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Connecting data for consumer preferences, food quality, and breeding in support of market-oriented breeding of root, tuber, and banana crops. Arnaud Elizabeth, Menda Naama, Tran Thierry, Asiimwe Amos, Kanaabi Michael, Meghar Karima, Forsythe Lora, Kawuki Robert Sezi, Ellebrock Bryan, Kayondo Ismail Siraj, Agbona Afolabi, Zhang Xiaofei, Mendes Thiago, Laporte Marie-Angélique, Nakitto Mariam, Ssali Reuben Tendo, Asfaw Asrat, Uwimana Brigitte, Ogbete Chukwudi, Makunde Godwill, Maraval Isabelle, Mueller Lukas, Bouniol Alexandre, Fauvelle Eglantine, Dufour Dominique. 2024. Journal of the Science of Food and Agriculture, 104 (8), n.spéc. Tropical roots, tubers and bananas: New breeding tools and methods to meet consumer preferences : 4514-4526.

East African highland cooking banana: Towards an efficient selection of hybrids with user-preferred food quality traits. Nowakunda Kephas, Khakasa Elizabeth, Ceballos Hernan, Kenneth Akankwasa, Tumuhimbise Robooni, Bugaud Christophe, Asasira Moreen, Uwimana Brigitte, Bouniol Alexandre, Nuwamanya Ephraim, Forsythe Lora, Marimo Pricilla, Dufour Dominique, Tushemereirwe Wilberforce. 2024. Journal of the Science of Food and Agriculture, 104 (8), n.spéc. Tropical roots, tubers and bananas: New breeding tools and methods to meet consumer preferences : 4551-4560.

Sensory characterization of the perceived quality of East African Highland Cooking Bananas (Matooke). Khakasa Elizabeth, Muyanja Charles, Mugabi Robert, Bugaud Christophe, Forestier-Chiron Nelly, Uwimana Brigitte, Arinaitwe Ivan Kabiita, Nowakunda Kephas. 2024. Journal of the Science of Food and Agriculture, 104 (8), n.spéc. Tropical roots, tubers and bananas: New breeding tools and methods to meet consumer preferences : 4907-4914.

Genetic mapping, candidate gene identification and marker validation for host plant resistance to the race 4 of Fusarium oxysporum f. sp. cubense using Musa acuminata ssp. malaccensis. Chen Andrew, Sun Jiaman, Viljoen Altus, Mostert Diane, Xie Yucong, Mangila Leroy, Bothma Sheryl, Lyons Rebecca, Hribova Eva, Christelová Pavla, Uwimana Brigitte, Amah Delphine, Pearce Stephen, Chen Ning, Batley Jacqueline, Edwards David P., Dolezel Jaroslav, Crisp Peter, Brown Allan F., Martin Guillaume, Yahiaoui Nabila, D'Hont Angélique, Coin Lachlan, Swennen Rony, Aitken Elizabeth A. B.. 2023. Pathogens, 12 (6), n.spéc. Current Research on Fusarium:820, 27 p.

Identification of a major QTL-Controlling resistance to the subtropical race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis. Chen Andrew, Sun Jiaman, Martin Guillaume, Gray Lesley-Ann, Hribova Eva, Christelová Pavla, Yahiaoui Nabila, Rounsley Steve, Lyons Rebecca, Batley Jacqueline, Chen Ning, Hamill Sharon, Rai Subash K., Coin Lachlan, Uwimana Brigitte, D'Hont Angélique, Dolezel Jaroslav, Edwards David P., Swennen Rony, Aitken Elizabeth A. B.. 2023. Pathogens, 12 (2), n.spéc. Current Research on Fusarium:289, 13 p.

Disentangling effects of altitude and shade cover on coffee fruit dynamics and vegetative growth in smallholder coffee systems. Sarmiento-Soler Alejandra, Rötter Reimund P., Hoffmann Munir P., Jassogne Laurence, Van Asten Piet J.A., Graefe Sophie, Vaast Philippe. 2022. Agriculture, Ecosystems and Environment, 326:107786, 16 p.

