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Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

Wu Guohong Albert, Prochnik Simon, Jenkins Jerry, Salse Jérôme, Hellsten Uffe, Murat Florent, Perrier Xavier, Ruiz Manuel, Scalabrin Simone, Terol Javier F., Takita Marco Aurélio, Labadie Karine, Poulain Julie, Couloux Arnaud, Jabbari Kamel, Cattonaro Frederica, Del Fabbro Cristian, Pinosio Sara, Zuccolo Andrea, Chapman Jarrod, Grimwood Jane, Tadeo Francisco, Estornell Leandro H., Muñoz-Sanz Juan V., Ibáñez Victoria, Herrero-Ortega Amparo, Aleza Pablo, Pérez-Pérez Júlian, Ramón Daniel, Brunel Dominique, Luro François, Chen Chunxian, Farmerie William G., Desany Brian, Kodira Chinnappa, Mohiuddin Mohammed, Harkins Tim, Fredrikson Karin, Burns Paul, Lomsadze Alexandre, Borodovsky Mark, Reforgiato Giuseppe, Freitas-Astúa Juliana, Quetier Francis, Navarro Luis, Roose Mikeal L., Wincker Patrick, Schmutz Jeremy, Morgante Michele, Machado Marcos Antonio, Talon Manuel, Ollitrault Patrick, Gmitter Frederick G. Jr., Rokhsar Daniel S.. 2014. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology, 32 : pp. 656-662.

Journal article ; Article de revue à facteur d'impact
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Use under authorization by the author or CIRAD.
document_573723.pdf

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Quartile : Outlier, Sujet : BIOTECHNOLOGY & APPLIED MICROBIOLOGY

Abstract : Cultivated citrus are selections from, or hybrids of, wild progenitor species whose identities and contributions to citrus domestication remain controversial. Here we sequence and compare citrus genomes-a high-quality reference haploid clementine genome and mandarin, pummelo, sweet-orange and sour-orange genomes-and show that cultivated types derive from two progenitor species. Although cultivated pummelos represent selections from one progenitor species, Citrus maxima, cultivated mandarins are introgressions of C. maxima into the ancestral mandarin species Citrus reticulata. The most widely cultivated citrus, sweet orange, is the offspring of previously admixed individuals, but sour orange is an F1 hybrid of pure C. maxima and C. reticulata parents, thus implying that wild mandarins were part of the early breeding germplasm. A Chinese wild 'mandarin' diverges substantially from C. reticulata, thus suggesting the possibility of other unrecognized wild citrus species. Understanding citrus phylogeny through genome analysis clarifies taxonomic relationships and facilitates sequence-directed genetic improvement. (Résumé d'auteur)

Mots-clés Agrovoc : Citrus, Agrume, Phylogénie, Taxonomie, Génome, Séquence nucléotidique, Domestication, Génie génétique, Citrus reticulata, Citrus maxima, Citrus sinensis, Citrus clementina

Classification Agris : F30 - Plant genetics and breeding
F70 - Plant taxonomy and geography

Champ stratégique Cirad : Axe 1 (2014-2018) - Agriculture écologiquement intensive

Auteurs et affiliations

  • Wu Guohong Albert, DOE-JGI (USA)
  • Prochnik Simon, DOE-JGI (USA)
  • Jenkins Jerry, HudsonAlpha Biotechnology Institute (USA)
  • Salse Jérôme, INRA (FRA)
  • Hellsten Uffe, DOE-JGI (USA)
  • Murat Florent, INRA (FRA)
  • Perrier Xavier, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0002-0092-003X
  • Ruiz Manuel, CIRAD-BIOS-UMR AGAP (COL) ORCID: 0000-0001-8153-276X
  • Scalabrin Simone, Università Di Udine (ITA)
  • Terol Javier F., IVIA (ESP)
  • Takita Marco Aurélio, IAC (BRA)
  • Labadie Karine, Institut de génomique (FRA)
  • Poulain Julie, Centre national de séquençage (FRA)
  • Couloux Arnaud, Centre national de séquençage (FRA)
  • Jabbari Kamel, CEA (FRA)
  • Cattonaro Frederica, Università Di Udine (ITA)
  • Del Fabbro Cristian, Università Di Udine (ITA)
  • Pinosio Sara, Università Di Udine (ITA)
  • Zuccolo Andrea, Università Di Udine (ITA)
  • Chapman Jarrod, DOE-JGI (USA)
  • Grimwood Jane, DOE-JGI (USA)
  • Tadeo Francisco, IVIA (ESP)
  • Estornell Leandro H., IVIA (ESP)
  • Muñoz-Sanz Juan V., IVIA (ESP)
  • Ibáñez Victoria, IVIA (ESP)
  • Herrero-Ortega Amparo, IVIA (ESP)
  • Aleza Pablo, IVIA (ESP)
  • Pérez-Pérez Júlian, Lifesequencing (ESP)
  • Ramón Daniel, Lifesequencing (ESP)
  • Brunel Dominique, Institut de génomique (FRA)
  • Luro François, INRA (FRA)
  • Chen Chunxian, University of Florida (USA)
  • Farmerie William G., University of Florida (USA)
  • Desany Brian, 454 Life Sciences (USA)
  • Kodira Chinnappa, 454 Life Sciences (USA)
  • Mohiuddin Mohammed, 454 Life Sciences (USA)
  • Harkins Tim, 454 Life Sciences (USA)
  • Fredrikson Karin, 454 Life Sciences (USA)
  • Burns Paul, Georgia Institute of Technology (USA)
  • Lomsadze Alexandre, Georgia Institute of Technology (USA)
  • Borodovsky Mark, Georgia Institute of Technology (USA)
  • Reforgiato Giuseppe, Consiglio per la Ricerca e la Sperimentazione in Agricoltura (ITA)
  • Freitas-Astúa Juliana, EMBRAPA (BRA)
  • Quetier Francis, Université d'Evry Val d'Essonne (FRA)
  • Navarro Luis, IVIA (ESP)
  • Roose Mikeal L., UCR (USA)
  • Wincker Patrick, Université d'Evry Val d'Essonne (FRA)
  • Schmutz Jeremy, DOE-JGI (USA)
  • Morgante Michele, Università Di Udine (ITA)
  • Machado Marcos Antonio, Centro de Citricultura Sylvio Moreira (BRA)
  • Talon Manuel, IVIA (ESP)
  • Ollitrault Patrick, CIRAD-BIOS-UMR AGAP (ESP) ORCID: 0000-0002-9456-5517
  • Gmitter Frederick G. Jr., University of Florida (USA)
  • Rokhsar Daniel S., DOE-JGI (USA)

Source : Cirad - Agritrop (https://agritrop.cirad.fr/573723/)

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