Muniraju Murali, Mahapatra Mana, Ayelet Gelagay, Babu A., Olivier G., Munir M., Libeau Geneviève, Batten Carrie, Banyard Ashley C., Parida Satya. 2016. Emergence of lineage IV peste des petits ruminants virus in Ethiopia: Complete genome sequence of an Ethiopian isolate 2010. Transboundary and Emerging Diseases, 63 (4) : 435-442.
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Quartile : Outlier, Sujet : VETERINARY SCIENCES / Quartile : Q2, Sujet : INFECTIOUS DISEASES
Résumé : Isolates of peste des petits ruminants virus (PPRV) can be segregated genetically into four lineages. For decades, lineages I–III have been reported across Africa whilst lineage IV has predominantly circulated across Asia. However, the lineage distribution is currently changing in Africa. Importantly, full genome sequence data for African field isolates have been lacking. Here, we announce the first complete genome sequence of a field isolate of peste des petits ruminants virus (PPRV) from East Africa. This isolate was derived from the intestine of a goat suffering from severe clinical disease during the 2010 outbreak in Ethiopia. The full genome sequence of this isolate, PPRV Ethiopia/2010, clusters genetically with other lineage IV isolates of PPRV, sharing high levels of sequence identity across the genome. Further, we have carried out a phylogenetic analysis of all of the available African partial N gene and F gene PPRV sequences to investigate the epidemiology of PPRV with a focus on the emergence of different lineages of PPRV in Africa.
Mots-clés Agrovoc : virus peste petits ruminants, peste des petits ruminants, épidémiologie, génome, séquence nucléotidique, phylogénie, lignée, chèvre
Mots-clés géographiques Agrovoc : Éthiopie, Afrique orientale
Mots-clés libres : Peste des petits ruminants, Lineage, Epidemiology, Genome sequencing, Phylogenetic analysis
Classification Agris : L73 - Maladies des animaux
Champ stratégique Cirad : Axe 4 (2014-2018) - Santé des animaux et des plantes
Auteurs et affiliations
- Muniraju Murali, The Pirbright Institute (GBR)
- Mahapatra Mana, The Pirbright Institute (GBR)
- Ayelet Gelagay, NVI (ETH)
- Babu A., The Pirbright Institute (GBR)
- Olivier G., INRA (FRA)
- Munir M., The Pirbright Institute (GBR)
- Libeau Geneviève, CIRAD-BIOS-UMR CMAEE (FRA)
- Batten Carrie, The Pirbright Institute (GBR)
- Banyard Ashley C., Institute for Animal Health (GBR)
- Parida Satya, The Pirbright Institute (GBR)
Source : Cirad-Agritrop (https://agritrop.cirad.fr/577860/)
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