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Comment prélever du sol pour le projet TROPISM-Réunion ? Projet TROPISM - REU, Université de la Réunion - REU, CIRAD - REU, INRAE - FRA. 2024. Saint-Pierre : Projet TROPISM, 1 vidéo (3 min 06 sec)

Distinct communities and differing dispersal routes in bacteria and fungi of honey bees, honey, and flowers. Tiusanen Mikko, Becker-Scarpitta Antoine, Wirta Helena. 2024. Microbial Ecology, 87:100, 10 p.

Global distribution and diversity of marine Parmales. Ban Hiroki, Endo Hisashi, Kuwata Akira, Ogata Hiroshi Y., Berney Cédric (collab.), Mahe Frédéric (collab.), Henry Nicolas (collab.), de Vargas Colomban (collab.). 2024. Microbes and Environments, 39 (1):ME23093, 11 p.

The impact of fungi on soil protist communities in European cereal croplands. Degrune Florine, Dumack Kenneth, Ryo Masahiro, Garland Gina, Romdhane Sana, Saghaï Aurélien, Banerjee Samiran, Edlinger Anna, Herzog Chantal, Pescador David S., García-Palacios Pablo, Fiore-Donno Anne-Marie, Bonkowski Michael, Hallin Sara, van der Heijden Marcel G.A., Maestre Fernando T., Philippot Laurent, Glemnitz Michael, Sieling Klaus, Rillig Matthias C.. 2024. Environmental Microbiology, 26 (7):e16673, 9 p.

mbctools: A user-friendly metabarcoding and cross-platform pipeline for analyzing multiple amplicon sequencing data across a large diversity of organisms. Barnabé Christian, Sempere Marie-Elyse, Manzanilla Vincent, Moo-Millan Joel, Amblard-Rambert Antoine, Waleckx Etienne. 2024. Peer Community Journal, 4:e114, 13 p.

Bacterial diversity and community structure of some traditional African and European cereal-based fermented foods identified by high-throughput sequencing. Bationo Fabrice, Seyoum Yohannes, Chochois Vincent, Tamene Aynadis, Kariluoto Susanna, Saris Per, Baye Kaleab, Edelmann Minnamari, Leconte Nicolas, Humblot Christèle. 2023. Food Bioscience, 56:103346, 9 p.

Evaluation of 96‐well high‐throughput DNA extraction methods for 16S rRNA gene metabarcoding. Chapuis Marie-Pierre, Benoit Laure, Galan Maxime. 2023. Molecular Ecology Resources, 23 (7) : 1509-1525.

Honeybees' foraging choices for nectar and pollen revealed by DNA metabarcoding. Leponiemi Matti, Freitak Dalial, Moreno-Torres Miguel, Pferschy-Wenzig Eva-Maria, Becker-Scarpitta Antoine, Tiusanen Mikko, Vesterinen Eero J., Wirta Helena. 2023. Scientific Reports, 13:14753, 15 p.

Bio-inoculant et communautés de champignons mycorhiziens de trois variétés de riz pluvial à Madagascar. Rakotoarivelo Njaramanana Naliharilala Miora, Taschen Elisa, Rahetlah Volatsara Baholy, Trap Jean, Autfray Patrice. 2022. . INRAE. Dijon : INRAE, Résumé, 1 p. Journée fancophones des mycorhizes (JFM6). 6, Dijon, France, 7 Juin 2022/8 Juin 2022.

Decay of similarity across tropical forest communities: Integrating spatial distance with soil nutrients. Peguero Guille, Ferrín Miquel, Sardans Jordi, Verbruggen Erik, Ramírez-Rojas Irene, Van Langenhove Leandro, Verryckt Lore T., Murienne Jerome, Iribar Amaia, Zinger Lucie, Grau Oriol, Orivel Jérôme, Stahl Clément, Courtois Elodie A., Asensio Dolores, Gargallo‐Garriga Albert, LLusià Joan, Margalef Olga, Ogaya Romà, Richter Andreas, Janssens Ivan A., Peñuelas Josep. 2022. Ecology, 103 (2):e03599, 11 p.

Fruit fly phylogeny imprints bacterial gut microbiota. Ravigné Virginie, Becker Nathalie, Massol François, Guichoux Erwan, Boury Christophe, Mahe Frédéric, Facon Benoît. 2022. Evolutionary Applications, 15 (10), n.spéc. Evolution in Agricultural Systems : 1621-1638.

The impact of the rice production system (irrigated vs lowland) on root-associated microbiome from farmer's fields in western Burkina Faso. Barro Mariam, Wonni Issa, Simonin Marie, Kassankogno Abalo Itolou, Klonowska Agnieszka, Moulin Lionel, Béna Gilles, Somda Irénée, Brunel Caroline, Tollenaere Charlotte. 2022. FEMS Microbiology, Ecology, 98 (9):fiac085, 17 p.

Food for everyone: Differential feeding habits of cryptic bat species inferred from DNA metabarcoding. Andriollo Tommy, Michaux Johan, Ruedi Manuel. 2021. Molecular Ecology, 30 (18) : 4584-4600.

Modulation of trypanosome establishment in Glossina palpalis palpalis by its microbiome in the Campo sleeping sickness focus, Cameroon. Ngambia Freitas François Sougal, Njiokou Flobert, Tsagmo Ngoune Jean Marc, Sempere Guilhem, Berthier David, Geiger Anne. 2021. Infection, Genetics and Evolution, 90:104763, 11 p.

