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ClimaLoca Project: fostering innovations for cadmium reduction in cocoa beans in Colombia, Ecuador, and Peru. Sounigo Olivier, Da silva M.A., Argout Xavier, Atkinson Richard, Rodriguez Medina C., Loor G., Chavez E., Sierra L., Pulleman Mirjam. 2023. In : VIII Scientific Wallace Conference - Proceedings. Casanoves F. (ed.), Mercado L. (ed.), Argüello M. (ed.), Abadie C. (ed.), Benegas L. (ed.), Cerda R. (ed.), Imbach P. (ed.), Madrigal R. (ed.), Martínez-Salinas A. (ed.), Muschler R. (ed.), Sepúlveda C. (ed.), Vílchez S. (ed.). CATIE. Turrialba : CATIE, Résumé, p. 31. (Serie Divulgativa, 24) ISBN 978-9977-57-795-1 Scientific Wallace Conference. 8, Turrialba, Costa Rica, 31 Mai 2023/2 Juin 2023.

Realized genetic gain in rice: Achievements from breeding programs. Seck Fallou, Covarrubias-Pazaran Giovanny, Gueye Tala, Bartholome Jérôme. 2023. Rice, 16:61, 22 p.

Evaluation of adaptation and yield stability of cocoa progenies in marginal conditions: Results from an on farm cocoa trial set up in a forest-savannah transition area in Cameroon. Feumba De Tchoua Le Blanc, Sounigo Olivier, Bourgoing Raymond, Efombagn Mousseni Ives Bruno, Abolo Dieudonné, Ambang Zachée, Cilas Christian. 2021. Crops, 1 (1) : 20-29.

Cacao breeding in Colombia, past, present and future. Rodriguez-Medina Caren, Caicedo Arana Alvaro, Sounigo Olivier, Argout Xavier, Alvarado Alvarado Gabriel, Yockteng Roxana. 2020. Breeding Science, 69 (3) : 373-382.

The South Green Genome Hubs. Droc Gaëtan, Argout Xavier, Bocs Stéphanie, Comte Aurore, Dereeper Alexis, Dufayard Jean François, Garsmeur Olivier, Gkanogiannis Anestis, Guignon Valentin, Hamelin Chantal, Lopez David, Oubda Nicolas, Martin Guillaume, Ravel Sébastien, Ruiz Manuel, Summo Marilyne, Thomas Coline, Tranchant-Dubreuil Christine, Rouard Mathieu. 2020. . SFBI, IFB, GDR-BIM. Montpellier : SFBI, 1 p. Journées ouvertes de biologie, informatique et mathématique (JOBIM 2020), Montpellier, France, 30 Juin 2020/3 Juillet 2020.

Study of the genetic diversity of cocoa populations (Theobroma cacao L.) of Martinique (FWI) and potential for processing and the cocoa industry. Adenet Sandra, Regina Françoise, Rogers Dominique, Bharath Sarah, Argout Xavier, Rochefort Katia, Cilas Christian. 2020. Genetic Resources and Crop Evolution, 67 : 1969-1979.

Early Cacao Use in the Upper Amazon of South America. Zarrillo Sonia, Gaikwad Nilesh, Lanaud Claire, Powis Terry, Viot Christopher, Lesur Isabelle, Fouet Olivier, Argout Xavier, Guichoux Erwan, Salin Franck, Solorzano Rey Loor, Bouchez Olivier, Vignes Hélène, Severts Patrick, Hurtado Julio, Yepez Alexandra, Grivetti Louis, Blake Michael, Valdez Francisco. 2019. . Vancouver : Society of Ethnobiology, Résumé, 1 p. Annual Conference of the Society of Ethnobiology. 42, Vancouver, Canada, 8 Mai 2019/11 Mai 2019.

