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Celebrating the 20th anniversary of the first Xanthomonas genome sequences - how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures - a perspective from the French network on Xanthomonads. Koebnik Ralf, Cesbron Sophie, Chen Nicolas W.G., Fischer-Le Saux Marion, Hutin Mathilde, Jacques Marie Agnès, Noel Laurent D., Pérez-Quintero Alvaro L., Portier Perrine, Pruvost Olivier, Rieux Adrien, Szurek Boris. 2024. Peer Community Journal, 4:e19, 22 p.

Frankia-actinorhizal symbiosis: A non-chemical biological assemblage for enhanced plant growth, nodulation and reclamation of degraded soils. Bhattacharyya Pranaba Nanda, Islam Nazim Forid, Sarma Bhaskar, Nath Bharat Chandra, Tawfeeq Al-Ani Laith Khalil, Lesueur Didier. 2024. Symbiosis, 92 : 1-26.

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Salojärvi Jarkko, Rambani Aditi, Yu Zhe, Guyot Romain, Strickler Susan R., Lepelley Maud, Wang Cui, Rajaraman Sitaram, Rastas Pasi, Zheng Chunfang, Santos Muñoz Daniella, Meidanis João, Rossi Paschoal Alexandre, Bawin Yves, Krabbenhoft Trevor J., Wang Zhen Qin, Fleck Steven J., Aussel Rudy, Bellanger Laurence, Charpagne Aline, Fournier Coralie, Kassam Mohamed, Lefebvre Gregory, Métairon Sylviane, Descombes Patrick, Rigoreau Michel, Stolte Jens, Hamon Perla, Couturon Emmanuel, Tranchant-Dubreuil Christine, Mukherjee Minakshi, Lan Tianying, Engelhardt Jan, Stadler Peter, De Lemos Samara Mireza Correia, Ivamoto Suzuki Suzana, Sumirat Ucu, Wai Ching Man, Dauchot Nicolas, Orozco-Arias Simon, Garavito Giovanny, Kiwuka Catherine, Musoli Pascal, Nalukenge Anne, Guichoux Erwan, Reinout Havinga, Smit Martin, Carretero-Paulet Lorenzo, Guerreiro Filho Oliveiro, Toma Braghini Masako, Padilha Lilian, Hiroshi Sera Gustavo, Ruttink Tom, Henry Robert, Marraccini Pierre, et al.. 2024. Nature Genetics, 56 : 721-731.

Citrus origines. Curk Franck, Luro François, Hussain Sajjad, Ollitrault Patrick. 2023. In : Citrus production: Technological advancements and adaptation to changing climate. Hussain Sajjad (ed.), Khalid Muhammad Fasih (ed.), Ali Muhammad Arif (ed.), Ahmed Niaz (ed.), Hasanuzzaman Mirza (ed.), Ahmad Shakeel (ed.). Boca Raton : CRC Press, 1-21. ISBN 978-0-367-63474-2

Detecting directional and non-directional epistasis in bi-parental populations using genomic data. Rio Simon, Charcosset Alain, Moreau Laurence, Mary-Huard Tristan. 2023. Genetics, 224 (3):iyad089, 10 p.

Genomic analysis of two phlebotomine sand fly vectors of Leishmania from the New and Old World. Labbe Frédéric, Abdeladhim Maha, Abrudan Jenica, Araki Alejandra Saori, Araujo Ricardo N., Arensburger Peter, Benoit Joshua B., Brazil Reginaldo Pecanha, Bruno Rafaela V., Bueno da Silva Rivas Gustavo, Carvalho de Abreu Vinicius, Charamis Jason, Coutinho-Abreu Iliano V., da Costa-Latgé Samara G., Darby Alistair, Dillon Viv M., Emrich Scott J., Fernandez-Medina Daniela, Figueiredo Gontijo Nelder, Flanley Catherine M., Gatherer Derek, Genta Fernando A., Gesing Sandra, Giraldo-Calderón Gloria I., Gomes Bruno, Aguiar Eric Roberto Guimaraes Rocha, Hamilton James G. C., Hamarsheh Omar, Hawksworth Mallory, et al.. 2023. PLoS Neglected Tropical Diseases, 17 (4):e0010862, 35 p.