Terroir is the main driver of the epiphytic bacterial and fungal communities of mango carposphere in Reunion Island. Taibi Ahmed, Rivallan Ronan, Broussolle Véronique, Pallet Dominique, Lortal Sylvie, Meile Jean-Christophe, Constancias Florentin. 2021. Frontiers in Microbiology, 11:619226, 19 p.

metaXplor: An interactive viral and microbial metagenomic data manager. Sempere Guilhem, Petel Adrien, Abbé Magsen, Lefeuvre Pierre, Roumagnac Philippe, Mahé Frédéric, Baurens Gaël, Filloux Denis. 2021. GigaScience, 10 (2):giab001 : 1-8.

Differences in microbiota between two multilocus lineages of the sugarcane Aphid (Melanaphis sacchari) in the continental United States. Holt Jocelyn R., Styer Alex, White Jennifer A., Armstrong John Scott, Nibouche Samuel, Costet Laurent, Malacrinò Antonino, Antwi Josephine B., Wulff Jason, Peterson Garry, McLaren Neal, Medina Raul F.. 2020. Annals of the Entomological Society of America, 113 (4), n.spéc. Advanced Genetic Analysis of Invasive Arthropods:saaa003 : 257-265.

Key questions for next-generation biomonitoring. Makiola Andreas, Compson Zacchaeus G., Baird Donald J., Barnes Matthew A., Boerlijst Sam P., Bouchez Agnès, Brennan Georgina, Bush Alex, Canard Elsa, Cordier Tristan, Creer Simon, Curry Allen R., David Patrice, Dumbrell Alex J., Gravel Dominique, Hajibabaei Mehrdad, Hayden Brian, Van der Hoorn Berry, Jarne Philippe, Jones J. Iwan, Karimi Battle, Keck François, Kelly Martyn, Knot Ineke E., Krol Louie, Massol François, Monk Wendy A., Murphy John, Pawlowski Jan, Poisot Thimotée, Porter Teresita M., Randall Kate C., Ransome Emma, Ravigné Virginie, et al.. 2020. Frontiers in Environmental Science, 7 (197), 14 p.

Role of trees and herbaceous vegetation beneath trees in maintaining arbuscular mycorrhizal communities in temperate alley cropping systems. Battie Laclau Patricia, Taschen Elisa, Plassard Claude, Dezette Damien, Abadie Josiane, Arnal Didier, Benezech Philippe, Duthoit Maxime, Pablo Anne-laure, Jourdan Christophe, Laclau Jean-Paul, Bertrand Isabelle, Taudière Adrien, Hinsinger Philippe. 2020. Plant and Soil, 453 : 153-171.

The belowground bacterial and fungal communities differed in their significance as microbial indicator of Moroccan carob habitats. Khassali Hamza, Baumel Alex, Mahé Frédéric, Tournier Estelle, Tisseyre Pierre, Prin Yves, Ouahmane Lahcen, Sanguin Hervé. 2020. Ecological Indicators, 114:106341, 9 p.

BIOINDIC. Identification d'indicateurs biologiques du fonctionnement des écosystèmes miniers restaurés. Carriconde Fabian (ed.), Fernandez Nuñez Nicolas, Ripoll Julie, Leopold Audrey, Fogliani Bruno, Ititiaty Awiya, Lelièvre Mélanie, Letellier Kelly, Maggia Laurent, Bidau Géraldine, L'Huillier Laurent, Amir Hamid, Cavaloc Yvon, Ducousso Marc, Galiana Antoine, Hannibal Laure, Jourand Philippe, Lebrun Michel. 2019. s.l. : IAC-CIRAD, 272 p.

Methodological optimization and standardization of the metabarcoding of insects gut microbiome. Benoit Laure, Galan Maxime, Piry Sylvain, Chapuis Marie-Pierre. 2019. In : 13th International Congress of Orthopterology: Abstract book 2019. University Ibn Zohr, National Center for Control of Desert Locust, Orthopterists Society. Agadir : University Ibn Zohr, Résumé, p. 198. (Metaleptea) International Congress of Orthopterology. 13, Agadir, Maroc, 24 Mars 2019/28 Mars 2019.

Optimize the plant microbiota to increase plant growth and health. Barret M., Dufour Philippe, Durand-Tardif Mylène, Mariadassou M., Mougel Christophe, Perez P., Roumagnac Philippe, Sanguin Hervé, Steinberg Christian, Szambien M.. 2019. Paris : GIS Biotechnologies Vertes, 12 p.

Surface sterilization methods impact measures of internal microbial diversity in ticks. Binetruy Florian, Dupraz Marlène, Buysse Marie, Duron Olivier. 2019. Parasites and Vectors, 12:268, 10 p.

The composition and abundance of bacterial communities residing in the gut of Glossina palpalis palpalis captured in two sites of southern Cameroon. Tsagmo Ngoune Jean Marc, Reveillaud Julie, Sempere Guilhem, Njiokou Flobert, Melachio Trésor T., Abate Luc, Tchioffo Majoline T., Geiger Anne. 2019. Parasites and Vectors, 12:151, 15 p.

Worldwide occurrence and activity of the reef-building coral symbiont Symbiodinium in the open ocean. Decelle Johan, Carradec Quentin, Pochon Xavier, Henry Nicolas, Romac Sarah, Mahé Frédéric, Dunthorn Micah, Kourlaiev Artem, Voolstra Christian R., Wincker Patrick, de Vargas Colomban. 2018. Current Biology, 28 (22):e3 : 3625-3633.