Assessment of genetic diversity and structure in cocoa trees (Theobroma cacao L.) in Côte d'Ivoire with reference to their susceptibility to Cocoa swollen shoot virus disease (CSSVD). Guiraud Boguinard Sahin Hono, Tahi G.Mathias, Fouet Olivier, Trebissou Caudou Inago, Pokou N. Desiré, Rivallan Ronan, Argout Xavier, Koffi Kouame Christophe, Koné Boaké, Zoro Bi Arsène Irié, Lanaud Claire. 2018. Tree Genetics and Genomes, 14 (52), 21 p.

The Guiana cacao genetic group (Theobroma cacao L.): A new core collection in French Guiana. Lachenaud Philippe, Clément Didier, Argout Xavier, Scalabrin Simone, Doare Fabien. 2018. Botany Letters, 165 (2) : 248-254.

Identification of new sources of resistance to RHBV- rice hoja blanca virus. Cruz-Gallego Maribel, Rebolledo Cid Maria Camila, Cuasquer Juan, Cruz Daniel F., Peña-Fernández Alexandra Lorena, Quintero Constanza, Silva-Córdoba Alexander, Alvarez María Fernanda, Jojoa-Cruz Sebastián, Lorieux Mathias, Stuart Jeffrey J., Correa Fernando. 2018. Acta Agronomica, 67 (2) : 368-374.

Progress in varietal improvement for increasing upland rice productivity in the tropics. Saito Kazuki, Asai Hidetoshi, Zhao Dule, Laborte Alice G., Grenier Cécile. 2018. Plant Production Science, 21 (3) : 145-158.

The use and domestication of Theobroma cacao during the mid-Holocene in the upper Amazon. Zarrillo Sonia, Gaikwad Nilesh, Lanaud Claire, Powis Terry, Viot Christopher, Lesur Isabelle, Fouet Olivier, Argout Xavier, Guichoux Erwan, Salin Franck, Loor Solorzano Rey Gaston, Bouchez Olivier, Vignes Hélène, Severts Patrick, Hurtado Julio, Yepez Alexandra, Grivetti Louis, Blake Michael, Valdez Francisco. 2018. Nature Ecology and Evolution, 2 : 1879-1888.

The Agronomic Linked Data (AgroLD) Project. [P0322]. Larmande Pierre, Ruiz Manuel, El Hassouni Nordine, Venkatesan Aravind. 2017. In : Proceedings Plant and Animal Genome XXV Conference. San Diego : PAG, 1 p. Plant and Animal Genome Conference. 25, San Diego, États-Unis, 14 Janvier 2017/18 Janvier 2017.

Desarrollo de nichos específicos de cacao con alta productividad y calidad sensorial: experiencia ecuatoriana. Loor Rey Gaston, Amores Fredy, Vasco S.A., Eskes Albertus, Quiroz James G., Suárez C., Motamayor Juan Carlos, Schnell R.J., Zambrano Jorge, Calderón Darío, Jimenez Juan Carlos, Tarqui O., Rosenquist Eric, Lanaud Claire, Fouet Olivier, Argout Xavier, Valdez Francisco, Lachenaud Philippe, Costet Pierre, Quijano G.C., Teran M.M., Sotomayor Cantos Ignacio Antonio, Casanova T., Subia Cristian. 2017. In : Proceedings of the International Symposium on Cocoa Research 2017. ICCO. Lima : ICCO, 15 p. International Symposium on Cocoa Research (ISCR 2017). 1, Lima, Pérou, 13 Novembre 2017/17 Novembre 2017.

Domestication rewired gene expression and nucleotide diversity patterns in tomato. Sauvage Christopher, Rau Andrea, Aichholz Charlotte, Chadoeuf Joël, Sarah Gautier, Ruiz Manuel, Santoni Sylvain, Causse Mathilde, David Jacques, Glemin Sylvain. 2017. Plant Journal, 91 (4) : 631-645.