SNP-based genotyping and whole-genome sequencing reveal previously unknown genetic diversity in Xanthomonas vasicola pv. musacearum, causal agent of banana xanthomonas wilt, in its presumed Ethiopian origin. Nakato Gloria Valentine, Studholme David J., Blomme Guy, Grant Murray, Coutinho Teresa A., Were Evans M., Wicker Emmanuel, Mahuku George. 2021. Plant Pathology, 70 (3) : 534-543.

Effect of cropping system, shade cover and altitudinal gradient on coffee yield components at Mt. Elgon, Uganda. Sarmiento-Soler Alejandra, Vaast Philippe, Hoffmann Munir P., Jassogne Laurence, Van Asten Piet J.A., Graefe Sophie, Rötter Reimund P.. 2020. Agriculture, Ecosystems and Environment, 295:106887, 12 p.

Transfer of Xanthomonas campestris pv. arecae and X. campestris pv. musacearum to X. vasicola (Vauterin) as X. vasicola pv. arecae comb. nov. and X. vasicola pv. musacearum comb. nov. and Description of X. vasicola pv. vasculorum pv. nov. Studholme David J., Wicker Emmanuel, Muzemil Abrare Sadik, Aspin Andrew, Bogdanove Adam J., Broders Kirk, Dubrow Zoe, Grant Murray, Jones Jeffrey B., Karamura Deborah, Lang Jillian M., Leach Jan E., Mahuku George, Nakato Gloria Valentine, Coutinho Teresa A., Smith Julian, Bull Carolee T.. 2020. Phytopathology, 110 (6) : 1153-1160.

Variations in yield gaps of smallholder cocoa systems and the main determining factors along a climate gradient in Ghana. Abdulai Issaka, Hoffmann Munir P., Jassogne Laurence, Asare Richard, Graefe Sophie, Tao Hsiao-Hang, Muilerman Sander, Vaast Philippe, Van Asten Piet J.A., Läderach Peter, Rötter Reimund P.. 2020. Agricultural Systems, 181:102812, 8 p.

Xanthomonas wilt of banana drives changes in land-use and ecosystem services across infected landscapes. Ocimati Walter, Groot Jeroen C. J., Tittonell Pablo, Taulya Godfrey, Ntamwira Jules, Amato Serge, Blomme Guy. 2020. Sustainability, 12 (8):3178, 20 p.

Banana leaf pruning to facilitate annual legume intercropping as an intensification strategy in the East African highlands. Ocimati Walter, Ntamwira Jules, Groot Jeroen C. J., Taulya Godfrey, Tittonell Pablo, Dhed'a B., Van Asten Piet J.A., Vanlauwe Bernard, Ruhigwa B., Blomme Guy. 2019. European Journal of Agronomy, 110:125923, 12 p.

Ecosystem services and importance of common tree species in coffee-agroforestry systems: Local knowledge of small-scale farmers at Mt. Kilimanjaro, Tanzania. Wagner Sigrun, Rigal Clément, Liebig Theresa, Mremi Rudolf, Hemp Andreas, Jones Martin, Price Elizabeth, Preziosi Richard. 2019. Forests, 10 (11), n.spéc. Agroforestry Systems: The Role of Trees in Ecosystem Services:963, 16 p. World Congress on Agroforestry. 4, Montpellier, France, 20 Mai 2019/22 Mai 2019.

Integrating local knowledge with tree diversity analyses to optimize on-farm tree species composition for ecosystem service delivery in coffee agroforestry systems of Uganda. Bukomeko Hannington, Jassogne Laurence, Tumwebaze Susan Balaba, Eilu Gerald, Vaast Philippe. 2019. Agroforestry Systems, 93 (2) : 755-770.

