SHiNeMaS: a web tool dedicated to seed lots history, phenotyping and cultural practices

De Oliveira Yannick, Burlot Laura, Dawson Julie C., Goldringer Isabelle, Madi Darkawi, Rivière Pierre, Steinbach Delphine, Van Frank Gaëlle, Thomas Mathieu. 2020. SHiNeMaS: a web tool dedicated to seed lots history, phenotyping and cultural practices. Plant Methods, 16:98, 9 p.

https://doi.org/10.1186/s13007-020-00640-2

Article de revue ; Autre type d'article ; Article de revue à facteur d'impact Revue en libre accès total

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de Oliveira - BMC Plant Methods - 2020 - SHinemas
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Quartile : Q1, Sujet : BIOCHEMICAL RESEARCH METHODS / Quartile : Q1, Sujet : PLANT SCIENCES

Résumé : Motivation: In 2005, researchers from the French National Research Institute for Agriculture, Food and Environment (Institut national de recherche pour l'agriculture, l'alimentation et l'environnement, INRAE) started a collaboration with the French farmers' seed network Réseau Semences Paysannes (RSP) on bread wheat participatory breeding (PPB). The aims were: (1) to study on-farm management of crop diversity, (2) to develop population-varieties adapted to organic and low-inputs agriculture, (3) to co-develop tools and methods adapted to on-farm experiments. In this project, researchers and farmers' organizations needed to map the history and life cycle of the population-varieties using network formalism to represent relationships between seed lots. All this information had to be centralized and stored in a database. Results: We describe here SHiNeMaS (Seeds History and Network Management System) a web tool database. SHiNeMaS aims to provide useful interfaces to track seed lot history and related data (phenotyping, environment, cultural practices). Although SHiNeMaS has been developed in the context of a bread wheat participatory breeding program, the database has been designed to manage any kind and even multiple cultivated plant species. SHiNeMaS is available under Affero GPL licence and uses free technologies such as the Python language, Django framework or PostgreSQL database management system (DBMS). Conclusion: We developed SHiNeMaS, a web tool database, dedicated to the management of the history of seed lots and related data like phenotyping, environmental information and cultural practices. SHiNeMaS has been used in production in our laboratory for 5 years and farmers' organizations facilitators manage their own information in the system.

Mots-clés Agrovoc : Triticum, blé, grain, développement logiciel, banque de données, amélioration des plantes, lignée, ascendance, phénotype, mode de culture

Mots-clés géographiques Agrovoc : France

Mots-clés libres : Database, Plant Breeding, Software

Classification Agris : F30 - Génétique et amélioration des plantes
U10 - Informatique, mathématiques et statistiques

Champ stratégique Cirad : CTS 1 (2019-) - Biodiversité

Agences de financement européennes : European Commission

Programme de financement européen : H2020

Projets sur financement : (EU) Embedding crop diversity and networking for local high quality food systems

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