When morphology does not fit the genomes: the case of rodent olfaction. Martinez Quentin, Courcelle Maxime, Douzery Emmanuel, Fabre Pierre-Henri. 2023. Biology Letters, 19 (4):20230080, 7 p.

Whole-genome sequences of Bipolaris bicolor, Curvularia hawaiiensis, Curvularia spicifera, and Exserohilum rostratum isolated from rice in Burkina Faso, France, Mali, and Pakistan. Kaboré Kouka Hilaire, Kassankogno Abalo Itolou, Adreit Henri, Ravel Sébastien, Charriat Florian, Diagne Diariatou, Lebrun Marc-Henri, Tharreau Didier. 2023. Mycology, 12 (11), 4 p.

A natural single nucleotide mutation in the small regulatory RNA ArcZ of Dickeya solani switches off the antimicrobial activities against yeast and bacteria. Brual Typhaine, Effantin Geraldine, Baltenneck Julie, Attaiech Laetitia, Grosbois Cloé, Royer Monique, Cigna Jérémy, Faure Denis, Hugouvieux-Cotte-Pattat Nicole, Gueguen Erwan. 2023. PLoS Genetics, 19 (4):e1010725, 23 p.

Mapping for males: Sustainable sex control in nile tilapia. D'Cotta Helena, Triay Cécile, Sissao Rokyatou, Bezault Etienne, Conte Matthieu, Courcelle Maxime, Caminade Pierre, Toguyeni Aboubacar, Kocher Thomas D., Baroiller Jean-François. 2022. Aquaculture Journal, 2 (2), p. 95 Genomics in Aquaculture (GIA). 6, Grenade, Espagne, 4 Mai 2022/6 Mai 2022.

Towards smart and sustainable development of modern berry cultivars in Europe. Senger Elisa, Osorio Sonia, Olbricht Klaus, Shaw Paul, Denoyes Béatrice, Davik Jahn, Predieri Stefano, Karhu Saila, Raubach Sebastian, Lippi Nico, Höfer Monika, Cockerton Helen, Pradal Christophe, Kafkas Ebru, Litthauer Suzanne, Usadel Björn, Mezzetti Bruno. 2022. Plant Journal, 11 (5) : 1238-1251.

Transgenic expression of Nix converts genetic females into males and allows automated sex sorting in Aedes albopictus. Lutrat Célia, Olmo Roenick P., Baldet Thierry, Bouyer Jérémy, Marois Eric. 2022. Communications Biology, 5:210, 10 p.

Yam genomics. Chaïr Hâna, Arnau Gemma, Zotta Mota Ana. 2022. In : Underutilised crop genomes. Chapman Mark A. (ed.). Cham : Springer, 373-389. (Compendium of Plant Genomes) ISBN 978-3-031-00847-4

A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae. Wang Ziwei, Rouard Mathieu, Biswas Manosh Kumar, Droc Gaëtan, Cui Dongli, Roux Nicolas, Baurens Franc-Christophe, Ge Xue-Jun, Schwarzacher Trude, Heslop-Harrison Pat, Liu Qing. 2022. GigaScience, 11:giac027, 21 p.

A curated dataset of peste des petits ruminants virus sequences for molecular epidemiological analyses. Baron Michael D., Bataille Arnaud. 2022. PloS One, 17 (2):e0263616, 22 p.

The genetic history of Mayotte and Madagascar cattle breeds mirrors the complex pattern of human exchanges in Western Indian Ocean. Magnier Jessica, Druet Tom, Naves Michel, Ouvrard Mélissa, Raoul Solène, Janelle Jérôme, Moazami-Goudarzi Katayoun, Lesnoff Matthieu, Tillard Emmanuel, Gautier Mathieu, Flori Laurence. 2022. G3 - Genes Genomes Genetics, 12 (4):jkac029, 14 p.

