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The complex polyploid genome architecture of sugarcane. Healey Adam, Garsmeur Olivier, Lovell John, Shengquiang S., Sreedasyam Avinash, Jenkins Jerry, Plott C.B., Piperidis George, Pompidor Nicolas, Llaca V., Metcalfe Daniel J., Dolezel Jaroslav, Cápal P., Carlson J.E., Hoarau Jean-Yves, Hervouet Catherine, Zini Cyrille, Diévart Anne, Lipzen Anna, Williams M., Boston L.B., Webber J., Keymanesh K., Tejomurthula S., Rajasekar S., Suchecki R., Furtado Agnelo, May G., Parakkal P., Simmons B.A., Barry K., Henry Robert, Grimwood Jane, Aitken Karen S., Schmutz J., D'Hont Angélique. 2024. Nature, 628 : 804-810.

Legacy genetics of Arachis cardenasii in the peanut crop shows the profound benefits of international seed exchange. Bertioli David J., Clevenger Josh, Godoy Igancio J., Stalker H.T., Wood Shona, Santos Joáo F., Ballén-Taborda Carolina, Abernathy Brian, Azevedo Vania, Campbell Jacqueline, Chavarro Carolina, Chu Ye, Farmer Andrew, Fonceka Daniel, Gao Dongying, Grimwood Jane, Halpin Neil, Korani Walid, Michelotto Marcos D., Ozias-Akins Peggy, Vaughn Justin, Youngblood Ramey, Moretzsohn Márcio C., Wright Graeme C., Jackson Scott A., Cannon Steven B., Scheffler Brian, Leal-Bertioli Soraya C.M.. 2021. Proceedings of the National Academy of Sciences of the United States of America, 118 (38):e2104899118, 9 p.

A mosaic monoploid reference sequence for the highly complex genome of sugarcane. Garsmeur Olivier, Droc Gaëtan, Antonise Rudie, Grimwood Jane, Potier Bernard, Aitken Karen S., Jenkins Jerry, Martin Guillaume, Charron Carine, Hervouet Catherine, Costet Laurent, Yahiaoui Nabila, Healey Adam, Sims David, Cherukuri Yesesri, Sreedasyam Avinash, Kilian Andrzej, Chan Agnes P., Van Sluys Marie-Anne, Swaminathan Kankshita, Town Christopher, Berges Hélène, Simmons Blake, Glaszmann Jean-Christophe, Van der Vossen Edwin, Henry Robert, Schmutz Jeremy, D'Hont Angélique. 2018. Nature Communications, 9:2638, 10 p.

High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly. Bartholomé Jérôme, Mandrou Eric, Mabiala André, Jenkins Jerry, Nabihoudine Ibouniyamine, Klopp Christophe, Schmutz Jeremy, Plomion Christophe, Gion Jean-Marc. 2015. New Phytologist, 206 (4), n.spéc. Featured papers on 'Eucalyptus genome' : 1283-1296.

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Wu Guohong Albert, Prochnik Simon, Jenkins Jerry, Salse Jérôme, Hellsten Uffe, Murat Florent, Perrier Xavier, Ruiz Manuel, Scalabrin Simone, Terol Javier F., Takita Marco Aurélio, Labadie Karine, Poulain Julie, Couloux Arnaud, Jabbari Kamel, Cattonaro Frederica, Del Fabbro Cristian, Pinosio Sara, Zuccolo Andrea, Chapman Jarrod, Grimwood Jane, Tadeo Francisco, Estornell Leandro H., Muñoz-Sanz Juan V., Ibáñez Victoria, Herrero-Ortega Amparo, Aleza Pablo, Pérez-Pérez Júlian, Ramón Daniel, Brunel Dominique, Luro François, Chen Chunxian, Farmerie William G., Desany Brian, Kodira Chinnappa, Mohiuddin Mohammed, Harkins Tim, Fredrikson Karin, Burns Paul, Lomsadze Alexandre, Borodovsky Mark, Reforgiato Giuseppe, Freitas-Astúa Juliana, Quetier Francis, Navarro Luis, Roose Mikeal L., Wincker Patrick, Schmutz Jeremy, Morgante Michele, Machado Marcos Antonio, Talon Manuel, Ollitrault Patrick, Gmitter Frederick G. Jr., Rokhsar Daniel S.. 2014. Nature Biotechnology, 32 : 656-662.

Deeper sequencing reveals a greater diversity of transcripts in the complex sugarcane genome. Pazhany Adhini S., Perlo Virginie, Botha Frederick C., Furtado Agnelo, O'Keeffe Angela, Correr Fernando, Masouleh Ardy Kharabian, Aitken Karen S., D'Hont Angélique, Healey Adam, Grimwood Jane, Barry Kerrie W., Schmutz Jeremy, Henry Robert. 2021. In : Proceedings of International Conference on Sugarcane Research: Sugarcane for Sugar and Beyond. Palaniswami C. (ed.), Hemaprabha G. (ed.), Viswanathan R. (ed.), Karuppaiyan R. (ed.), Mohanraj K. (ed.), Mahadeva Swamy H.K. (ed.), Bakshi Ram (ed.). ICAR, SBI, Tamil Nadu Agricultural University, SSRD. Coimbatore : SSRD, 191-192. ISBN 978-93-85267-30-7 International Conference on Sugarcane Research: Sugarcane for Sugar and Beyond (CaneCon2021), Coimbatore, Inde, 19 Juin 2021/22 Juin 2021.

Leveraging multiple sequencing technologies to generate a haplotype specific assembly of sugarcane R570. [W1018]. Healey Adam, Lovell John, Garsmeur Olivier, Jenkins Jerry, Grimwood Jane, Aitken Karen S., Henry Robert, D'Hont Angélique, Schmutz Jeremy. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, 443. Plant and Animal Genome. 28, San Diego, États-Unis, 11 Janvier 2020/15 Janvier 2020.

Sequencing the transcriptome of R570 to explore the complexity of the sugarcane genome [W1019]. Kumar Pazhany Adhini Sudhindra, Perlo Virginie, Botha Frikkie, Furtado Agnelo, O'Keeffe Angela, Karabian Masouleh Ardy, Henry Robert, Aitken Karen S., D'Hont Angélique, Healey Adam, Grimwood Jane, Barry Kerrie W., Schmutz Jeremy. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, 443-444. Plant and Animal Genome. 28, San Diego, États-Unis, 11 Janvier 2020/15 Janvier 2020.

The importance of sequencing depth for a complex transcriptome [W952]. Kumar Pazhany Adhini Sudhindra, Perlo Virginie, Botha Frikkie, Furtado Agnelo, O'Keeffe Angela, Karabian Masouleh Ardy, Henry Robert, Aitken Karen S., D'Hont Angélique, Healey Adam, Grimwood Jane, Barry Kerrie W., Schmutz Jeremy. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, 417. Plant and Animal Genome. 28, San Diego, États-Unis, 11 Janvier 2020/15 Janvier 2020.

A reference sequence of the monoploid genome of sugarcane. [W950]. Garsmeur Olivier, Droc Gaëtan, Grimwood Jane, Potier Bernard, Aitken Karen S., Jenkins Jerry, Charron Carine, Martin Guillaume, Van der Vossen Edwin, Kilian Andrzej, Berges Hélène, Simmons Blake, Schmutz Jeremy, D'Hont Angélique. 2018. In : Proceedings Plant and Animal Genome XXVI Conference. PAG. San Diego : PAG, Résumé, 1 p. Plant and Animal Genomes Conference. 26, San Diego, États-Unis, 13 Janvier 2018/17 Janvier 2018.