Interactive effects of altitude, microclimate and shading system on coffee leaf rust. Liebig Theresa, Ribeyre Fabienne, Läderach Peter, Poehling Hans-Michael, Van Asten Piet J.A., Avelino Jacques. 2019. Journal of Plant Interactions, 14 (1) : 407-415.

Turning local knowledge on agroforestry into an online decision-support tool for tree selection in smallholders' farms. van der Wolf Just, Jassogne Laurence, Gram Gil, Vaast Philippe. 2019. Experimental Agriculture, 55 (S1), n.spéc. The options by context approach: A paradigm shift in agronomy : 50-66.

Water use of Coffea arabica in open versus shaded systems under smallholder's farm conditions in Eastern Uganda. Sarmiento-Soler Alejandra, Vaast Philippe, Hoffmann Munir P., Rötter Reimund P., Jassogne Laurence, Van Asten Piet J.A., Graefe Sophie. 2019. Agricultural and Forest Meteorology, 266-267 : 231-242.

A new multi locus variable number of tandem repeat analysis scheme for epidemiological surveillance of Xanthomonas vasicola pv. musacearum, the plant pathogen causing bacterial wilt on banana and enset. Nakato Gloria Valentine, Fuentes Rojas Juan Luis, Vernière Christian, Blondin Laurence, Coutinho Teresa A., Mahuku George, Wicker Emmanuel. 2019. PloS One, 14 (4):e0215090, 22 p.

Characterization of cocoa production, income diversification and shade tree management along a climate gradient in Ghana. Abdulai Issaka, Jassogne Laurence, Graefe Sophie, Asare Richard, Van Asten Piet J.A., Läderach Peter, Vaast Philippe. 2018. PloS One, 13 (4):e0195777, 17 p.

Cocoa agroforestry is less resilient to sub-optimal and extreme climate than cocoa in full sun. Abdulai Issaka, Vaast Philippe, Hoffmann Munir P., Asare Richard, Jassogne Laurence, Van Asten Piet J.A., Rötter Reimund P., Graefe Sophie. 2018. Global Change Biology, 24 (1) : 273-286.

Cocoa agroforestry is less resilient to suboptimal and extreme climate than cocoa in full sun: Reply to Norgrove (2017). Abdulai Issaka, Vaast Philippe, Hoffmann Munir P., Asare Richard, Jassogne Laurence, Van Asten Piet J.A., Rötter Reimund P., Graefe Sophie. 2018. Global Change Biology, 24 (5) : e733-e740.

Exploring adaptation strategies of coffee production to climate change using a process-based model. Rahn Eric, Vaast Philippe, Läderach Peter, Van Asten Piet J.A., Jassogne Laurence, Ghazoul Jaboury. 2018. Ecological Modelling, 371 : 76-89.

Influence of shaded systems on Xylosandrus compactus infestation in Robusta coffee along a rainfall gradient in Uganda. Bukomeko Hannington, Jassogne Laurence, Kagezi Godfrey, Mukasa David, Vaast Philippe. 2018. Agricultural and Forest Entomology, 20 (3) : 327-333.

Local and regional drivers of the African coffee white stem borer (Monochamus leuconotus) in Uganda. Liebig Theresa, Babin Régis, Ribeyre Fabienne, Läderach Peter, Van Asten Piet J.A., Poehling Hans-Michael, Jassogne Laurence, Cilas Christian, Avelino Jacques. 2018. Agricultural and Forest Entomology, 20 (4) : 514-522.

Local tree knowledge can fast-track agroforestry recommendations for coffee smallholders along a climate gradient in Mount Elgon, Uganda. Gram Gil, Vaast Philippe, van der Wolf Just, Jassogne Laurence. 2018. Agroforestry Systems, 92 (6) : 1625-1638.

Opportunities for sustainable intensification of coffee agro-ecosystems along an altitudinal gradient on Mt. Elgon, Uganda. Rahn Eric, Liebig Theresa, Ghazoul Jaboury, Van Asten Piet J.A., Läderach Peter, Vaast Philippe, Sarmiento Alejandra, Garcia Claude, Jassogne Laurence. 2018. Agriculture, Ecosystems and Environment, 263 : 31-40.

