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Number of items: 29.

Journal article

Improvements in virus detection at CIRAD's sugarcane quarantine using both viral metagenomics and PCR-Based approaches. Fernandez Emmanuel, Ferdinand Romain, Filloux Denis, Guinet Isabelle, Julian Charlotte, Rott Philippe, Roumagnac Philippe, Daugrois Jean-Heinrich. 2020. Sugar Tech, 22 : pp. 498-503.
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Yam asymptomatic virus 1, a novel virus infecting yams (Dioscorea spp.) with significant prevalence in a germplasm collection. Marais Armelle, Umber Marie, Filloux Denis, Gomez Rose-Marie, Faure Chantal, Pavis Claudie, Julian Charlotte, Roumagnac Philippe, Acina Manbole Isabelle Nina, Bonheur Lydiane, Theil Sébastien, Contreras Sandy, Candresse Thierry, Teycheney Pierre-Yves. 2020. Archives of Virology, 5 p.
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Emergence of southern rice black-streaked dwarf virus in the centuries-old Chinese Yuanyang agrosystem of rice landraces. Alonso Pascal, Gladieux Pierre, Moubset Oumaima, Shih Pei-Jung, Mournet Pierre, Frouin Julien, Blondin Laurence, Ferdinand Romain, Fernandez Emmanuel, Julian Charlotte, Filloux Denis, Adreit Henri, Fournier Elisabeth, Ducasse Aurélie, Grosbois Vladimir, Morel Jean-Benoit, Huang Huichuan, Jin Baihui, He Xiahong, Martin Darren Patrick, Vernière Christian, Roumagnac Philippe. 2019. Viruses, 11 (11):985, 13 p.
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The westward journey of alfalfa leaf curl virus. Davoodi Zohreh, Bejerman Nicolás, Richet Cécile, Filloux Denis, Kumari Safaa G., Chatzivassiliou Elisavet K., Galzi Serge, Julian Charlotte, Samarfard Samira, Trucco Verónica, Giolitti Fabián, Fiallo-Olivé Elvira, Navas-Castillo Jesús, Asaad Nader, Rahman Moukahel Abdul, Hijazi Jomana, Mghandef Samia, Heydarnejad Jahangir, Massumi Hossein, Varsani Arvind, Dietzgen Ralf G., Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2018. Viruses, 10 (10):542, 16 p.
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Two novel Alphaflexiviridae members revealed by deep sequencing of the Vanilla (Orchidaceae) virome. Grisoni Michel, Marais Armelle, Filloux Denis, Saison Anne, Faure Chantal, Julian Charlotte, Theil Sébastien, Contreras Sandy, Teycheney Pierre-Yves, Roumagnac Philippe, Candresse Thierry. 2017. Archives of Virology, 162 (12) : pp. 3855-3861.
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Alfalfa leaf curl virus: an aphid-transmitted geminivirus. Roumagnac Philippe, Granier Martine, Bernardo Pauline, Deshoux Maëlle, Ferdinand Romain, Galzi Serge, Fernandez Emmanuel, Julian Charlotte, Abt Isabelle, Filloux Denis, Mesleard François, Varsani Arvind, Blanc Stéphane, Martin Darren Patrick, Peterschmitt Michel. 2015. Journal of Virology, 89 (18) : pp. 9683-9688.
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The genomes of many yam species contain transcriptionally active endogenous geminiviral sequences that may be functionally expressed. Filloux Denis, Murrell Sasha, Koohapitagtam M., Golden Michael, Julian Charlotte, Galzi Serge, Uzest Marilyne, Rodier-Goud Marguerite, D'Hont Angélique, Vernerey Marie-Stéphanie, Wilkin P., Peterschmitt Michel, Winter Stephan, Murrell Ben, Martin Darren Patrick, Roumagnac Philippe. 2015. Virus Evolution, 1 (1), 17 p.
