The URGI plants and bio-agressors genomics annotation system

Brault Baptiste, Alaux Michael, Legeai Fabrice, Reboux Sébastien, Luyten Isabelle, Sidibé-Bocs Stéphanie, Steinbach Samson Delphine, Quesneville Hadi, Amselem Joelle. 2009. The URGI plants and bio-agressors genomics annotation system. In : 10ème Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM 2009), Nantes, France, 09-11 juin 2009. s.l. : s.n., 1 p. Journées politiques agricoles, Paris, France, 2 Mars 1993/3 Mars 1993.

Résumé : The URGI genomic annotation platform, developed in the framework of the GnpAnnot project, relies on well known GMOD tools (http://gmod.org): Apollo, Chado and GBrowse. Apollo is the graphical interface for visualization and annotation edition allowing curators to edit their genes according to evidences (transcript and protein similarity, comparative genomics). Manual annotations (gene curation validated/in progress) are saved in a dedicated Chado database and shared at the same time with other community annotations members. Validated genes/pseudogenes are then committed in the second Chado database accessible by GBrowse.

Classification Agris : F30 - Génétique et amélioration des plantes
C30 - Documentation et information
H10 - Ravageurs des plantes

Auteurs et affiliations

• Brault Baptiste, INRA (FRA)
• Alaux Michael, INRA (FRA)
• Legeai Fabrice, INRA (FRA)
• Reboux Sébastien, INRA (FRA)
• Luyten Isabelle, INRA (FRA)
• Sidibé-Bocs Stéphanie, CIRAD-BIOS-UMR DAP (FRA) ORCID: 0000-0001-7850-4426
• Steinbach Samson Delphine, INRA (FRA)
• Quesneville Hadi, INRA (FRA)
• Amselem Joelle, INRA (FRA)

Source : Cirad - Agritrop (https://agritrop.cirad.fr/552317/)

Métriques

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