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African army ants at the forefront of virome surveillance in a remote tropical forest. Fritz Matthieu, Reggiardo Bérénice, Filloux Denis, Claude Lisa, Fernandez Emmanuel, Mahe Frédéric, Kraberger Simona, Custer Joy M., Becquart Pierre, Mebaley Telsta Ndong, Kombila Linda Bohou, Lenguiya Léadisaelle H., Boundenga Larson, Mombo Illich M., Maganga Gaël Darren, Niama Fabien R., Koumba Jean-Sylvain, Ogliastro Mylène, Yvon Michel, Martin Darren Patrick, Blanc Stéphane, Varsani Arvind, Leroy Eric M., Roumagnac Philippe. 2023. Peer Community Journal, 3:e24, 21 p.

Once upon a time, the VANA story based on the review "virion-associated nucleic acid-based metagenomics : a decade of advances in molecular characterization of plant viruses". Moubset Oumaima, François Sarah, Maclot François, Palanga Essowé, Julian Charlotte, Claude Lisa, Fernandez Emmanuel, Rott Philippe, Daugrois Jean-Heinrich, Antoine-Lorquin Aymeric, Bernardo Pauline, Blouin Arnaud G., Temple Coline, Kraberger Simona, Fontenele Rafaela S, Harkins Gordon William, Ma Yuxin, Marais Armelle, Candresse Thierry, Ben Chehida Sélim, Lefeuvre Pierre, Lett Jean-Michel, Varsani Arvind, Massart Sébastien, Ogliastro Mylène, Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2023. In : 19e Rencontres de virologie végétale (RVV2023). Résumés. SFV, SFP, RIVOC, IRD, INRAE, CNRS, CIRAD, Agropolis. Aussois : SFV, Résumé, p. 91. Rencontres de virologie végétale (RVV2023). 19, Aussois, France, 15 Janvier 2023/19 Janvier 2023.

Sugarcane mild mosaic virus recognized as a new ampelovirus species infecting sugarcane. Mollov Dimitre S., Filloux Denis, Grinstead Samuel, Bolus Stephen, Claude Lisa, Fernandez Emmanuel, Julian Charlotte, Candresse Thierry, Lockhart Benham E.L., Roumagnac Philippe, Rott Philippe, Daugrois Jean-Heinrich. 2023. In : 19e Rencontres de virologie végétale (RVV2023). Résumés. SFV, SFP, RIVOC, IRD, INRAE, CNRS, CIRAD, Agropolis. Aussois : SFV, Résumé, p. 104. Rencontres de virologie végétale (RVV2023). 19, Aussois, France, 15 Janvier 2023/19 Janvier 2023.

Sugarcane mild mosaic virus: The rediscovery of an identified but unrecognized virus. Mollov Dimitre S., Filloux Denis, Grinstead Samuel, Bolus Stephen, Claude Lisa, Fernandez Emmanuel, Julian Charlotte, Candresse Thierry, Lockhart Benham E.L., Roumagnac Philippe, Rott Philippe, Daugrois Jean-Heinrich. 2023. Plant Pathology, 72 (2) : 312-321.

Virome release of an invasive exotic plant species in Southern France. Moubset Oumaima, Filloux Denis, Fontes Hugo, Julian Charlotte, Fernandez Emmanuel, Claude Lisa, Galzi Serge, Chiroleu Frédéric, Mesleard François, Kraberger Simona, Custer Joy M., Salywon Andrew M., Makings Elizabeth, Martin Patrick Darren, Varsani Arvind, Ravigne Virginie, Roumagnac Philippe. 2023. In : 12th International Congress of Plant Pathology (ICPP 2023): One health for all plants, crops and trees. Book of abstracts. ISPP, SFP. Lyon : ISPP, Résumé, 1081-1082. International Conference on Plant Pathology (ICPP 2023). 12, Lyon, France, 20 Août 2023/25 Août 2023.

from boots on the ground to nucleotides in the sequencer: Advances in the study of plant virus ecology using plant virus metagenomics. Fritz Matthieu, Reggiardo Bérénice, Filloux Denis, Claude Lisa, Fernandez Emmanuel, Mahe Frédéric, Kraberger Simona, Custer Joy M., Becquart Pierre, Ndong Mebaley Telstar, Bohou Kombila Linda, Lenguiya Léadisaelle H., Boundenga Larson, Mombo Illich M., Maganda Gael D., Niama Fabien R., Koumba Jean-Sylvain, Ogliastro Mylène, Yvon Michel, Martin Darren Patrick, Blanc Stéphane, Varsani Arvind, Leroy Eric M., Roumagnac Philippe. 2023. In : 12th International Congress of Plant Pathology (ICPP 2023): One health for all plants, crops and trees. Book of abstracts. ISPP, SFP. Lyon : ISPP, Résumé, p. 1081 International Conference on Plant Pathology (ICPP 2023). 12, Lyon, France, 20 Août 2023/25 Août 2023.

Virion-associated nucleic acid-based metagenomics: A decade of advances in molecular characterization of plant viruses. Moubset Oumaima, François Sarah, Maclot François, Palanga Essowé, Julian Charlotte, Claude Lisa, Fernandez Emmanuel, Rott Philippe, Daugrois Jean-Heinrich, Antoine-Lorquin Aymeric, Bernardo Pauline, Blouin Arnaud G., Temple Coline, Kraberger Simona, Fontenele Rafaela S, Harkins Gordon William, Ma Yuxin, Marais Armelle, Candresse Thierry, Ben Chehida Sélim, Lefeuvre Pierre, Lett Jean-Michel, Varsani Arvind, Massart Sébastien, Ogliastro Mylène, Martin Darren Patrick, Filloux Denis, Roumagnac Philippe. 2022. Phytopathology, 112 (11) : 2253-2272.

Comparison of the virome of quarantined sugarcane varieties and the virome of grasses growing near the quarantine station. Daugrois Jean-Heinrich, Filloux Denis, Julian Charlotte, Claude Lisa, Ferdinand Romain, Fernandez Emmanuel, Fontes Hugo, Rott Philippe, Roumagnac Philippe. 2021. Viruses, 13 (5):922, 17 p.

An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection. Reshetnyak Ganna, Jacobs Jonathan M., Auguy Florence, Sciallano Coline, Claude Lisa, Medina Clemence, Pérez-Quintero Alvaro L., Comte Aurore, Thomas Emilie, Bogdanove Adam J., Koebnik Ralf, Szurek Boris, Diévart Anne, Brugidou Christophe, Lacombe Séverine, Cunnac Sébastien. 2021. Scientific Reports, 11 (1):24141, 20 p.

Nanopore-based detection and characterization of yam viruses. Filloux Denis, Fernandez Emmanuel, Loire Etienne, Claude Lisa, Galzi Serge, Candresse Thierry, Winter Stephan, Jeeva M.L., Makeshkumar T., Martin Darren Patrick, Roumagnac Philippe. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, 53. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 Janvier 2019/31 Janvier 2019.

Reverse transcriptase template switching: a method for without a priori amplification of full-length genome of positive-sense single-strand polyadenylated RNA plant viruses. [P.51]. Claude Lisa, Fernandez Emmanuel, Roumagnac Philippe, Filloux Denis. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, 110. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 Janvier 2019/31 Janvier 2019.

Nanopore-based detection and characterization of yam viruses. Filloux Denis, Fernandez Emmanuel, Loire Etienne, Claude Lisa, Galzi Serge, Candresse Thierry, Winter Stephan, Jeeva M.L., Makeshkumar T., Martin Darren Patrick, Roumagnac Philippe. 2018. Scientific Reports, 8:17879, 11 p.