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Appearances can be deceptive: Revealing a hidden viral infection with deep sequencing in a plant quarantine Context. Candresse Thierry, Filloux Denis, Muhire Brejnev, Julian Charlotte, Galzi Serge, Fort Guillaume, Bernardo Pauline, Daugrois Jean-Heinrich, Fernandez Emmanuel, Martin Darren Patrick, Varsani Arvind, Roumagnac Philippe. 2014. PloS One, 9 (7):e102945, 13 p.
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Paper with proceedings

Improvements in virus detection at CIRAD's sugarcane quarantine using both viral metagenomics and PCR-based approaches. Fernandez Emmanuel, Ferdinand Romain, Filloux Denis, Guinet Isabelle, Julian Charlotte, Rott Philippe, Roumagnac Philippe, Daugrois Jean-Heinrich. 2019. In : Proceedings of the XXX International Society of Sugar Cane Technologists Congress. ISSCT. Tucuman : ISSCT, pp. 345-351. ISBN 978-616-92761-0-4 ISSCT Congress. 30, Tucuman, Argentine, 2 September 2019/5 September 2019.
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Genomic characterization of sugarcane mild mosaic virus. Filloux Denis, Fernandez Emmanuel, Mollov Dimitre S., Julian Charlotte, Rott Philippe, Roumagnac Philippe, Daugrois Jean-Heinrich. 2018. In : Book of Abstracts XII ISSCT Pathology Workshop. Coimbatore : ISSCT, pp. 26-27. ISSCT Pathology Workshop. 12, Coimbatore, Inde, 3 September 2018/7 September 2018.
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Identification of two SCYLV recombinants between different genotypes in the germplasm collection of Guadeloupe. Fernandez Emmanuel, Filloux Denis, Julian Charlotte, Roumagnac Philippe, Daugrois Jean-Heinrich. 2018. In : Book of Abstracts XII ISSCT Pathology Workshop. Coimbatore : ISSCT, p. 28. ISSCT Pathology Workshop. 12, Coimbatore, Inde, 3 September 2018/7 September 2018.
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Visacane sugarcane quarantine and its partner networks. Fernandez Emmanuel, Thong-Chane Audrey, Barau Laurent, Filloux Denis, Guinet-Brial Isabelle, Mollow Dimitre, Julian Charlotte, Ferdinand Romain, Roumagnac Philippe, Daugrois Jean-Heinrich. 2018. In : Sugar Crops Improvement, Biotechnology, Bio-refinery and Diversification: Impacts on Bio-based Economy. Thailand Society of Sugar Technologists. Udon Thani : Thailand Society of Sugar Technologists, 4 p. IAPSIT International Sugar Conference. 6, Udon Thani, Thaïlande, 6 March 2018/9 March 2018.
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Visacane sugarcane quarantine and its partner networks. Fernandez Emmanuel, Thong-Chane Audrey, Barau Laurent, Filloux Denis, Guinet-Brial Isabelle, Mollow Dimitre, Julian Charlotte, Ferdinand Romain, Roumagnac Philippe, Daugrois Jean-Heinrich. 2018. In : Sugar crops improvement, biotechnology, Bio-refinery and diversification: Impacts on bio-based economy: 6th IAPSIT International Sugar Conference. Souvenir de presentation IS-2018. Rao G.P. (ed;), Solomon S. (ed.), Li Yang-Rui (ed.), Swapna M. (ed.), Sinh Priyanka (ed.), Tiwari Ajay (ed.), Vanichsriratana Wirat (ed.), Uraichuen Sopon (ed.). TSSCT, Kasetsart University, IAPSIT. Udon Thani : TSSCT-IAPSIT, Résumé, p. 52. IAPSIT International Sugar Conference. 6, Udon Thani, Thaïlande, 6 March 2018/9 March 2018.
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Metagenomics-based exploration of the genetic diversity of SCYLV in the sugarcane collection of Guadeloupe. Fernandez Emmanuel, Filloux Denis, Julian Charlotte, Lubin Adjanoh Nadia, Teycheney Pierre-Yves, Candresse Thierry, Roumagnac Philippe, Daugrois Jean-Heinrich. 2016. In : Building bridges between disciplines for sustainable management of plant virus diseases. INRA, Université d'Avignon. Avignon : INRA, Résumé, p. 83. International Plant Virus Epidemiology Symposium. 13, Avignon, France, 6 June 2016/10 June 2016.
