Towards a bioinformatics platform for the Musa research community : [Abstract W076]

Rouard Mathieu, Argout Xavier, Bocs Stéphanie, Conte Matthieu, Droc Gaëtan, Guignon Valentin, Hamelin Chantal, Roux Nicolas, Ruiz Manuel. 2010. Towards a bioinformatics platform for the Musa research community : [Abstract W076]. In : Abstracts of Plant and Animal Genomes XVIIIth Conference, San Diego, CA (USA), January 09-13, 2010. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 18, San Diego, États-Unis, 9 Janvier 2010/13 Janvier 2010.

Résumé : Current experiments in genomics produce a large amount of data that needs to be organized into databases and broadly accessible. Like other species, the Musa genomics community would benefit from centralized and innovative ways to study its genome. Over the past years, genetic and genomic data (e.g. BAC, EST, Markers) have been generated and stored in databases. Several pipelines of analyses were implemented for gene, transposable element, and expression data analyses, and for comparative genomics such as ortholog predictions via a phylogenomic approach (GreenPhyl). Web tools have been developed or implemented to facilitate access to data, such as genetic makers (TropGeneDB), genetic maps (CMap), a physical Map (GBrowse), and Expressed sequence Tags (ESTtik) gene/TE predictions, and to allow online manual genome annotation (GnpAnnot). The number of tools may continue to grow, in particular with the near release of the Musa genome sequence, and the increase of Next-Generation Sequencing (NGS) facilities. The GMGC website (http://www.musagenomics.org) is a place where data can be shared, and where databases and tools can be listed in an homogeneous way to serve the Musa genomics community. It is intended to provide the researchers interested in Musa with a common set of resources in order to work more efficiently and effectively. (Texte intégral)

Classification Agris : F30 - Génétique et amélioration des plantes
C30 - Documentation et information

Auteurs et affiliations

• Rouard Mathieu, Bioversity International (FRA)
• Argout Xavier, CIRAD-BIOS-UMR DAP (FRA) ORCID: 0000-0002-0100-5511
• Bocs Stéphanie ORCID: 0000-0001-7850-4426
• Conte Matthieu, Bioversity International (FRA)
• Droc Gaëtan, CIRAD-BIOS-UMR DAP (FRA) ORCID: 0000-0003-1849-1269
• Guignon Valentin
• Hamelin Chantal, CIRAD-BIOS-UMR DAP (FRA)
• Roux Nicolas, Bioversity International (FRA)
• Ruiz Manuel, CIRAD-BIOS-UMR DAP (FRA) ORCID: 0000-0001-8153-276X

Source : Cirad - Agritrop (https://agritrop.cirad.fr/555729/)

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