Evolutionary forces affecting synonymous variations in plant genomes. Clément Yves, Sarah Gautier, Holtz Yan, Homa Félix, Pointet Stéphanie, Contreras Sandy, Nabholz Benoit, Sabot François, Sauné Laure, Ardisson Morgane, Bacilieri Roberto, Besnard Guillaume, Berger Angélique, Cardi Céline, De Bellis Fabien, Fouet Olivier, Jourda Cyril, Khadari Bouchaib, Lanaud Claire, Leroy Thierry, Pot David, Sauvage Christopher, Scarcelli Nora, Tregear James, Vigouroux Yves, Yahiaoui Nabila, Ruiz Manuel, Santoni Sylvain, Labouisse Jean-Pierre, Pham Jean Louis, David Jacques, Glemin Sylvain. 2017. PLoS Genetics, 13 (5):e1006799, 28 p.

Exploration of the T. cacao genome sequence to decipher the incompatibility system of Theobroma cacao and to identify diagnostic markers. Lanaud Claire, Fouet Olivier, Legavre Thierry, Lopes Uilson Vanderlei, Sounigo Olivier, Eyango Marie Claire, Mermaz Benoit, da Silva Marcos Ramos, Loor Solorzano Rey Gaston, Argout Xavier, Gyapay Gabor, Ebaiarrey Herman Ebai, Colonges Kelly, Sanier Christine, Rivallan Ronan, Mastin Géraldine, Cryer Nicholas, Boccara Michel, Efombagn Mousseni Ives Bruno, Gramacho Karina Peres, Clément Didier. 2017. In : Proceedings of the first International Symposium on Cocoa Research ISCR 2017. ICCO. Lima : ICCO, 11 p. International Symposium on Cocoa Research – ISCR 2017 : Promoting Advances in Research to Enhance the Profitability of Cocoa Farming. 1, Lima, Pérou, 13 Novembre 2017/17 Novembre 2017.

The Genomic Selection of Theobroma cacao: a new strategy of marker assisted selection to improve breeding efficiency and predict useful traits in new populations. [20]. Ribeyre Fabienne, Sounigo Olivier, Argout Xavier, Cilas Christian, Efombagn Mousseni Ives Bruno, Denis Marie, Bouvet Jean-Marc, Fouet Olivier, Lanaud Claire. 2017. In : Proceedings of the International Symposium on cocoa research. ICCO. Lima : ICCO, 7 p. International Symposium on Cocoa Research (ISCR 2017). 1, Lima, Pérou, 13 Novembre 2017/17 Novembre 2017.

Gigwa - Genotype Investigator for Genome-Wide Analyses. [P0442]. Ruiz Manuel, Sempere Guilhem, Petel Adrien, Dereeper Alexis, Gautier Sarah, Larmande Pierre. 2017. In : Proceedings Plant and Animal Genome XXV Conference. San Diego : PAG, 1 p. Plant and Animal Genome Conference. 25, San Diego, États-Unis, 14 Janvier 2017/18 Janvier 2017.

Using TropGeneDB: a database containing data on molecular markers, QTLs, maps, genotypes, and phenotypes for tropical crops. Ruiz Manuel, Sempere Guilhem, Hamelin Chantal. 2017. In : Plant genomics databases: methods and protocols. Van Dijk Aalt D.J. (ed.). New York : Springer [Etats-Unis], 161-172. (Methods in Molecular Biology, 1533) ISBN 978-1-4939-6656-1

The cacao Criollo genome v2.0: An improved version of the genome for genetic and functional genomic studies. Argout Xavier, Martin Guillaume, Droc Gaëtan, Fouet Olivier, Labadie Karine, Rivals Eric, Aury Jean-Marc, Lanaud Claire. 2017. BMC Genomics, 18:730, 9 p.