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Impact of NGS-based diagnosis on sugarcane quarantine processes. Daugrois Jean-Heinrich, Darroussat Marie-Josée, Fenouillet Catherine, Ferdinand Romain, Fernandez Emmanuel, Filloux Denis, Galzi Serge, Guinet-Brial Isabelle, Julian Charlotte, Lubin Nadia, Roques Danièle, Roumagnac Philippe. 2015. In : Book of abstracts. XI Pathology and IX Entomology ISSCT joint Workshop. FIADE. Guayaquil : FIADE, Résumé, p. 17. ISSCT Pathology Workshop. 11, Guayaquil, Équateur, 14 September 2015/18 September 2015.
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Poster

Another night at the museum: searching for traces of plant viruses using the virion-associated nucleic acid metagenomics approach. [P.21]. Julian Charlotte, Filloux Denis, Rieux Adrien, Lefeuvre Pierre, Lett Jean-Michel, Becker Nathalie, Gagnevin Lionel, Trinder-Smith Terry H., Hartnady Penelope, Martin Darren Patrick, Roumagnac Philippe. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 80. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Assessment of the viral disease threats on sorghum and phenotyping support on diseases. [P.29]. Bangratz Martine, Tibiri Ezechiel Bionimian, Julian Charlotte, Filloux Denis, Pinel-Galzi Agnès, Brugidou Christophe, Roumagnac Philippe, Tiendrebeogo Fidèle, Hébrard Eugénie. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 88. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Global geographical distribution of capulaviruses. [P.42]. Galzi Serge, Filloux Denis, Richet Cécile, Julian Charlotte, Ferdinand Romain, Davoodi Zohreh, Bejerman Nicolás, Kumari Safaa G., Chatzivassiliou Elisavet K., Fiallo-Olivé Elvira, Navas-Castillo Jesús, Susi Hanna, Laine Anna-Liisa, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Roumagnac Philippe. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 101. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Exploring within-host diversity of plant viruses in rice agrosystems using two high-throughput sequencing strategies. Poulicard Nils, Dereeper Alexis, Pinel-Galzi Agnès, Fernandez Emmanuel, Julian Charlotte, Hubert Judith, Filloux Denis, Fargette Denis, Roumagnac Philippe, Hébrard Eugénie. 2018. In : Book of abstract of the International Phytobiomes Conference 2018. International Phytobiomes Alliance, INRA, IRD. Montpellier : International Phytobiomes Alliance-INRA, p. 68. International phytobiomes conference. 2, Montpellier, France, 4 December 2018/6 December 2018.
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Metagenomics-based discovery and molecular characterization of novel geminiviruses from two Mediterranean-climate biodiversity hotspots. [P57]. Galzi Serge, Bernardo Pauline, Fernandez Emmanuel, Julian Charlotte, Ferdinand Romain, Harkins Gordon William, Peterschmitt Michel, Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 118. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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Sugarcane mild mosaic virus: towards the full characterization of this sugarcane Ampelovirus re-discovered using metagenomics-based approaches. [P03]. Daugrois Jean-Heinrich, Candresse Thierry, Fernandez Emmanuel, Filloux Denis, Julian Charlotte, Teycheney Pierre-Yves, Mollov Dimitre S., Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 64. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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Using preserved herbarium specimens to analyse past viral diversity: preliminary methodological results. [P53]. Julian Charlotte, Fernandez Emmanuel, Lefeuvre Pierre, Lett Jean-Michel, Bernardo Pauline, Malmstrom Carolyn M., Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, p. 114. Rencontres de virologie végétale, Aussois, France, 15 January 2017/19 January 2017.