Free-living, psychrotrophic bacteria of the Genus Psychrobacter are descendants of pathobionts. Welter Daphne K., Ruaud Albane, Henseler Zachariah M., De Jong Hannah N., Van Coeverden de Groot Peter, Michaux Johan, Gormezano Linda, Waters Jillian L., Youngblut Nicholas D., Ley Ruth E.. 2021. mSystems, 6 (2), 20 p.

On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo. Rabier Charles-Elie, Berry Vinvent, Stoltz Marnus, Santos João D., Wang Wensheng, Glaszmann Jean-Christophe, Pardi Fabio, Scornavacca Céline. 2021. PLoS Computational Biology, 17 (9):e1008380, 39 p.

SNP-based genotyping and whole-genome sequencing reveal previously unknown genetic diversity in Xanthomonas vasicola pv. musacearum, causal agent of banana xanthomonas wilt, in its presumed Ethiopian origin. Nakato Gloria Valentine, Studholme David J., Blomme Guy, Grant Murray, Coutinho Teresa A., Were Evans M., Wicker Emmanuel, Mahuku George. 2021. Plant Pathology, 70 (3) : 534-543.

Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing. Belser Caroline, Baurens Franc-Christophe, Noël Benjamin, Martin Guillaume, Cruaud Corinne, Istace Benjamin, Yahiaoui Nabila, Labadie Karine, Hribova Eva, Dolezel Jaroslav, Lemainque Arnaud, Wincker Patrick, D'Hont Angélique, Aury Jean-Marc. 2021. Communications Biology, 4:1047, 12 p.

Citrus taxonomy. Ollitrault Patrick, Curk Franck, Krueger Robert. 2020. In : The genus Citrus. Talon Manuel (ed.), Caruso Marco (ed.), Gmitter Fred (ed.). Amsterdam : Elsevier, 57-81. ISBN 978-0-12-812163-4

Contrasting genetic diversity and structure among Malagasy Ralstonia pseudosolanacearum phylotype I populations inferred from an optimized Multilocus Variable Number of Tandem Repeat Analysis scheme. Rasoamanana Hasina, Ravelomanantsoa Santatra, Yahiaoui Noura, Dianzinga Niry Tiana, Rebert Emeline, Gauche Miharisoa-Mirana, Pecrix Yann, Costet Laurent, Rieux Adrien, Prior Philippe, Robene Isabelle, Cellier Gilles, Guérin Fabien, Poussier Stéphane. 2020. PloS One, 15 (12):e0242846, 22 p.

Genome resource of two potato strains of Ralstonia solanacearum biovar 2 (Phylotype IIB Sequevar 1) and biovar 2T (Phylotype IIB Sequevar 25) isolated from lowlands in Iran. Sedighian Nasim, Krijger Marjon, Taparia Tanvi, Taghavi S. Mohsen, Wicker Emmanuel, van der Wolf Jan M., Osdaghi Ebrahim. 2020. Molecular Plant-Microbe Interactions, 33 (7) : 872-875.

Pearl millet genomic vulnerability to climate change in West Africa highlights the need for regional collaboration. Rhone Bénédicte, Defrance Dimitri, Berthouly-Salazar Cécile, Mariac Cédric, Cubry Philippe, Couderc Marie, Dequincey Anaïs, Assoumane Aichatou, Kane Ndjido Ardo, Sultan Benjamin, Barnaud Adeline, Vigouroux Yves. 2020. Nature Communications, 11:5274, 9 p.

Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps. Belser Caroline, Istace Benjamin, Denis Erwan, Dubarry Marion, Baurens Franc-Christophe, Falentin Cyril, Genete Mathieu, Berrabah Wahiba, Chèvre Anne-Marie, Delourme Régine, Deniot Gwenaëlle, Denoeud France, Duffé Philippe, Engelen Stefan, Lemainque Arnaud, Manzanares-Dauleux Maria J., Martin Guillaume, Morice Jérôme, Noël Benjamin, Vekemans Xavier, D'Hont Angélique, Rousseau-Gueutin Mathieu, Barbe Valérie, Cruaud Corinne, Wincker Patrick, Aury Jean-Marc. 2018. Nature Plants, 4 (11) : 879-887.