A highly specific tool for identification of Xanthomonas vasicola pv. musacearum based on five Xvm-specific coding sequences. Nakato Gloria Valentine, Wicker Emmanuel, Coutinho Teresa A., Mahuku George, Studholme David J.. 2018. Heliyon, 4 (12):e01080, 11 p.

Evaluating farmers' knowledge of shade trees in different cocoa agro-ecological zones in Ghana. Graefe Sophie, Meyer-Sand Lennart Flavio, Chauvette Katja, Abdulai Issaka, Jassogne Laurence, Vaast Philippe, Asare Richard. 2017. Human Ecology, 45 (3) : 321-332.

Towards a collaborative research: A case study on linking science to farmers' perceptions and knowledge on Arabica coffee pests and diseases and its management. Liebig Theresa, Jassogne Laurence, Rahn Eric, Läderach Peter, Poehling Hans-Michael, Kucel Patrick, Van Asten Piet J.A., Avelino Jacques. 2016. PloS One, 11 (8):e0159392, 23 p.

Mineral fertilizer response and nutrient use efficiencies of East African highland banana (Musa spp., AAA-EAHB, cv. Kisansa). Nyombi Kenneth, Van Asten Piet J.A., Corbeels Marc, Taulya Godfrey, Leffelaar Peter A., Giller Ken E.. 2010. Field Crops Research, 117 (1) : 38-50.

Towards understanding factors that govern fertilizer response in cassava: lessons from East Africa. Fermont Anneke M., Tittonell Pablo, Baguma Yona, Ntawuruhunga Pheneas, Giller Ken E.. 2010. Nutrient Cycling in Agroecosystems, 88 (1) : 133-151.

Allometric growth relationships of East Africa highland bananas (Musa AAA-EAHB) cv. Kisansa and Mbwazirume. Nyombi Kenneth, Van Asten Piet J.A., Leffelaar Peter A., Corbeels Marc, Kaizzi C.K., Giller Ken E.. 2009. Annals of Applied Biology, 155 (3) : 403-418.

Closing the cassava yield gap: An analysis from smallholder farms in East Africa. Fermont Anneke M., Van Asten Piet J.A., Tittonell Pablo, Van Wijk Mark T., Giller Ken E.. 2009. Field Crops Research, 112 (1) : 24-36.

Phylogenetic analysis of geographically diverse Radopholus similis via rDNA sequence reveals a monomorphic motif. Kaplan D.T., Thomas W.K., Frisse L.M., Sarah Jean-Louis, Stanton J.M., Speijer P.R., Marin D.H., Opperman C.H.. 2000. Journal of Nematology, 32 (2) : 134-142.

Coffea Arabica water use in open versus shaded systems under smallholder's farm conditions in Eastern Uganda. Sarmiento-Soler Alejandra, Vaast Philippe, Hoffmann Munir P., Rötter Reimund P., Jassogne Laurence, Van Asten Piet J.A., Graefe Sophie. 2019. In : 27th Biennial ASIC Conference, Portland, 16-20 September 2018. Book of abstracts 2019. ASIC, SCA. Portland : ASIC, Résumé, 1 p. Biennial ASIC Conference. 27, Portland, États-Unis, 16 Septembre 2018/20 Septembre 2018.

Climate-smart coffee systems in East Africa. Jassogne Laurence, Van Asten Piet J.A., Läderach Peter, Craparo S., Liebig Theresa, Rahn Eric, Baca Maria, Graefe Sophie, Whitbread Anthony M., Nibasumba Anaclet, Ampaire Edidah, Kagezi Godfrey, Vaast Philippe. 2015. In : Building tomorrow’s research agenda and bridging the science-policy gap. CIRAD, INRA, IRD, Agropolis International, Wageningen UR, CGIAR, UCDAVIS, FAO, Agreenium, GFAR. Montpellier : CIRAD, Résumé, 73. Climate-Smart Agriculture 2015 : Global Science Conference. 3, Montpellier, France, 16 Mars 2015/18 Mars 2015.

