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Old foe, New host: Epidemiology, genetic diversity, and pathogenic characterization of maize streak virus in rice fields from Burkina Faso. Magdy Ibrahim Fouad Noun, Barro Mariam, Bangratz Martine, Sérémé Drissa, Filloux Denis, Fernandez Emmanuel, Julian Charlotte, Saïbou Nignan, Kassankogno Abalo Itolou, Guigma Abdoul Kader, Roumagnac Philippe, Wonni Issa, Tollenaere Charlotte, Poulicard Nils. 2024. Phytobiomes Journal, 13 p

Virome release of an invasive exotic plant species in southern France. Moubset Oumaima, Filloux Denis, Fontes Hugo, Julian Charlotte, Fernandez Emmanuel, Galzi Serge, Blondin Laurence, Ben Chehida Sélim, Lett Jean-Michel, Mesleard François, Kraberger Simona, Custer Joy M., Salywon Andrew M., Makings Elizabeth, Marais Armelle, Chiroleu Frédéric, Lefeuvre Pierre, Martin Darren Patrick, Candresse Thierry, Varsani Arvind, Ravigné Virginie, Roumagnac Philippe. 2024. Virus Evolution, 10 (1):veae025, 16 p.

At least seven distinct rotavirus genotype constellations in bats with evidence of reassortment and zoonotic transmissions. Simsek Ceren, Corman Victor Max, Everling Hermann Ulrich, Lukashev Alexander N., Rasche Andrea, Maganga Gaël Darren, Binger Tabea, Jansen Daan, Beller Leen, Deboutte Ward, Gloza-Rausch Florian, Seebens-Hoyer Antje, Yordanov Stoian, Sylverken Augustina, Oppong Samuel, Adu Sarkodie Yaw, Vallo Peter, Leroy Eric M., Bourgarel Mathieu, Yinda Kwe Claude, Van Ranst Eric, Drosten Christian, Drexler Jan Felix, Matthijnssens Jelle. 2021. Mbio, 12 (1):e02755-20, 17 p.

Characterisation of the viral community associated with the Alfalfa Weevil (Hypera postica) and its host plant, Alfalfa (Medicago sativa). François Sarah, Antoine-Lorquin Aymeric, Kulikowski Maximilien, Frayssinet Marie, Filloux Denis, Fernandez Emmanuel, Roumagnac Philippe, Froissart Rémy, Ogliastro Mylène. 2021. Viruses, 13 (5):791, 17 p.

Comparison of the virome of quarantined sugarcane varieties and the virome of grasses growing near the quarantine station. Daugrois Jean-Heinrich, Filloux Denis, Julian Charlotte, Claude Lisa, Ferdinand Romain, Fernandez Emmanuel, Fontes Hugo, Rott Philippe, Roumagnac Philippe. 2021. Viruses, 13 (5):922, 17 p.

Nanopore sequencing is a credible alternative to recover complete genomes of geminiviruses. Ben Chehida Sélim, Filloux Denis, Fernandez Emmanuel, Moubset Oumaima, Hoareau Murielle, Julian Charlotte, Blondin Laurence, Lett Jean-Michel, Roumagnac Philippe, Lefeuvre Pierre. 2021. Microorganisms, 9:903, 15 p.