The cocoa genome hub, an integrated platform to access the Criollo genome V2. Argout Xavier, Martin Guillaume, Droc Gaëtan. 2017. In : Booklet of abstracts of the first International Symposium on Cocoa Research ISCR 2017. ICCO. Lima : ICCO, Résumé, 214-215. International Symposium on Cocoa Research – ISCR 2017 : Promoting Advances in Research to Enhance the Profitability of Cocoa Farming. 1, Lima, Pérou, 13 Novembre 2017/17 Novembre 2017.

A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives. Sarah Gautier, Homa Félix, Pointet Stéphanie, Contreras Sandy, Sabot François, Nabholz Benoit, Santoni Sylvain, Sauné Laure, Ardisson Morgane, Chantret Nathalie, Sauvage Christopher, Tregear James, Jourda Cyril, Pot David, Vigouroux Yves, Chaïr Hâna, Scarcelli Nora, Billot Claire, Yahiaoui Nabila, Bacilieri Roberto, Khadari Bouchaib, Boccara Michel, Barnaud Adeline, Péros Jean-Pierre, Labouisse Jean-Pierre, Pham Jean Louis, David Jacques, Glemin Sylvain, Ruiz Manuel. 2017. Molecular Ecology Resources, 17 (3) : 565-580.

Arroz biofortificado para bolivia - proyecto harvestplus. Viruez Juana, Yonekura P., Taboada Roger, Borrero Jaime, Grenier Cécile. 2016. In : Reunión Anual del Programa de Cooperación Centroamericana para el Mejoramiento de Cultivos y Animales: Resúmenes. INTA. San José : INTA, Résumé, 5. PCCMCA 2016. 61, San José, Costa Rica, 5 Avril 2016/8 Avril 2016.

Avances en la selección de nuevos genotipos de arroz biofortificados Con zinc en Panamá. Camargo García Victor M., Camargo Buitrago Ismael, Quirós McIntire Evelyn, Barahona A., Quintero Vicente Jiménez Alexis, Zeballos Franklin, Rodriguez H., Montero Gabriel, Grenier Cécile. 2016. In : Reunión Anual del Programa de Cooperación Centroamericana para el Mejoramiento de Cultivos y Animales: Resúmenes. INTA. San José : INTA, Résumé, 5. PCCMCA 2016. 61, San José, Costa Rica, 5 Avril 2016/8 Avril 2016.

Biofortificación del arroz para américa latina y el caribe. Grenier Cécile, Borrero Jaime, Sanchez Aldo, Urbina Roger, Espinosa Alberto, Taboada Roger, Viruez Juana, Yonekura Alfredo, Camargo Buitrago Ismael, Ramirez J., Nutti Marilia. 2016. In : Reunión Anual del Programa de Cooperación Centroamericana para el Mejoramiento de Cultivos y Animales: Resúmenes. INTA. San José : INTA, Résumé, 6. PCCMCA 2016. 61, San José, Costa Rica, 5 Avril 2016/8 Avril 2016.

Combining image analysis, genome wide association studies and different field trials to reveal stable genetic regions related to panicle architecture and the number of spikelets per panicle in rice. Rebolledo Maria Camila, Peña Alexandra, Duitama Jorge, Cruz Daniel F., Dingkuhn Michael, Grenier Cécile, Tohmé Joe. 2016. Frontiers in Plant Science, 7:1384, 12 p.

Evaluación de la interacción genotipo por ambiente para la Acumulación de zinc en el grano pulido de arroz. Grenier Cécile, Sánchez Andres, Borrero Jaime, Cabrera Jose Luis, Sanchez Sory, Cuasquer Juan. 2016. In : Reunión Anual del Programa de Cooperación Centroamericana para el Mejoramiento de Cultivos y Animales: Resúmenes. INTA. San José : INTA, Résumé, 138. PCCMCA 2016. 61, San José, Costa Rica, 5 Avril 2016/8 Avril 2016.

Gigwa—Genotype investigator for genome-wide analyses. Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier, Larmande Pierre. 2016. GigaScience, 5 (25), 9 p.

