An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea

Diener Julien, Nacry Philippe, Perin Christophe, Diévart Anne, Draye Xavier, Boudon Frédéric, Gaujon A., Godin Christophe. 2013. An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea. In : Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Vantaa : Finnish Society of Forest Science, 85-87. ISBN 978-951-651-408-9 International Conference on Functional-Structural Plant Models. 7, Saariselkä, Finlande, 9 Juin 2013/14 Juin 2013.

Résumé : FSPM analysis of root systems requires structural data obtained on large data set. This paper describes a processing pipeline developed to extract automatically the architecture of root system from images databases.

Classification Agris : U10 - Informatique, mathématiques et statistiques
F50 - Anatomie et morphologie des plantes
F62 - Physiologie végétale - Croissance et développement

Auteurs et affiliations

• Diener Julien, INRIA (FRA)
• Nacry Philippe, INRA (FRA)
• Perin Christophe, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0002-2469-310X
• Diévart Anne, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-9460-4638
• Draye Xavier, UCL (BEL)
• Boudon Frédéric, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-9636-3102
• Gaujon A., INRA (FRA)
• Godin Christophe, INRIA (FRA)

Source : Cirad - Agritrop (https://agritrop.cirad.fr/570143/)

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