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Effect of post-harvest management practices on the mycobiome and ochratoxin A contamination of differently processed Robusta coffees from Ivory Coast. Lopez Rodríguez Claudia, Strub Caroline, Chochois Vincent, Verheecke-Vaessen C., Durand Noël, Jourdan Christophe, Fontana Angélique, Guehi Tagro Simplice, Medina Angel, Schorr-Galindo Sabine. 2023. Postharvest Biology and Technology, 206:112573, 9 p.

Spatial scale influences the distribution of viral diversity in the eukaryotic virome of the mosquito Culex pipiens. Gil Patricia, Exbrayat Antoni, Loire Etienne, Rakotoarivony Ignace, Charriat Florian, Morel Come, Baldet Thierry, Boisseau Michel, Marie Albane, Francés Benoit, L'Ambert Grégory, Bessat Mohamed, Otify Yehia, Goffredo Maria, Mancini Giuseppe, Busquets Núria, Birnberg Lotty, Talavera Sandra, Aranda Carles, Ayari Emna, Mejri Selma, Sghaier Soufien, Bennouna Amal, El Rhaffouli Hicham, Balenghien Thomas, Chlyeh Ghita, Fassi Fihri Ouafaa, Reveillaud Julie, Simonin Yannick, Eloit Marc, Gutierrez Serafin. 2023. Virus Evolution, 9 (2):vead054, 14 p.

The compact genome of the sponge Oopsacas minuta (Hexactinellida) is lacking key metazoan core genes. Santini Sébastien, Schenkelaars Quentin, Jourda Cyril, Duchesne Marc, Belahbib Hassiba, Rocher Caroline, Selva Marjorie, Riesgo Ana, Vervoort Michel, Leys Sally P., Kodjabachian Laurent, Le Bivic André, Borchiellini Carole, Claverie Jean-Michel, Renard Emmanuelle. 2023. BMC Biology, 21:139, 21 p.

A library preparation optimized for metagenomics of RNA viruses. Gil Patricia, Dupuy Virginie, Koual Rachid, Exbrayat Antoni, Loire Etienne, Fall Assane Gueye, Gimonneau Geoffrey, Biteye Biram, Talla Seck Monar, Rakotoarivony Ignace, Marie Albane, Francés Benoit, Lambert Grégory, Reveillaud Julie, Balenghien Thomas, Garros Claire, Albina Emmanuel, Eloit Marc, Gutierrez Serafin. 2021. Molecular Ecology Resources, 21 (6) : 1788-1807.

metaXplor: An interactive viral and microbial metagenomic data manager. Sempere Guilhem, Petel Adrien, Abbé Magsen, Lefeuvre Pierre, Roumagnac Philippe, Mahé Frédéric, Baurens Gaël, Filloux Denis. 2021. GigaScience, 10 (2):giab001 : 1-8.

Optimize the plant microbiota to increase plant growth and health. Barret M., Dufour Philippe, Durand-Tardif Mylène, Mariadassou M., Mougel Christophe, Perez P., Roumagnac Philippe, Sanguin Hervé, Steinberg Christian, Szambien M.. 2019. Paris : GIS Biotechnologies Vertes, 12 p.

The Wolbachia mobilome in Culex pipiens includes a putative plasmid. Reveillaud Julie, Bordenstein Sarah R., Cruaud Corinne, Shaiber Alon, Esen Özcan C., Weill Mylène, Makoundou Patrick, Lolans Karen, Watson Andrea R., Rakotoarivony Ignace, Bordenstein Seth R., Eren A. Murat. 2019. Nature Communications, 10 (1):1051, 11 p.

Genomic characterization of sugarcane mild mosaic virus. Filloux Denis, Fernandez Emmanuel, Mollov Dimitre S., Julian Charlotte, Rott Philippe, Roumagnac Philippe, Daugrois Jean-Heinrich. 2018. In : Book of Abstracts XII ISSCT Pathology Workshop. Coimbatore : ISSCT, 26-27. ISSCT Pathology Workshop. 12, Coimbatore, Inde, 3 Septembre 2018/7 Septembre 2018.

A library preparation optimized for RNA virus metagenomics allows sensitive detection of an arbovirus in wild-caught vectors. P14. Gil Patricia, Dupuy Virginie, Koual Rachid, Gueye Fall Assane, Biteye Biram, Gimonneau Geoffrey, Marie Albane, Francés Benoit, Lambert Grégory, Rakotoarivony Ignace, Gardes Laëtitia, Balenghien Thomas, Garros Claire, Gutierrez Serafin. 2018. In : Book of abstract Pathobiome 2018. INRA. Ajaccio : INRA, Résumé, 40-41. Pathobiome, Ajaccio, France, 18 Mars 2018/20 Mars 2018.

First detection of a Mesonivirus in Culex pipens in five countries around the Mediterranean basin. Gil Patricia, Rakotoarivony Ignace, Loire Etienne, Marie Albane, Francés Benoit, L'Ambert Grégory, Busquets-Martí Núria, Birnberg Lotty, Talavera Sandra, Carlos Aranda, Bessat Mohamed, Otify Yehia, Mansini Giuseppe, Goffredo Maria, Ayari Emna, Mejri Selma, Muth Erika, Cheval Justine, De Visser Louise, Lamany Arnaud, Cabannes Eric, Hebert Charles, Eloit Marc, Gutierrez Serafin. 2017. In : Abstract book of the 11th Epizone Annual Meeting welcome in Paris. ANSES. Paris : ANSES, Résumé, 27. Annual Meeting EPIZONE: Crossing barriers. 11, Paris, France, 19 Septembre 2017/21 Septembre 2017.

Functional genes of microorganisms, comprehending the dynamics of agricultural ecosystems. Reali Catiusca, Pilz Júnior Harry Luiz, Meile Jean-Christophe, Shorr Galindo Sabine, Fiuza Lidia Mariana. 2017. Brazilian Archives of Biology and Technology, 60:e17160370, 18 p.

Spatial metagenomics illuminate the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. Roumagnac Philippe, Bernardo Pauline, Charles-Dominique Tristan, Fernandez Emmanuel, Filloux Denis, Ortet Philippe, Barakat Mohamed, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn M., Martin Darren Patrick. 2017. . Paris : INRA, 93. International Conference on Holobionts, Paris, France, 19 Avril 2017/21 Avril 2017.

Virome characterization of Culex pipiens in France through metagenomic analysis: a new virus discovered. P3. Gil Patricia, Rakotoarivony Ignace, L'Ambert Grégory, Marie Albane, Francés Benoit, Loire Etienne, Koual Rachid, Gutiérrez Serafin, Albina Emmanuel. 2016. In : Programme and abstracts EPIZONE Going Viral. EPIZONE, INIA. Madrid : EPIZONE, 92. Annual Meeting EPIZONE Going Viral. 10, Madrid, Espagne, 27 Septembre 2016/29 Septembre 2016.

Detection of Orientia sp. DNA in rodents from Asia, West Africa and Europe. Cosson Jean François, Galan Maxime, Bard Emilie, Razzauti Maria, Bernard Maria, Morand Serge, Brouat Carine, Dalecky Ambroise, Bâ Khalilou, Charbonnel Nathalie, Vayssier-Taussat Muriel. 2015. Parasites and Vectors, 8:172, 4 p.

Visacane: An innovative quarantine tool for the exchange of pest and disease-free sugarcane germplasm. Guinet-Brial Isabelle, Girard Jean-Claude, Roumagnac Philippe, Daugrois Jean-Heinrich, Fernandez Emmanuel, Rott Philippe. 2015. International Sugar Journal : 890-896.