Résultats pour Auteur : "Mahe, Frédéric"

Global distribution and diversity of marine Parmales. Ban Hiroki, Endo Hisashi, Kuwata Akira, Ogata Hiroshi Y., Berney Cédric (collab.), Mahe Frédéric (collab.), Henry Nicolas (collab.), de Vargas Colomban (collab.). 2024. Microbes and Environments, 39 (1):ME23093, 11 p.

African army ants at the forefront of virome surveillance in a remote tropical forest. Fritz Matthieu, Reggiardo Bérénice, Filloux Denis, Claude Lisa, Fernandez Emmanuel, Mahe Frédéric, Kraberger Simona, Custer Joy M., Becquart Pierre, Mebaley Telsta Ndong, Kombila Linda Bohou, Lenguiya Léadisaelle H., Boundenga Larson, Mombo Illich M., Maganga Gaël Darren, Niama Fabien R., Koumba Jean-Sylvain, Ogliastro Mylène, Yvon Michel, Martin Darren Patrick, Blanc Stéphane, Varsani Arvind, Leroy Eric M., Roumagnac Philippe. 2023. Peer Community Journal, 3:e24, 21 p.

Interpreting phylogenetic placements for taxonomic assignment of environmental DNA. Ewers Isabelle, Rajter Lubomir, Czech Lucas, Mahe Frédéric, Stamatakis Alexandros, Dunthorn Micah. 2023. Journal of Eukaryotic Microbiology, 70 (5):12990, 10 p.

Pan-Arctic plankton community structure and its global connectivity. Ibarbalz Federico M., Henry Nicolas, Mahe Frédéric, Ardyna Mathieu, Zingone Adriana, Scalco Eleonora, Lovejoy Thomas E., Lombard Fabien, Jaillon Olivier, Iudicone Daniele, Malviya Shruti, Sullivan Matthew B., Chaffron Samuel, Karsenti Eric, Babin Marcel, Boss Emmanuel, Wincker Patrick, Zinger Lucie, de Vargas Colomban, Bowler Chris, Karp-Boss Lee. 2023. Elementa, 11 (1):00060, 17 p.

Predicting global distributions of eukaryotic plankton communities from satellite data. Kaneko Hiroto, Endo Hisashi, Henry Nicolas, Berney Cédric, Mahe Frédéric, Poulain Julie, Labadie Karine, Beluche Odette, El Hourany Roy, Acinas Silvia G., Babin Marcel, Bork Peer, Bowler Chris, Cochrane Guy, de Vargas Colomban, Gorsky Gabriel, Guidi Lionel, Grimsley Nigel, Hingamp Pascal, Iudicone Daniele, Jaillon Olivier, Kandels Stefanie, Karsenti Eric, Not Fabrice, Poulton Nicole, Pesant Stéphane, Sardet Christian, Speich Sabrina, Stemmann Lars, Sullivan Matthew B., Sunagawa Shinichi, Chaffron Samuel, Wincker Patrick, Nakamura Ryosuke, Karp-Boss Lee, Boss Emmanuel, Bowler Chris, de Vargas Colomban, Tomii Kentaro, Ogata Hiroshi Y.. 2023. ISME Communications, 3 (1), 9 p.

Fruit fly phylogeny imprints bacterial gut microbiota. Ravigné Virginie, Becker Nathalie, Massol François, Guichoux Erwan, Boury Christophe, Mahe Frédéric, Facon Benoît. 2022. Evolutionary Applications, 15 (10), n.spéc. Evolution in Agricultural Systems : 1621-1638.

Plankton Planet: A frugal, cooperative measure of aquatic life at the planetary scale. de Vargas Colomban, Le Bescot Noan, Pollina Thibault, Henry Nicolas, Romac Sarah, Colin Sébastien, Haëntjens Nils, Carmichael Margaux, Berger Calixte, Le Guen David, Decelle Johan, Mahe Frédéric, Poulain Julie, Malpot Emmanuel, Beaumont Carole, Hardy Michel, Guiffant Damien, Probert Ian, Gruber David F., Allen Andrew E., Gorsky Gabriel, Follows Michael J., Pochon Xavier, Troublé Romain, Cael B.B., Lombard Fabien, Boss Emmanuel, Prakash Manu. 2022. Frontiers in Marine Science, 9:936972, 17 p.

Swarm v3: Towards tera-scale amplicon clustering. Mahe Frédéric, Czech Lucas, Stamatakis Alexandros, Quince Christopher, de Vargas Colomban, Dunthorn Micah, Rognes Torbjørn. 2022. Bioinformatics, 38 (1) : 267-269.

Towards a microbiota-based understanding of sugarcane health. Sanguin Hervé, Sood Sushma, Tournier Estelle, Julian Charlotte, Fernandez Emmanuel, Mahe Frédéric, Filloux Denis, Daugrois Jean-Heinrich, Roumagnac Philippe, Rott Philippe. 2022. Sugar Journal (June), Résumé : 28-29. ASSCT 2022 Annual Meeting, Bonita Springs, États-Unis, 21 Juin 2022/23 Juin 2022.

pr2-primers: An 18S rRNA primer database for protists. Vaulot Daniel, Geisen Stefan, Mahe Frédéric, Bass David. 2022. Molecular Ecology Resources, 22 (1) : 168-179.