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Metagenomic discovery, worldwide distribution and genetic diversity of novel macluraviruses infecting yams (Dioscorea spp.). [P.28]. Filloux Denis, Bonheur Lydiane, Umber Marie, Pavis Claudie, Fernandez Emmanuel, Galzi Serge, Julian Charlotte, Daugrois Jean-Heinrich, Sukal Amit, Winter Stephan, Teycheney Pierre-Yves, Candresse Thierry, Roumagnac Philippe. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, p. 86. Rencontres de virologie végétale. 15, Aussois, France, 18 January 2015/22 January 2015.
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Paper without proceedings

Exploring within-host diversity of plant viruses in rice agrosystems using two high-throughput sequencing strategies. Poulicard Nils, Dereeper Alexis, Pinel-Galzi Agnès, Fernandez Emmanuel, Julian Charlotte, Hubert Judith, Filloux Denis, Fargette Denis, Roumagnac Philippe, Hébrard Eugénie. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, p. 34. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 January 2019/31 January 2019.
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Geographical distribution and diversity of Plantago Lanceolata latent virus, a member of the Capulavirus genus. Filloux Denis, Galzi Serge, Julian Charlotte, Ryckebusch Faustine, Granier Martine, Peterschmitt Michel, Davoodi Zohreh, Susi Hanna, Laine Anna-Liisa, Roumagnac Philippe. 2019. In : Programme and abstracts of the 9th International Germinivirus Symposium (IGS 2019) and the 7th ssDNA Comparative virology workshop. University of California. Davis : University of California, Résumé, p. 71. International Geminivirus Symposium. 9, Davis, États-Unis, 9 November 2019/13 November 2019.
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Étude de la diversité des virus des plantes conservés dans les herbiers. Delattre R., Julian Charlotte, Fernandez Emmanuel, Filloux Denis, Roumagnac Philippe. 2018. In : Actes de conférences : Le printemps de Baillarguet. CIRAD. Montpellier : CIRAD, Résumé, p. 12. Le printemps de Baillarguet 2018. 10, Montpellier, 28 May 2018/29 May 2018.
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Viral treasure hunt in European outermost territories: how metagenomics boosts the discovery of novel viral species in tropical and sub-tropical crops germplasm. [O.18]. Teycheney Pierre-Yves, Bandou Eric, Gomez Rose-Marie, Lange David, Pavis Claudie, Umber Marie, Acina Manbole Isabelle Nina, Bonheur Lydiane, Daugrois Jean-Heinrich, Fernandez Emmanuel, Filloux Denis, Julian Charlotte, Roumagnac Philippe, Grisoni Michel, Pierret Alycia, Rubington Margot, Candresse Thierry, Contreras Sandy, Faure Chantal, Marais Armelle, Theil Sébastien, Da Câmara Machado Artur, Mendonça Duarte, Pinheiro de Carvalho Miguel A.A., Silva Emanuel. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, p. 30. Rencontres de virologie végétale. 15, Aussois, France, 18 January 2015/22 January 2015.
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Characterization of new endogenous geminiviral elements in yam (Dioscorea spp.) genomes. Filloux Denis, Koohapitagtam M., Golden Michael, Julian Charlotte, Galzi Serge, Rodier-Goud Marguerite, D'Hont Angélique, Vernerey Marie-Stéphanie, Wilkin P., Peterschmitt Michel, Martin Darren Patrick, Roumagnac Philippe. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, p. 5. Rencontres de Virologie Végétale. 14, Aussois, France, 13 January 2013/17 January 2013.
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Improvement of three nucleic acid isolation protocols for an overall diagnosis of viruses on six vegetative propagated plants. Julian Charlotte, Bernardo Pauline, Fernandez Emmanuel, Galzi Serge, Grisoni Michel, Da Silva Mendoça D.M., Pavis Claudie, Roumagnac Philippe, Filloux Denis. 2013. In : 14èmes Rencontres de virologie végétale (RVV 2013) : Aussois, France, 13-17 janvier 2013. Marais Armelle (ed.), Revers Frédéric (ed.). SFP, INRA. Paris : SFP, Résumé, p. 75. Rencontres de Virologie Végétale. 14, Aussois, France, 13 January 2013/17 January 2013.
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This list was generated on Sun Sep 27 10:14:17 2020 CEST.