La diversité génétique des plantes cultivées à l'heure de l'informatique génétique à haut débit: génomique comparative de la domestication. David Jacques, Glemin Sylvain, Sarah Gautier, Nabholz Benoit, Sabot François, Holtz Yan, Homa Félix, Pointet Stéphanie, Contreras Sandy, Sauné Laure, Ardisson Morgane, Bacilieri Roberto, Khadari Bouchaib, Lanaud Claire, Pot David, Sauvage Christopher, Scarcelli Nora, Tregear James, Vigouroux Yves, Yahiaoui Nabila, Ruiz Manuel, Santoni Sylvain, Labouisse Jean-Pierre, Pham Jean Louis. 2016. Le Sélectionneur Français (67) : 3-13.

The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics. Guignon Valentin, Hueber Yann, Rouard Mathieu, Bocs Stéphanie, Couvin David, De Lamotte Frédéric, Droc Gaëtan, Dufayard Jean François, El Hassouni Nordine, Farcy Cédric, Gkanogiannis Anestis, Hamelin Chantal, Larivière Delphine, Martin Guillaume, Ortega Enrique, Pitollat Bertrand, Pointet Stéphanie, Ruiz Manuel, Gautier Sarah, Summo Marilyne, This Dominique, Ravel Sébastien, Larmande Pierre, Monat Cécile, Sabot François, Tando Ndomassi, Tranchant-Dubreuil Christine, Sempere Guilhem, Dereeper Alexis. 2016. Current Plant Biology, 7-8 : 6-9.

Une architecture orientée services pour l'extraction de connaissances dans la base de données liées AgroLD. Tagny Ngompé Gildas, Venkatesan Aravind, El Hassouni Nordine, Ruiz Manuel, Larmande Pierre. 2016. Ingénierie des Systèmes d'Information, 21 (5-6), Le web de données : publication, liage et capitalisation : 133-157.

Accuracy of genomic selection in a rice synthetic population developed for recurrent selection breeding. Grenier Cécile, Cao Tuong-Vi, Ospina Yolima, Quintero Constanza, Châtel Marc, Tohmé Joe, Courtois Brigitte, Ahmadi Nourollah. 2015. PloS One, 10 (8):e0136594, 25 p.

DHOEM: a statistical simulation software for simulating new markers in real SNP marker data. Jacquin Laval, Cao Tuong-Vi, Grenier Cécile, Ahmadi Nourollah. 2015. BMC Bioinformatics, 16 (404), 8 p.

Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga. Arbelaez Juan David, Moreno Laura, Singh Namrata, Tung Chih-Wei, Maron Lyza G., Ospina Yolima, Martinez César. P, Grenier Cécile, Lorieux Mathias, McCouch Susan. 2015. Molecular Breeding, 35 (2) : 81-99.

Enabling knowledge management in the agronomic domain. W448. Larmande Pierre, Venkatesan Aravind, Ruiz Manuel, Sempere Guilhem, Valduriez Patrick. 2015. . San Diego : s.n., Résumé, 1 p. Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 Janvier 2015/14 Janvier 2015.

Genotype investigator for Genome Wide Analysis (GIGwA) [P1111]. Larmande Pierre, Sempere Guilhem, Philippe Florian, Dereeper Alexis, Ruiz Manuel, Sarah Gautier. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n., Résumé Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 Janvier 2015/14 Janvier 2015.

Interoperability and interpretation of phenotyping data: use of plant ontologies. Arnaud Elizabeth, Ansell P., Sirault X., Cooper Laurel, Jaiswal Pankaj, Pommier Cyril, Larmande Pierre, Ruiz Manuel. 2015. In : Recent progress in drought tolerance: from genetics to modelling conference handbook. Tardieu F. (ed.), Draye X. (ed.), Charcosset A. (ed.), Hammer G. (ed.), Usadel B. (ed.), Tuberosa R. (ed.), Welker C. (ed.), Boerner A. (ed.), Simic D.(ed.), Boller B. (ed.). Eucarpia, INRA. Montpellier : INRA-Transfert, Résumé, 96. EUCARPIA Conference "Recent progress in drought tolerance: from genetics to modelling", Montpellier, France, 8 Juin 2015/9 Juin 2015.

