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The ontologies community of practice: A CGIAR initiative for big data in agrifood systems

Arnaud Elizabeth, Laporte Marie-Angélique, Kim Soonho, Aubert Céline, Leonelli Sabina, Cooper Laurel, Jaiswal Pankaj, Kruseman Gideon, Shrestha Rosemary, Buttigieg Pier Luigi, Mungall Christopher J., Pietragalla Julian, Agbona Afolabi, Muliro Jacqueline, Detras Jeffrey, Hualla Vilma, Rathore Abhishek, Das Roma, Dieng Ibnou, Bauchet Guillaume, Menda Naama, Pommier Cyril, Shaw Felix, Lyon David A., Mwanzia Leroy, Juarez Henry, Bonaiuti Enrico, Chiputwa Brian, Obileye Olatunbosun, Auzoux Sandrine, Dzalé Yeumo Esther, Mueller Lukas, Silverstein Kevin, Lafargue Alexandra, Antezana Erick, Devare Medha, King Brian. 2020. The ontologies community of practice: A CGIAR initiative for big data in agrifood systems. Patterns, 1 (7):100105, 13 p.

Journal article ; Article de recherche ; Article de revue à comité de lecture Revue en libre accès total
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Abstract : Heterogeneous and multidisciplinary data generated by research on sustainable global agriculture and agrifood systems requires quality data labeling or annotation in order to be interoperable. As recommended by the FAIR principles, data, labels, and metadata must use controlled vocabularies and ontologies that are popular in the knowledge domain and commonly used by the community. Despite the existence of robust ontologies in the Life Sciences, there is currently no comprehensive full set of ontologies recommended for data annotation across agricultural research disciplines. In this paper, we discuss the added value of the Ontologies Community of Practice (CoP) of the CGIAR Platform for Big Data in Agriculture for harnessing relevant expertise in ontology development and identifying innovative solutions that support quality data annotation. The Ontologies CoP stimulates knowledge sharing among stakeholders, such as researchers, data managers, domain experts, experts in ontology design, and platform development teams.

Mots-clés Agrovoc : systèmes agroalimentaires, ontologie, Gestion de données, Traitement des données, norme sémantique, bonnes pratiques, Meilleure pratique, interopérabilité, métadonnées

Mots-clés complémentaires : interopérabilité sémantique, big data

Mots-clés libres : Ontologies, Agriculture, Agrifood systems, Big data, FAIR data, Data annotation, Semantics for Agriculture, Community of Practice

Classification Agris : A50 - Agricultural research
C30 - Documentation and information

Champ stratégique Cirad : CTS 3 (2019-) - Systèmes alimentaires

Agence(s) de financement européenne(s) : European Commission

Programme de financement européen : FP7, H2020

Projet(s) de financement européen(s) : Trans-national Infrastructure for Plant Genomic Science, ELIXIR-EXCELERATE: Fast-track ELIXIR implementation and drive early user exploitation across the life-sciences

Auteurs et affiliations

  • Arnaud Elizabeth, Bioversity International (FRA) - auteur correspondant
  • Laporte Marie-Angélique, Bioversity International (FRA)
  • Kim Soonho, IFPRI (USA)
  • Aubert Céline, Bioversity International (FRA)
  • Leonelli Sabina, University of Exeter (GBR)
  • Cooper Laurel, Oregon State University (USA)
  • Jaiswal Pankaj, Oregon State University (USA)
  • Kruseman Gideon, CIMMYT (MEX)
  • Shrestha Rosemary, CIMMYT (MEX)
  • Buttigieg Pier Luigi, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research (DEU)
  • Mungall Christopher J., Lawrence Berkeley National Laboratory (USA)
  • Pietragalla Julian, Integrated Breeding Platform (MEX)
  • Agbona Afolabi, IITA (NGA)
  • Muliro Jacqueline, WorldFish (MYS)
  • Detras Jeffrey, IRRI (PHL)
  • Hualla Vilma, CIP (PER)
  • Rathore Abhishek, ICRISAT (IND)
  • Das Roma, ICRISAT (IND)
  • Dieng Ibnou, Centre du riz pour l'Afrique (BEN)
  • Bauchet Guillaume, Boyce Thompson Institute for Plant Research (USA)
  • Menda Naama, Boyce Thompson Institute for Plant Research (USA)
  • Pommier Cyril, INRAE (FRA)
  • Shaw Felix, Earlham Institute (GBR)
  • Lyon David A., Boyce Thompson Institute for Plant Research (USA)
  • Mwanzia Leroy, Bioversity International (FRA)
  • Juarez Henry, CIP (PER)
  • Bonaiuti Enrico, ICARDA (UZB)
  • Chiputwa Brian, ICRA (KEN)
  • Obileye Olatunbosun, IITA (NGA)
  • Auzoux Sandrine, CIRAD-PERSYST-UPR AIDA (FRA) ORCID: 0000-0002-8764-8672
  • Dzalé Yeumo Esther, INRAE (FRA)
  • Mueller Lukas, Boyce Thompson Institute for Plant Research (USA)
  • Silverstein Kevin, University of Minnesota (USA)
  • Lafargue Alexandra, Syngenta (FRA)
  • Antezana Erick, Bayer CropScience (BEL)
  • Devare Medha, IFPRI (USA)
  • King Brian, CGIAR (COL)

Source : Cirad-Agritrop (https://agritrop.cirad.fr/596499/)

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