Climate-smart intensification of West-Africa's cocoa systems. [P14]. Van Asten Piet J.A., Jassogne Laurence, Vaast Philippe, Läderach Peter, Schroth Götz, Lundy Mark, Asare Richard, Muilerman Sander, Ruf François, Snoeck Didier, Koko L.K., Anim-Kwapong Gilbert, Rossing Walter A.H., Gockwoski James, Giller Ken E., Six Johan, Vanlauwe Bernard. 2015. In : Building tomorrow’s research agenda and bridging the science-policy gap. CIRAD, INRA, IRD, Agropolis International, Wageningen UR, CGIAR, UC Davis, FAO, Agreenium, GFAR. Montpellier : CIRAD, Résumé, 95. Climate Smart Agriculture 2015 : Global Science Conference. 3, Montpellier, France, 16 Mars 2015/18 Mars 2015.

A review of the status and progress in management research of the black coffee twig borer, Xylosandrus compactus (Eichhoff) in Uganda. Kagezi Godfrey, Kucel Patrick, Egonyu J.P., Kyamanywa S., Karungi J.T., Pinard Fabrice, Jaramillo J., Van Asten Piet J.A., Wagoire W.W., Ngabirano H.. 2015. In : Proceedings of the 25th International Conference on Coffee Science. ASIC. Paris : ASIC, 42-52. ISBN 978-2-900212-24-0 International Conference on Coffee Science. 25, Armenia, Colombie, 8 Septembre 2014/13 Septembre 2014.

A MLVA scheme for the analysis of population genetic diversity and structure of Xanthomonas vasicola pv. musacearum. Nakato Gloria Valentine, Fuentes Rojas Juan Luis, Vernière Christian, Blondin Laurence, Mahuku George, Coutinho Teresa A., Wicker Emmanuel. 2018. . Halle-sur-Saale : s.n., 1 poster Xanthomonas Genomics Conference 2018. 6, Halle-sur-Saale, Allemagne, 18 Juillet 2018/21 Juillet 2018.

Characterisation of microclimatic indicators in coffee production systems under varying biophysical contexts and its relation to fungal coffee diseases. Liebig Theresa, Ribeyre Fabienne, Laederach Peter, Jassogne Laurence, Poehling Hans-Michael, Van Asten Piet J.A., Avelino Jacques. 2016. . Kunming : s.n., 2 p. International Conference on Coffee Science (ASIC 2016). 26, Kunming, Chine, 13 Novembre 2016/19 Novembre 2016.

NIRS Calibration for dry matter & texture on fresh matooke at IITA & NaCRRI Uganda. High-Throughput Phenotyping Protocols (HTPP), WP3. Meghar Karima, Acayo Jennifer, Nuwamanya Ephraim, Davrieux Fabrice (collab.). 2022. Namulonge : RTBfoods Project-CIRAD, 9 p.

State of knowledge on breeding for quality roots, tubers and cooking bananas. Integrated end-user focused breeding for VUE (Variety, User, socio-economic Environment), WP4. Chaïr Hâna, Ceballos Hernan, Kawuki Robert Sezi, Nuwamanya Ephraim, Williams Esuma, Egesi Chiedozie, Amele Asrat, Obidiegwu Jude, Kouakou Amani Michel, Cormier Fabien, Mendes Thiago, Mwanga Robert O. M., Uwimana Brigitte, Batte Michael. 2019. Montpellier : RTBfoods Project-CIRAD, 80 p.

The shade tree advice tool. van der Wolf Just, Gram Gil, Bukomeko Hannington, Mukasa David, Giller Onno, Kirabo Enoch, Angebault Charles, Vaast Philippe, Asare Richard, Jassogne Laurence. 2017. Rome : CGIAR, 4 p. (CCAFS Info Note)