I-GOST a phylogenomic tool for plant comparative genomics

Conte Matthieu, Rouard Mathieu, Droc Gaëtan, Perin Christophe. 2008. I-GOST a phylogenomic tool for plant comparative genomics. In : Abstracts of Plant and Animal Genomes XVIth Conference, San Diego, CA (USA), January 12-16, 2008. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 16, San Diego, États-Unis, 12 Janvier 2008/16 Janvier 2008.

Résumé : -GOST (Iterative GreenPhyl Orthologous Search Tool) is a fast and user friendly comparative genomic program using a phylogeny-based method to infer orthologs and paralogs in plants. This tools use precomputed phylogeny develops on Oryza sativa and Arabidopsis thaliana full genomes from GreenPhylDB (http://greenphyl.cirad.fr). I-GOST intends to provide a reliable tool for sequence annotation, gene functional analysis or candidate gene search for any plant genome. I-GOST improves time processing performance by using pre calculated phylogenetic analyses available for more than 4000 of validated families from GreenPhylDB database. I-GOST gives clear phylogenetic scores, ranked by bootstrap confidence from a list of plant genes. I-GOST is a publicly accessible tool available on-line (http://greenphyl.cines.fr/cgi-bin/i-gost.cgi). (Texte intégral)

Classification Agris : F30 - Génétique et amélioration des plantes

Auteurs et affiliations

• Conte Matthieu
• Rouard Mathieu, Bioversity International (ITA)
• Droc Gaëtan, CIRAD-BIOS-UMR DAP (FRA) ORCID: 0000-0003-1849-1269
• Perin Christophe, CIRAD-BIOS-UMR DAP (FRA) ORCID: 0000-0002-2469-310X

Source : Cirad - Agritrop (https://agritrop.cirad.fr/545534/)

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