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Genetic diversity, evolution, and diagnosis of sugarcane yellow leaf virus from 19 sugarcane-producing locations worldwide. Rott Philippe, Grinstead Samuel, Dallot Sylvie, Foster Zachary S. L., Daugrois Jean-Heinrich, Fernandez Emmanuel, Kaye Claudia, Hendrickson Leticia, Hu Xiaojun, Adhikari Bishwo, Malapi Martha, Grunwald Niklaus J., Roumagnac Philippe, Mollov Dimitre S.. 2023. Plant Disease, 10711 : 3437-3447.

Metagenomics reveals the structure of Mastrevirus-host interaction network within an agro-ecosystem. Claverie Sohini, Hoareau Marie Murielle, Ben Chehida Sélim, Filloux Denis, Varsani Arvind, Roumagnac Philippe, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2023. Virus Evolution, 9 (2):vead043, 15 p.

Genetic diversity and structure of Bipolaris oryzae and Exserohilum rostratum populations causing brown spot of rice in Burkina Faso based on genotyping-by-sequencing. Kabore Kouka Hilaire, Kassankogno Abalo Itolou, Adreit Henri, Milazzo Joëlle, Guillou Sonia, Blondin Laurence, Chopin Laurie, Ravel Sébastien, Charriat Florian, Barro Mariam, Tollenaere Charlotte, Lebrun Marc-Henri, Tharreau Didier. 2022. Frontiers in Plant Science, 13:1022348, 15 p.

Manipulation of meiotic recombination to hasten crop improvement. Fayos Ian, Frouin Julien, Meynard Donaldo, Vernet Aurore, Herbert Leo, Guiderdoni Emmanuel. 2022. Biology, 11 (3), n.spéc. Crop Improvement Now and Beyond:369, 15 p.

Molecular determinants of the selective advantage of an invasive recombinant begomovirus in tomato plants carrying a Ty-1 resistance gene. Jammes Margaux, Golyaev Victor, Plissonneau Clémence, Urbino Cica, Peterschmitt Michel, Pooggin Mikhail. 2022. . SFV. Sète : SFV, Résumé, 1 p. International Symposium on ssDNA Viruses, Sète, France, 26 Septembre 2022/1 Octobre 2022.

Genetic diversity of Rice stripe necrosis virus and new insights into evolution of the genus Benyvirus. Bagayoko Issiaka, Celli Marcos Giovanni, Romay Gustavo, Poulicard Nils, Pinel-Galzi Agnès, Julian Charlotte, Filloux Denis, Roumagnac Philippe, Sérémé Drissa, Bragard Claude, Hebrard Eugénie. 2021. Viruses, 13:737, 12 p.

Identification of the begomoviruses squash leaf curl virus and watermelon chlorotic stunt virus in various plant samples in North America. Fontenele Rafaela S, Bhaskara Amulya, Cobb Ilaria N., Majure Lucas C., Salywon Andrew M., Avalos-Calleros Jesús, Argüello‐Astorga Gerardo R., Schmidlin Kara, Roumagnac Philippe, Ribeiro Simone G., Kraberger Simona, Martin Darren Patrick, Lefeuvre Pierre, Varsani Arvind. 2021. Viruses, 13 (5):810, 17 p.

New world cactaceae plants harbor diverse geminiviruses. Fontenele Rafaela S, Salywon Andrew M., Majure Lucas C., Cobb Ilaria N., Bhaskara Amulya, Avalos‐Callero Jesús A., Argüello‐Astorga Gerardo R., Schmidlin Kara, Khalifeh Anthony, Smith Kendal, Schreck Joshua, Lund Michael, Köhler Matias, Wojciechowski Martin, Hodgson Wendy C., Puente‐Martinez Raul, Van Doorslaer Koenraad, Kumari Safaa G., Oyeniran Kehinde A., Vernière Christian, Filloux Denis, Roumagnac Philippe, Lefeuvre Pierre, Ribeiro Simone G., Kraberger Simona, Martin Darren Patrick, Varsani Arvind. 2021. Viruses, 13 (4):694, 27 p.

Assessment of the roles of SPO11-2 and SPO11-4 in meiosis in rice using CRISPR/Cas9 mutagenesis. Fayos Ian, Meunier Anne Cecile, Vernet Aurore, Navarro Sanz Sergi, Portefaix Murielle, Lartaud Marc, Bastianelli Giacomo, Périn Christophe, Nicolas Alain, Guiderdoni Emmanuel. 2020. Journal of Experimental Botany, 71 (22) : 7046-7058.

Chromosome reciprocal translocations have accompanied subspecies evolution in bananas. Martin Guillaume, Baurens Franc-Christophe, Hervouet Catherine, Salmon Frédéric, Delos Jean-Marie Eric, Labadie Karine, Perdereau Aude, Mournet Pierre, Blois Louis, Dupouy Marion, Carreel Françoise, Ricci Sebastien, Lemainque Arnaud, Yahiaoui Nabila, D'Hont Angélique. 2020. Plant Journal, 104 : 1698-1711.

Engineering meiotic recombination pathways in rice. Fayos Ian, Mieulet Delphine, Petit Julie, Meunier Anne Cecile, Périn Christophe, Nicolas Alain, Guiderdoni Emmanuel. 2019. Plant Biotechnology Journal, 17 (11) : 2062-2077.

Genomic diversity and recombination among Xylella fastidiosa subspecies. Vanhove Mathieu, Retchless Adam C., Sicard Anne, Rieux Adrien, Coletta-Filho Helvécio D, De La Fuente Leonardo, Stenger Drake C., Almeida Rodrigo P.P.. 2019. Applied and Environmental Microbiology, 85 (13):e02972-18, 17 p.

Agroecological and evolutionary factors driving the success emergence of a non-canonical tomato yellow leaf curl virus recombinant. Belabess Zineb, Peterschmitt Michel, Granier Martine, Tahiri Abdessalem, Blenzar Abdelali, Urbino Cica. 2016. In : Actes du Printemps de Baillarguet. 8ème édition. Berthelot Edwige (ed.), Diagne Christophe (ed.), Hammami Pachka (ed.), Lesieur Vincent (ed.), Lies Adrien (ed.), Rombaut Antoine (ed.). INRA, EBCL, Ecole Doctorale GAIA, CeMEB, CIRAD, IRD, Montpellier SupAgro. Montferrier : INRA-CIRAD, Résumé, 36-37. Printemps de Baillarguet. 8, Montferrier-sur-Lez, France, 2 Juin 2016/3 Juin 2016.

Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar. De Bruyn Alexandre, Harimalala Mireille Aurélie, Zinga Innocent, Mabvakure Batsirai, Hoareau Murielle, Ravigné Virginie, Walters Matthew, Reynaud Bernard, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2016. BMC Evolutionary Biology, 16 (182), 21 p.

Recombination is a major driving force of genetic diversity in the Anaplasmataceae Ehrlichia ruminantium. Cangi Nidia, Gordon Jonathan, Bournez Laure, Pinarello Valérie, Aprelon Rosalie, Huber Karine, Lefrançois Thierry, Neves Luis, Meyer Damien, Vachiery Nathalie. 2016. Frontiers in Cellular and Infection Microbiology, 6:111, 14 p.