Molecular characterization of Euphorbia caput-medusae stunt virus: Evidence for the existence of a new genus within the family Geminiviridae

Bernardo Pauline, Fernandez Emmanuel, Granier Martine, Golden Michael, Rebelo Tony A., Peterschmitt Michel, Martin Darren Patrick, Roumagnac Philippe. 2013. Molecular characterization of Euphorbia caput-medusae stunt virus: Evidence for the existence of a new genus within the family Geminiviridae. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, p. 9. Rencontres de Virologie Végétale. 14, Aussois, France, 13 January 2013/17 January 2013.

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Abstract : Studies focusing on phytoviruses isolated from the wild are rare. Nevertheless, even if those studies remain scarce, it is increasingly accepted that viruses coming from wild plants might play a role on disease emergence and in the functioning of ecosystems. Geminivirus are a major cause of disease on plants of agronomic interest. We hypothesize that strengthening our knowledge of the geminivirus diversity coming from the wild could help reconstructing the evolutionary history of the Geminiviridae family but also could help us understanding and predicting future epidemics. Over the past two decades, rolling circle amplification (RCA) has been more and more employed for the detection of small circular single-stranded DNA viruses, including geminivirus coming from the wild 1. We have used this method for detecting the presence of ssDNA from 236 plants collected in the South African fynbos. We have obtained amplified DNAs from 36% of the plants (85 out of 236 plants). Using classical cloning and sequencing methods, we have obtained ten sequences of which one was identified as a plant virus. This viral sequence corresponds to a new geminivirus, which infects a wild spurge (Euphorbia caput-medusae). This geminivirus is highly divergent from the current known members of the family Geminiviridae and is likely to represent a new previously unknown genus of this agriculturally highly relevant family of viruses. The virus, which we have named Euphorbia caput-medusae stunt virus (EcmSV) is not obviously a recombinant of viruses in the known geminivirus genera, has features most similar to viruses in the genus Mastrevirus (the presence of a repA gene and the production transcripts that are almost certainly spliced), but it also has unique features among geminiviruses (potential product of spliced V2-V3 ORFs). Besides EcmSV providing new information on the evolutionary history of geminiviruses, its discovery stresses the need to better assess viral diversity at the interface between wild and cultivated areas (by in situ sampling) and to study viruses isolated from wild hosts for their potential to infect crop species and vice-versa (by in vitro experimentation). 1. Varsani,A. et al. A highly divergent South African geminivirus species (Texte intégral)

Classification Agris : H20 - Plant diseases

Auteurs et affiliations

  • Bernardo Pauline, CIRAD-BIOS-UMR BGPI (FRA)
  • Fernandez Emmanuel, CIRAD-BIOS-UMR BGPI (FRA)
  • Granier Martine, CIRAD-BIOS-UMR BGPI (FRA)
  • Golden Michael, Institute of Infectious Diseases and Molecular Medicine (ZAF)
  • Rebelo Tony A., SANBI (ZAF)
  • Peterschmitt Michel, CIRAD-BIOS-UMR BGPI (FRA)
  • Martin Darren Patrick, Institute of Infectious Diseases and Molecular Medicine (ZAF)
  • Roumagnac Philippe, CIRAD-BIOS-UMR BGPI (FRA) ORCID: 0000-0001-5002-6039

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