Modelling the population history using population genomics : the tomato domestication as a case of study. Sauvage Christopher, Aichholz Charlotte, Sarah Gautier, Ruiz Manuel, Causse Mathilde, David Jacques, Glemin Sylvain. 2015. In : The 12th Solanacae Conference SOL2015 book of abstracts. INRA. Villenave-d'Ornon : INRA, 97. Solanacae Conference (SOL2015). 12, Bordeaux, France, 25 Octobre 2015/29 Octobre 2015.

SNiPlay3: A web-based application for exploration and large scale analyses of genomic variations. Dereeper Alexis, Homa Félix, Andres Gwendoline, Sempere Guilhem, Sarah Gautier, Hueber Yann, Dufayard Jean François, Ruiz Manuel. 2015. Nucleic Acids Research, 43 (W1) : W295-W300.

Towards efficient data integration and knowledge management in the Agronomic domain. Venkatesan Aravind, El Hassouni Nordine, Philippe Florian, Pommier Cyril, Quesneville Hadi, Ruiz Manuel, Larmande Pierre. 2015. In : Actes APIA. AFIA. Rennes : AFIA, 117-124. Conférence sur les Applications Pratiques de l'Intelligence Artificielle. 1, Rennes, France, 2 Juillet 2015/3 Juillet 2015.

Transcriptome analysis of leaves and fruits of Coffea eugenioides. Yuyama Priscilla Mary, Ivamoto Suzana Tiemi, Carazzolle Marcelo Falsarella, Reis Júnior Osvaldo, Pereira Gonçalo Amarante Guimarães, Sakuray Leonardo M., Ruiz Manuel, Leroy Thierry, Charmetant Pierre, Domingues Douglas S., Pereira L.P.P.. 2015. In : Proceedings of the 25th International Conference on Coffee Science. ASIC. Paris : ASIC, 42-45. ISBN 978-2-900212-24-0 International Conference on Coffee Science. 25, Armenia, Colombie, 8 Septembre 2014/13 Septembre 2014.

African rices genome projects : GLASS and irigin : [P129]. Monat Cécile, Tranchant-Dubreuil Christine, Lorieux Mathias, Ghesquière Alain, Ruiz Manuel, Sabot François. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 Janvier 2014/15 Janvier 2014.

The Banana Genome Hub : [W079]. Droc Gaëtan, Larivière Delphine, Guignon Valentin, Yahiaoui Nabila, This Dominique, Garsmeur Olivier, Dereeper Alexis, Hamelin Chantal, Argout Xavier, Dufayard Jean-François, Lengellé Juliette, Baurens Franc-Christophe, Cenci Alberto, Pitollat Bertrand, D'Hont Angélique, Ruiz Manuel, Rouard Mathieu, Bocs Stéphanie. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 Janvier 2014/15 Janvier 2014.

Facilitating efficient knowledge management and discovery in the Agronomic Sciences. Venkatesan Aravind, Larmande Pierre, Jonquet Clément, Ruiz Manuel, Valduriez Patrick. 2014. . Amsterdam : Research Data Alliance, 1 poster Plenary Meeting: Agricultural Data Interoperability Interest Group. 4, Amsterdam, Pays-Bas, 22 Septembre 2014/24 Septembre 2014.

Positional cloning of the rice male sterility gene ms-IR36, widely used in the inter-crossing phase of recurrent selection schemes. Frouin Julien, Filloux Denis, Taillebois James E., Grenier Cécile, Montes Fabienne, De Lamotte Frédéric, Verdeil Jean-Luc, Courtois Brigitte, Ahmadi Nourollah. 2014. Molecular Breeding, 33 (3) : 555-567.