Genome-wide analysis of Corynespora cassiicola leaf fall disease putative effectors. Lopez David, Ribeiro Sébastien, Label Philippe, Fumanal Boris, Venisse Jean-Stéphane, Kohler Annegret, de Oliveira Ricardo R., Labutti Kurt, Lipzen Anna, Lail Kathleen, Bauer Diane, Ohm Robin, Barry Kerrie W., Spatafora Joseph W., Grigoriev Igor, Martin Francis, Pujade-Renaud Valérie. 2018. Frontiers in Microbiology, 9:276, 21 p.

Tick-bacteria mutualism depends on B vitamin synthesis pathways. Duron Olivier, Morel Olivier, Noel Valérie, Buysse Marie, Binetruy Florian, Lancelot Renaud, Loire Etienne, Ménard Claudine, Bouchez Olivier, Vavre Fabrice, Vial Laurence. 2018. Current Biology, 28 (12):e5 : 1896-1902.e5.

The genomic basis of color pattern polymorphism in the harlequin ladybird. Gautier Mathieu, Yamaguchi Junichi, Foucaud Julien, Loiseau Anne, Ausset Aurélien, Facon Benoît, Gschloessl Bernhard, Lagnel Jacques, Loire Etienne, Parrinello Hugues, Severac Dany, Lopez-Roques Céline, Donnadieu Cécile, Manno Maxime, Berges Hélène, Gharbi Karim, Lawson-Handley Lori, Zang Lian-Sheng, Vogel Heiko, Estoup Arnaud, Prud'homme Benjamin. 2018. Current Biology, 28 (20):e7 : 3296-3302.

Genome sequencing of the sweetpotato whitefly Bemisia tabaci MED/Q. Xie Wen, Chen Chunhai, Yang Zezhong, Guo Litao, Yang Xin, Wang Dan, Chen Ming, Huang Jinqun, Wen Yanan, Zeng Yang, Liu Yating, Xia Jixing, Tian Lixia, Cui Hongying, Wu Qingjun, Wang Shaoli, Wu Baoyun, Li Xianchiun, Tan Xinqiu, Ghanim Murad, Qiu Baoli, Pan Huipeng, Chu Dong, Delatte Hélène, Maruthi M.N., Ge Feng, Zhou Xueping, Wang Xiaowei, Wan Fang-Hao, Du Yuzhou, Luo Chen, Yan Fengming, Preisser Evan L., Jiao Xiaoguo, Coates Brad S., Zhao Jinyang, Gao Qiang, Xia Jinquan, Yin Ye, Liu Yong, Brown Judith, Zhou Xuguo-Joe, Zhang Youjun. 2017. GigaScience, 6 (5), 7 p.

The rubber tree genome reveals new insights into rubber production and species adaptation. Tang Chaorong, Yang Meng, Fang Yongjun, Luo Yingfeng, Gao Shenghan, Xiao Xiaohu, An Zewei, Zhou Binhui, Zhang Bing, Tan Xinyu, Yeang Hoong Yeet, Qin Yunxia, Yang Jianghua, Lin Qiang, Mei Hailiang, Montoro Pascal, Long Xiangyu, Qi Jiyan, Hua Yuwei, He Zilong, Sun Min, Li Wenjie, Zeng Xia, Cheng Han, Liu Ying, Yang Jin, Tian Weimin, Zhuang Nansheng, Zeng Rizhong, Li Dejun, He Peng, Li Zhe, Zou Zhi, Li Shuangli, Li Chenji, Wang Jixiang, Wei Dong, Lai Chao-Qiang, Luo Wei, Yu Jun, Hu Songnian, Huang Huasun. 2016. Nature Plants, 10 p.

What the genomics of arbuscular mycorrhizal symbiosis teaches us about root development. Formey Damien, Jourda Cyril, Roux Christophe, Delaux Pierre-Marc. 2013. In : Root Genomics and Soil Interactions. Crespi Martin (ed.). Oxford : Wiley-Blackwell, 171-188. ISBN 978-0-4709-6043-1