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The genomes of several plant species contain endogenous geminiviral sequences

Filloux Denis, Murrell Sasha, Koohapitagtam M., Golden Michael, Julian Jacqueline, Galzi Serge, Uzest Marilyne, Rodier-Goud Marguerite, D'Hont Angélique, Vernerey Marie-Stéphanie, Wilkin P., Peterschmitt Michel, Winter Stephan, Murrell Ben, Martin Darren Patrick, Roumagnac Philippe. 2016. The genomes of several plant species contain endogenous geminiviral sequences. In : 8th International Geminivirus Symposium. University of Delhi, Jawaharlal Nehru University, Jamia Millia Islamia, ICAR-NRCPB , NIPGR, Indian Virological Society. s.l. : s.n., p. 1. International Geminivirus Symposium. 8, New Delhi, Inde, 7 November 2016/10 November 2016.

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Matériel d'accompagnement : 1 poster

Additional Information : A l'occasion de ce congrès s'est également déroulé le 6th International ssDNA Comparative Virology Workshop, du 7 au 10 Novembre 2016, New-Delhi, Inde

Abstract : Endogenous viral sequences are essentially 'fossil records' that can sometimes reveal the genomic features of long extinct virus species. Although numerous known instances exist of single-stranded DNA (ssDNA) genomes becoming stably integrated within the genomes of bacteria and animals, there remain very few examples of such integration events in plants. The best studied of these events are those which yielded the geminivirus-related DNA elements (GRD) and the geminivirus-like elements (EGV) found respectively within the nuclear genomes of several Nicotiana species and various Dioscorea spp. of the Enantiophyllum clade. Those two new classes of endogenous plant virus sequence are apparently derived from ancient geminiviruses in the genus Begomovirus. GRD and EGV sequences likely became integrated millions years ago. Interestingly, we found evidence of natural selection actively favouring the maintenance of EGV-expressed replication-associated protein (Rep) amino acid sequences, which clearly indicates that functional EGV Rep proteins were probably expressed for prolonged periods following endogenization. We recently found using in silico searches that other ssDNA virus-like sequences are included within complete or draft genomes of various plant species, including apple tree (Malus domestica), black cottonwood (Populus trichocarpa), various Coffea spp, eggplant (Solanum melongena), lettuce (lactuca sativa), and Tepary bean (Phaseolus acutifolius), which suggests that endogenous geminiviruses may be more common in plant genomes than has previously been appreciated. (Texte intégral)

Classification Agris : F30 - Plant genetics and breeding
H20 - Plant diseases

Auteurs et affiliations

  • Filloux Denis, CIRAD-BIOS-UMR BGPI (FRA)
  • Murrell Sasha, UCT (ZAF)
  • Koohapitagtam M., Prince of Songkla University (THA)
  • Golden Michael, Institute of Infectious Diseases and Molecular Medicine (ZAF)
  • Julian Jacqueline, CIRAD-DGDRD-DRH (FRA)
  • Galzi Serge, CIRAD-BIOS-UMR BGPI (FRA)
  • Uzest Marilyne, INRA (FRA)
  • Rodier-Goud Marguerite, CIRAD-DG-EVALUATION (FRA)
  • D'Hont Angélique, CIRAD-BIOS-UMR AGAP (FRA)
  • Vernerey Marie-Stéphanie, INRA (FRA)
  • Wilkin P., Royal Botanic Gardens (GBR)
  • Peterschmitt Michel, CIRAD-BIOS-UMR BGPI (FRA)
  • Winter Stephan, Leibniz Institute DSMZ (DEU)
  • Murrell Ben, UCR (USA)
  • Martin Darren Patrick, UCT (ZAF)
  • Roumagnac Philippe, CIRAD-BIOS-UMR BGPI (FRA) ORCID: 0000-0001-5002-6039

Source : Cirad-Agritrop (https://agritrop.cirad.fr/582179/)

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