Rice Breeding in Latin America. Martinez César. P, Torres Edgar A., Châtel Marc, Mosquera Gloria, Duitama Jorge, Ishitani Manabu, Selvaraj M., Dedicova Beata, Tohmé Joe, Grenier Cécile, Lorieux Mathias, Cruz Maribel, Berrío Luis, Corredor Edgar, Zorrilla de San Martin Gonzalo, Breseghello Flavio, Peixoto Orlando, Colombari Filho Jose Manoel, Pereira de Castro Adriano, Iraçu Gindri Lopes Sergio, Barbosa Mara, Daltrozzo Funck Gustavo Rodrigo, Blanco Pedro H., Perez de Vida Fernando B., Molina Federico, Rosas Juan, Martínez Sebastián, Bonnecarrere Victoria, Garaycochea Silvia, Carracelas Gonzalo, Marin Alfredo, Correa-Victoria F.J., Camargo Ismael, Bruzzone Carlos Bernardo. 2014. In : Plant Breeding Reviews: Volume 38. Janick, J. (ed.). Hoboken : Wiley-Blackwell, 187-277. (Plant Breeding Reviews, 38) ISBN 978-1-118-91683-4

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Wu Guohong Albert, Prochnik Simon, Jenkins Jerry, Salse Jérôme, Hellsten Uffe, Murat Florent, Perrier Xavier, Ruiz Manuel, Scalabrin Simone, Terol Javier F., Takita Marco Aurélio, Labadie Karine, Poulain Julie, Couloux Arnaud, Jabbari Kamel, Cattonaro Frederica, Del Fabbro Cristian, Pinosio Sara, Zuccolo Andrea, Chapman Jarrod, Grimwood Jane, Tadeo Francisco, Estornell Leandro H., Muñoz-Sanz Juan V., Ibáñez Victoria, Herrero-Ortega Amparo, Aleza Pablo, Pérez-Pérez Júlian, Ramón Daniel, Brunel Dominique, Luro François, Chen Chunxian, Farmerie William G., Desany Brian, Kodira Chinnappa, Mohiuddin Mohammed, Harkins Tim, Fredrikson Karin, Burns Paul, Lomsadze Alexandre, Borodovsky Mark, Reforgiato Giuseppe, Freitas-Astúa Juliana, Quetier Francis, Navarro Luis, Roose Mikeal L., Wincker Patrick, Schmutz Jeremy, Morgante Michele, Machado Marcos Antonio, Talon Manuel, Ollitrault Patrick, Gmitter Frederick G. Jr., Rokhsar Daniel S.. 2014. Nature Biotechnology, 32 : 656-662.

Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima). Nabholz Benoit, Sarah Gautier, Sabot François, Ruiz Manuel, Adam Hélène, Nidelet Sabine, Ghesquière Alain, Santoni Sylvain, David Jacques, Glemin Sylvain. 2014. Molecular Ecology, 23 (9) : 2210-2227.

The south green bioinformatics platform : [P988]. Rouard Mathieu, Dereeper Alexis, Droc Gaëtan, Sarah Gautier, Dufayard Jean-François, Guignon Valentin, Hamelin Chantal, Homa Félix, De Lamotte Frédéric, Larmande Pierre, Larivière Delphine, Sabot François, Sempere Guilhem, Summo Marilyne, Pitollat Bertrand, Pointet Stéphanie, This Dominique, Bocs Stéphanie, Ruiz Manuel. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 Janvier 2014/15 Janvier 2014.

The study of domestication reveals a loss of diversity, signature of selection and transcriptional modifications in tomato (Solanum lycopersicum). Sauvage Christopher, Nabholtz B., Gautier Sarah, Ruiz Manuel, Causse Mathilde, David Jacques, Glemin Sylvain. 2014. . Avignon : INRA, 9. Eucarpia Meeting, Vegetable section, Tomato Working group. 28, Avignon, France, 22 Avril 2014/25 Avril 2014.

