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A ribodepletion and tagging protocol to multiplex samples for RNAsseq based virus detection: Application to the cassava virome. Otron Daniel, Pita Justin S., Hoareau Marie Murielle, Tiendrebeogo Fidèle, Lett Jean-Michel, Lefeuvre Pierre. 2025. Virology Journal, 22:7, 10

Benchmarking of virome metagenomic analysis approaches using a large, 60+ members, viral synthetic community. Schönegger Deborah, Moubset Oumaima, Margaria Paolo, Menzel Wulf, Winter Stephan, Roumagnac Philippe, Marais Armelle, Candresse Thierry. 2023. Journal of Virology, 97 (11), 20 p.

Long-term anthropogenic management and associated loss of plant diversity deeply impact virome richness and composition of Poaceae communities. Maclot François, Debue Virginie, Malmstrom Carolyn M., Filloux Denis, Roumagnac Philippe, Eck Mathilde, Tamisier Lucie, Blouin Arnaud G., Candresse Thierry, Massart Sébastien. 2023. Microbiology Spectrum, 11 (2), 17 p.

Spatial scale influences the distribution of viral diversity in the eukaryotic virome of the mosquito Culex pipiens. Gil Patricia, Exbrayat Antoni, Loire Etienne, Rakotoarivony Ignace, Charriat Florian, Morel Come, Baldet Thierry, Boisseau Michel, Marie Albane, Francés Benoit, L'Ambert Grégory, Bessat Mohamed, Otify Yehia, Goffredo Maria, Mancini Giuseppe, Busquets Núria, Birnberg Lotty, Talavera Sandra, Aranda Carles, Ayari Emna, Mejri Selma, Sghaier Soufien, Bennouna Amal, El Rhaffouli Hicham, Balenghien Thomas, Chlyeh Ghita, Fassi Fihri Ouafaa, Reveillaud Julie, Simonin Yannick, Eloit Marc, Gutiérrez Serafin. 2023. Virus Evolution, 9 (2):vead054, 14 p.

Bidirectional interactions between arboviruses and the bacterial and viral microbiota in Aedes aegypti and Culex quinquefasciatus. Shi Chenyan, Beller Leen, Wang Lanjiao, Rosales Rosas Ana, De Coninck Lander, Héry Lyza, Mousson Laurence, Pagès Nonito, Raes Jeroen, Delang Leen, Vega-Rúa Anubis, Failloux Anna-Bella, Matthijnssens Jelle. 2022. Mbio, 13 (5), 18 p.

Exploring the emergence and evolution of plant pathogenic microbes using historical and paleontological sources. Malmstrom Carolyn M., Martin Michael, Gagnevin Lionel. 2022. Annual Review of Phytopathology, 60 (1) : 187-209.

Virome and nrEVEome diversity of Aedes albopictus mosquitoes from La Reunion Island and China. Palatini Umberto, Alfano Niccolo, Lejarazu Carballar Rebeca, Chen Xiao-Guang, Delatte Hélène, Bonizzoni Mariangela. 2022. Virology Journal, 19:190, 12 p.

A library preparation optimized for metagenomics of RNA viruses. Gil Patricia, Dupuy Virginie, Koual Rachid, Exbrayat Antoni, Loire Etienne, Fall Assane Gueye, Gimonneau Geoffrey, Biteye Biram, Talla Seck Monar, Rakotoarivony Ignace, Marie Albane, Francés Benoit, Lambert Grégory, Reveillaud Julie, Balenghien Thomas, Garros Claire, Albina Emmanuel, Eloit Marc, Gutiérrez Serafin. 2021. Molecular Ecology Resources, 21 (6) : 1788-1807.

High-throughput sequencing for deciphering the virome of alfalfa (Medicago sativa L.). Bejerman Nicolás, Roumagnac Philippe, Nemchinov Lev G.. 2020. Frontiers in Microbiology, 11:553109, 17 p.

Écologie du virome d'arthropodes vecteurs d'arbovirus. Gutiérrez Serafin. 2020. Montpellier : Université de Montpellier, 53 p. Habilitation à diriger des recherches : Université de Montpellier

Monitoring silent spillovers before emergence: A pilot study at the tick/human interface in Thailand. Temmam Sarah, Chrétien Delphine, Bigot Thomas, Dufour Evelyne, Petres Stéphane, Desquesnes Marc, Devillers Elodie, Dumarest Marine, Yousfi Léna, Jittapalapong Sathaporn, Karnchanabanthoeng Anamika, Chaisiri Kittipong, Gagnieur Léa, Cosson Jean François, Vayssier-Taussat Muriel, Morand Serge, Moutailler Sara, Eloit Marc. 2019. Frontiers in Microbiology, 10:2315, 18 p.

First detection of a Mesonivirus in Culex pipens in five countries around the Mediterranean basin. Gil Patricia, Rakotoarivony Ignace, Loire Etienne, Marie Albane, Francés Benoit, L'Ambert Grégory, Busquets-Martí Núria, Birnberg Lotty, Talavera Sandra, Carlos Aranda, Bessat Mohamed, Otify Yehia, Mansini Giuseppe, Goffredo Maria, Ayari Emna, Mejri Selma, Muth Erika, Cheval Justine, De Visser Louise, Lamany Arnaud, Cabannes Eric, Hebert Charles, Eloit Marc, Gutiérrez Serafin. 2017. In : Abstract book of the 11th Epizone Annual Meeting welcome in Paris. ANSES. Paris : ANSES, Résumé, 27. Annual Meeting EPIZONE: Crossing barriers. 11, Paris, France, 19 Septembre 2017/21 Septembre 2017.

Virome characterization of Culex pipiens in France through metagenomic analysis: a new virus discovered. P3. Gil Patricia, Rakotoarivony Ignace, L'Ambert Grégory, Marie Albane, Francés Benoit, Loire Etienne, Koual Rachid, Gutiérrez Serafin, Albina Emmanuel. 2016. In : Programme and abstracts EPIZONE Going Viral. EPIZONE, INIA. Madrid : EPIZONE, 92. Annual Meeting EPIZONE Going Viral. 10, Madrid, Espagne, 27 Septembre 2016/29 Septembre 2016.