The rhizosphere microbiome: A key component of sustainable cork oak forests in trouble. Maghnia Fatima Zahra, Abbas Younes, Mahe Frédéric, Prin Yves, El Ghachtouli Naima, Duponnois Robin, Sanguin Hervé. 2019. Forest Ecology and Management, 434 : 29-39.

Clarifying the relationships between microsporidia and cryptomycota. Bass David, Czech Lucas, Williams Bryony A. P., Berney Cédric, Dunthorn Micah, Mahe Frédéric, Torruella Guifré, Stentiford Grant D., Williams Tom A.. 2018. Journal of Eukaryotic Microbiology, 65 (6) : 773-782.

VSEARCH: a versatile open source tool for metagenomics. Rognes Torbjørn, Flouri Tomás, Nichols Ben, Quince Christopher, Mahe Frédéric. 2016. PeerJ, 4 (e2584), 22 p.

from boots on the ground to nucleotides in the sequencer: Advances in the study of plant virus ecology using plant virus metagenomics. Fritz Matthieu, Reggiardo Bérénice, Filloux Denis, Claude Lisa, Fernandez Emmanuel, Mahe Frédéric, Kraberger Simona, Custer Joy M., Becquart Pierre, Ndong Mebaley Telstar, Bohou Kombila Linda, Lenguiya Léadisaelle H., Boundenga Larson, Mombo Illich M., Maganda Gael D., Niama Fabien R., Koumba Jean-Sylvain, Ogliastro Mylène, Yvon Michel, Martin Darren Patrick, Blanc Stéphane, Varsani Arvind, Leroy Eric M., Roumagnac Philippe. 2023. In : 12th International Congress of Plant Pathology (ICPP 2023): One health for all plants, crops and trees. Book of abstracts. ISPP, SFP. Lyon : ISPP, Résumé, p. 1081 International Conference on Plant Pathology (ICPP 2023). 12, Lyon, France, 20 Août 2023/25 Août 2023.

How deep can ectomycorrhizae go? A case study down to 4 meter depth in a Brazilian Eucalyptus plantation under rainfall reduction. Robin Agnès, Pradier Céline, Sanguin Hervé, Mahe Frédéric, Lambais George Rodrigues, de Araujo Pereira Arthur Prudêncio, Germon Amandine, Cintra Maiele, Tisseyre Pierre, Pablo Anne-laure, Heuillard Pauline, Saudavet Marie, Bouillet Jean-Pierre, Androte Fernando Dini, Plassard Claude, Bran Nogueira Cardoso Elke Jurandy, Laclau Jean-Paul, Hinsinger Philippe, Jourdan Christophe. 2018. In : Eucalyptus 2018: Managing Eucalyptus plantation under global changes. Abstracts book. CIRAD, IUFRO, MUSE. Montpellier : CIRAD, Résumé, 38-39. ISBN 978-2-87614-743-0 Eucalyptus 2018, Montpellier, France, 17 Septembre 2018/21 Septembre 2018.

Development of MetaXplor: a viral metagenomics database. P29. Filloux Denis, Petel Adrien, Sempere Guilhem, Claverie Sohini, Lefeuvre Pierre, Mahe Frédéric, Roumagnac Philippe. 2018. In : Book of abstract Pathobiome 2018. INRA. Ajaccio : INRA, Résumé, 50. Pathobiome, Ajaccio, France, 18 Mars 2018/20 Mars 2018.

Development of bioinformatics tools for sequence data mining and virus discovery. [P40]. Filloux Denis, Petel Adrien, Sempere Guilhem, Claverie Sohini, Lefeuvre Pierre, Mahe Frédéric, Roumagnac Philippe. 2017. In : Livre des résumés des 16 ème Rencontres de virologie végétale. CIRAD, CNRS, INRA, IRD, SFP. Aussois : CIRAD-CNRS, 101. Rencontres de virologie végétale, Aussois, France, 15 Janvier 2017/19 Janvier 2017.

A fungal community-based high throughput approach to determine ecological bio-indicators of Moroccan cork oak decline. Maghnia Fatima Zahra, Mahe Frédéric, Bakkali-Yakhlef Salahedine, Kerdouh Benaissa, Ouajdi M., Prin Yves, El Ghachtouli Naima, Duponnois Robin, Abbas Younes, Sanguin Hervé. 2016. In : EcoSummit 2016 - Ecological Sustainability: Engineering Change. Montpellier : INRA-IRD, 1 poster International EcoSummit Congress 2016. 5, Montpellier, France, 29 Août 2016/1 Septembre 2016.

Are mycorrhizal-bacterial community networks impacted by the sexual type of their host tree? Sanguin Hervé, Mahe Frédéric, Tisseyre Pierre, Tournier Estelle, Ouahmane Lahcen, Le Roux Christine, Duponnois Robin, Médail Frédéric, Dagher-Kharrat Magda Bou, La Malfa Stefano, Baumel Alex, Prin Yves. 2016. In : Sfécologie 2016. Marseille : Sfé, Résumé, 1 p. International Conference on Ecological Sciences, Marseille, France, 24 Octobre 2016/28 Octobre 2016.