Accuracy of genomic selection in a rice synthetic population developed for recurrent selection. Grenier Cécile, Cao-Hamadou Tuong-Vi, Ospina Yolima, Tohmé Joe, Courtois Brigitte, Ahmadi Nourollah. 2013. In : 7th International Rice Genetics Symposium (RG7), Manila, Philippines, 5-8 November 2013. International Rice Research Institute. s.l. : s.n., Résumé, 1 p. International Rice Genetics Symposium. 7, Manille, Philippines, 5 Novembre 2013/8 Novembre 2013.

Canopy temperature as field phenotyping trait for rainfed-lowland rice breeding program for drought tolerance. Audebert Alain, Grenier Cécile, Ospina Yolima, Selvaraj M., Jaramillo S., Rodriguez Francisco, Dardou Audrey, Abdourasmane K., Sow Mounirou, Futakuchi Koichi, Venuprasad R., Ndjiondjop Marie-Noëlle. 2013. In : La science rizicole pour la sécurité alimentaire à travers le renforcement de l'agriculture familiale et l'agro-industrie en Afrique : 3ème Congrès du riz en Afrique 2013, 21-24 octobre 2013, Yaoundé, Cameroun. Programme et résumés. Centre du riz pour l'Afrique, IRAD, FAO. Cotonou : ADRAO [Centre du Riz pour l'Afrique], Résumé, 32. Africa Rice Congress. 3, Yaoundé, Cameroun, 21 Octobre 2013/24 Octobre 2013.

Designing efficient drought tolerant lines adapted to lowland ecosystems in West Africa using marker-assisted recurrent selection (MARS). Ndjiondjop Marie-Noëlle, Venuprasad R., Futakuchi Koichi, Dieng I., Sow Mounirou, Cissé F., Hema Drissa, Maji A.T., Grenier Cécile, Selvaraj M., Audebert Alain, Kumar A., Ahmadi Nourollah. 2013. In : La science rizicole pour la sécurité alimentaire à travers le renforcement de l'agriculture familiale et l'agro-industrie en Afrique : 3ème Congrès du riz en Afrique 2013, 21-24 octobre 2013, Yaoundé, Cameroun. Programme et résumés. Centre du riz pour l'Afrique, IRAD, FAO. Cotonou : ADRAO [Centre du Riz pour l'Afrique], 170. Africa Rice Congress. 3, Yaoundé, Cameroun, 21 Octobre 2013/24 Octobre 2013.

Variations in genomic DNA methylation during the long-term in vitro proliferation of oil palm embryogenic suspension cultures. Rival Alain, Ilbert Pascal, Labeyrie Axel, Torres Esperanza, Doulbeau Sylvie, Personne Aline, Dussert Stéphane, Beulé Thierry, Durand-Gasselin Tristan, Tregear James, Jaligot Estelle. 2013. Plant Cell Reports, 32 (3) : 359-368.

Molecular tagging and validation of microsatellite markers linked to the low germination stimulant gene (lgs) for Striga resistance in sorghum [Sorghum bicolor (L.) Moench]. Satish Kanuganti, Gutema Zenbala, Grenier Cécile, Rich Patrick J., Ejeta Gebisa. 2012. Theoretical and Applied Genetics, 124 (6) : 989-1003.

Population Improvement Through Recurrent Selection in Rice. Prospect for Maker Assisted Recurrent Selection and Genome-Wide Selection. W011. Grenier Cécile, Châtel Marc, Ospina Yolima, Cao Tuong-Vi, Guimaraes Elcio Perpetuo, Martinez César. P, Tohmé Joe, Courtois Brigitte, Ahmadi Nourollah. 2012. In : Plant and Animal Genome XX conference, San Diego, USA, January 14-18 2012,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 20, San Diego, États-Unis, 14 Janvier 2012/18 Janvier 2012.