Résultats pour : "Métagénomique"

Spatial scale influences the distribution of viral diversity in the eukaryotic virome of the mosquito Culex pipiens. Gil Patricia, Exbrayat Antoni, Loire Etienne, Rakotoarivony Ignace, Charriat Florian, Morel Come, Baldet Thierry, Boisseau Michel, Marie Albane, Francés Benoit, L'Ambert Grégory, Bessat Mohamed, Otify Yehia, Goffredo Maria, Mancini Giuseppe, Busquets Núria, Birnberg Lotty, Talavera Sandra, Aranda Carles, Ayari Emna, Mejri Selma, Sghaier Soufien, Bennouna Amal, El Rhaffouli Hicham, Balenghien Thomas, Chlyeh Ghita, Fassi Fihri Ouafaa, Reveillaud Julie, Simonin Yannick, Eloit Marc, Gutierrez Serafin. 2023. Virus Evolution, 9 (2):vead054, 14 p.

At least seven distinct rotavirus genotype constellations in bats with evidence of reassortment and zoonotic transmissions. Simsek Ceren, Corman Victor Max, Everling Hermann Ulrich, Lukashev Alexander N., Rasche Andrea, Maganga Gaël Darren, Binger Tabea, Jansen Daan, Beller Leen, Deboutte Ward, Gloza-Rausch Florian, Seebens-Hoyer Antje, Yordanov Stoian, Sylverken Augustina, Oppong Samuel, Adu Sarkodie Yaw, Vallo Peter, Leroy Eric M., Bourgarel Mathieu, Yinda Kwe Claude, Van Ranst Eric, Drosten Christian, Drexler Jan Felix, Matthijnssens Jelle. 2021. Mbio, 12 (1):e02755-20, 17 p.

Characterisation of the viral community associated with the Alfalfa Weevil (Hypera postica) and its host plant, Alfalfa (Medicago sativa). François Sarah, Antoine-Lorquin Aymeric, Kulikowski Maximilien, Frayssinet Marie, Filloux Denis, Fernandez Emmanuel, Roumagnac Philippe, Froissart Rémy, Ogliastro Mylène. 2021. Viruses, 13 (5):791, 17 p.

Nanopore sequencing is a credible alternative to recover complete genomes of geminiviruses. Ben Chehida Sélim, Filloux Denis, Fernandez Emmanuel, Moubset Oumaima, Hoareau Murielle, Julian Charlotte, Blondin Laurence, Lett Jean-Michel, Roumagnac Philippe, Lefeuvre Pierre. 2021. Microorganisms, 9:903, 15 p.

metaXplor: An interactive viral and microbial metagenomic data manager. Sempere Guilhem, Petel Adrien, Abbé Magsen, Lefeuvre Pierre, Roumagnac Philippe, Mahé Frédéric, Baurens Gaël, Filloux Denis. 2021. GigaScience, 10 (2):giab001 : 1-8.

Illuminating an ecological blackbox: Using high throughput sequencing to characterize the plant virome across scales. Maclot François, Candresse Thierry, Filloux Denis, Malmstrom Carolyn M., Roumagnac Philippe, van der Vlugt René, Massart Sébastien. 2020. Frontiers in Microbiology, 11:578064, 16 p.

Pour une production contrôlée d'agarwood d'Aquilaria crassna Pierre ex Lecomte en Guyane. Approches métagénomique, biochimique et histologique. Zaremski Clara. 2020. Kourou : Université de Guyane, 239 p. Thèse de doctorat : Biologie des organismes, biologies animales, végétales et microbiennes : Université de Guyane

Diverse and variable virus communities in wild plant populations revealed by metagenomic tools. Susi Hanna, Filloux Denis, Frilander Mikko J., Roumagnac Philippe, Laine Anna-Liisa. 2019. PeerJ, 7:e6140, 24 p.

Identification of Eilat virus and prevalence of infection among Culex pipiens L. populations, Morocco, 2016. Bennouna Amal, Gil Patricia, El Rhaffouli Hicham, Exbrayat Antoni, Loire Etienne, Balenghien Thomas, Chlyeh Ghita, Gutierrez Serafin, Fassi-Fihri Ouafaa. 2019. Virology, 530 : 85-88.

The Wolbachia mobilome in Culex pipiens includes a putative plasmid. Reveillaud Julie, Bordenstein Sarah R., Cruaud Corinne, Shaiber Alon, Esen Özcan C., Weill Mylène, Makoundou Patrick, Lolans Karen, Watson Andrea R., Rakotoarivony Ignace, Bordenstein Seth R., Eren A. Murat. 2019. Nature Communications, 10 (1):1051, 11 p.

First report and genomic sequence of a new alfalfa marafivirus from France. Nemchinov Lev G., François Sarah, Roumagnac Philippe, Mollov Dimitre S., Filloux Denis. 2018. Phytopathology, 108 (10S), p. S1.188 International Congress of Plant Pathology (ICPP2018). 11, Boston, États-Unis, 29 Juillet 2018/3 Août 2018.

Viral metagenomic-based screening of sugarcane from florida reveals occurrence of six sugarcane-infecting viruses and high prevalence of Sugarcane yellow leaf virus. Filloux Denis, Fernandez Emmanuel, Comstock Jack C., Mollov Dimitre S., Roumagnac Philippe, Rott Philippe. 2018. Plant Disease, 102 (11) : 2317-2323.

Le microbiote des plantes : un ménage à trois milliards ? Roumagnac Philippe. 2017. Montpellier : Université de Montpellier, 49 p. Habilitation à diriger des recherches : Université de Montpellier