis. 2016. Montpellier : CIRAD, 23 p. N° de rapport : N° A-106 2016-06

Shade effects on the dispersal of airborne Hemileia vastatrix uredospores. Boudrot Audrey, Pico Jimmy, Merle Isabelle, Granados Eduardo, Vilchez Sergio, Tixier Philippe, Virginio Filho Elias de Melo, Casanoves Fernando, Tapia Ana, Allinne Clémentine, Rice Robert A., Avelino Jacques. 2016. Phytopathology, 106 : 572-580.

The greater phenotypic homeostasis of the allopolyploid Coffea arabica improved the transcriptional homeostasis over that of both diploid parents. Bertrand Benoît, Bardil Amélie, Baraille Hélène, Dussert Stéphane, Doulbeau Sylvie, Dubois Emeric, Severac Dany, Dereeper Alexis, Etienne Hervé. 2015. Plant and Cell Physiology, 56 (10) : 2035-2051.

Gestion durable des systèmes agroforestiers à base de caféiers sous pression de bioagresseurs. Ngo-Dinh Charlotte. 2013. Montpellier : Montpellier SupAgro, 47 p. Mémoire de fin d'études : Ingénieur agronome. Production végétale durable : Montpellier SupAgro

Collections du CCRA Sérédou (IRAG, Guinée). Situation en juillet 1993. C. canephora, C. arabica, C. × arabusta, autres Coffea et arbustes d'ombrage. Labouisse Jean-Pierre. 1993. Sérédou : CIRAD-IRCC, 28 p.

Institut de Recherche Agronomique de Guinée. Filière Plantes Stimulantes. Rapport d'activités du 1er semestre 1993 et passation de service. Labouisse Jean-Pierre. 1993. Sérédou : CIRAD-IRCC, 26 p.