Biochemical characterization of the genetic resources of wild coffee trees collection in Réunion using near infrared spectroscopy

Davrieux Fabrice, Lallemand Laura, Minier Jérôme, Hoarau Mathilde, Soria Christian, Joët Thierry, Boulanger Renaud, Durand Noel. 2021. Biochemical characterization of the genetic resources of wild coffee trees collection in Réunion using near infrared spectroscopy. In : 28th Conference of Association for the Science and Information on Coffee - Books of abstracts. ASIC. Montpellier : ASIC, Résumé, p. 91. Conference of Association for the Science and Information on Coffee (ASIC 2021). 28, Montpellier, France, 28 Juin 2021/1 Juillet 2021.

Résumé : RATIONALE - Near infrared spectroscopy (NIRS) has been widely used for green coffees characterization and especially for the quantification of the main chemical constituents. The CIRAD database contains more than 2210 spectra and efficient calibrations for major constituents. However, this database is mostly constituted of Coffea arabica and C. canephora, which limits its representativeness. In order to enhance the database robustness, the analysis of wild coffee species has been undertaken. METHODS - Over 4 years, 462 seed samples, from 32 species, were collected on individual trees from the Coffea Biological Resources Centre in Réunion. Ground dried samples were analyzed for their absorbance spectrum using a FOSS 6500 monochromator (FOSS, Hillerod, Denmark). A selection, based on spectra, of the 90 most representatives samples was done using PCA and Mahalanobis neighborhood distances. The selected samples were analyzed for their caffeine, trigonelline, fat and chlorogenic acids (CGA) contents using standard analytical chemistry protocols. RESULTS - The distance threshold corresponding to the neighborhood was 0.55. The 90 samples came from 22 different coffee species. The caffeine content ranged from 0 to 3.3%, trigonelline from 0.25 to 1.52%, CGA from 0,22% to 10,53% and fat from 7.12% to 34,45% (dmb). The enhanced predicted models using this new data set present standard errors of 0.08%, 0.07%, 0.58% and 0.48% for respectively caffeine, trigonelline, CGA and fat. These performances are close to original models ones, with an increase of the content ranges, especially for fat. CONCLUSIONS & PERSPECTIVES - This study demonstrated the efficiency of the use of genetic diversity to enhance the robustness of the database. This approach lead to a real increase of the range for caffeine and fat contents. Thus, the resulting calibrations cover a larger range of values without significant losses of accuracy. The use of Mahalanobis distances permitted an efficient improvement of the calibrations representativeness with a limited number of samples. The new calibrations will be applied to the whole database in order to describe biochemical diversity in wild coffee species. The study will also be pushed forward to other chemicals such as fatty acid composition and diterpenes profiles.

Auteurs et affiliations

• Davrieux Fabrice, CIRAD-PERSYST-UMR Qualisud (REU)
• Lallemand Laura, CIRAD-PERSYST-UMR Qualisud (REU)
• Minier Jérôme, CIRAD-PERSYST-UMR Qualisud (REU) ORCID: 0000-0002-5993-4663
• Hoarau Mathilde, CIRAD-PERSYST-UMR Qualisud (REU)
• Soria Christian, CIRAD-PERSYST-UMR Qualisud (REU) ORCID: 0000-0002-7235-7872
• Joët Thierry, IRD (REU)
• Boulanger Renaud, CIRAD-PERSYST-UMR Qualisud (FRA) ORCID: 0000-0001-9396-5634
• Durand Noel, CIRAD-PERSYST-UMR Qualisud (FRA) ORCID: 0000-0003-1627-6848

Source : Cirad-Agritrop (https://agritrop.cirad.fr/600736/)

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