Banana genome hub

Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2013. Banana genome hub. In : 6th International Biocuration Conference, Cambridge, Royaume-Uni, april 07-10 2013. s.l. : s.n., 1 p. International Biocuration Conference. 6, Cambridge, Royaume-Uni, 7 Avril 2013/10 Avril 2013.

Résumé : Banana is not only one of the world's favorite fruits but also one of the most important crops for developing countries. The banana reference genome sequence (Musa acuminata) was released recently. Given its taxonomical position, the sequence has particular comparative value highlighted in the recent genome publication providing new insights regarding the evolution of monocotyledons. This study has been enhanced by a number of tools and resources described in this publication. Here, we present all the tools that are available to harness the reference genome sequence and to support post?genomic efforts, such as transcriptomic and metabolomic pathways studies. Several uses cases illustrate how the banana genome hub can be used to study gene families. Overall, with this collaborative effort we discuss the importance of the interoperability towards data integration between existing information systems.

Classification Agris : F30 - Génétique et amélioration des plantes
F70 - Taxonomie végétale et phytogéographie
C30 - Documentation et information

Auteurs et affiliations

• Droc Gaëtan, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0003-1849-1269
• Larivière Delphine, Montpellier SupAgro (FRA)
• Guignon Valentin, Bioversity International (FRA)
• Yahiaoui Nabila, CIRAD-BIOS-UMR AGAP (FRA)
• This Dominique, Montpellier SupAgro (FRA)
• Garsmeur Olivier, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-8869-3689
• Dereeper Alexis, IRD (FRA)
• Hamelin Chantal, CIRAD-BIOS-UMR AGAP (FRA)
• Argout Xavier, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0002-0100-5511
• Dufayard Jean-François, CIRAD-BIOS-UMR AGAP (FRA)
• Lengellé Juliette
• Baurens Franc-Christophe, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0002-5219-8771
• Cenci Alberto, IRD (FRA)
• Pitollat Bertrand, CIRAD-BIOS-UMR AGAP (FRA)
• D'Hont Angélique, CIRAD-BIOS-UMR AGAP (FRA)
• Ruiz Manuel, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-8153-276X
• Rouard Mathieu, Bioversity International (FRA)
• Bocs Stéphanie, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-7850-4426

Source : Cirad - Agritrop (https://agritrop.cirad.fr/570078/)

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