Unexpected and novel putative viruses in the sediments of a deep-dark permanently anoxic freshwater habitat

Borrel Guillaume, Colombet Jonathan, Robin Agnès, Lehours Anne-Catherine, Prangishvili David, Sime-Ngando Télesphore. 2012. Unexpected and novel putative viruses in the sediments of a deep-dark permanently anoxic freshwater habitat. ISME Journal, 6 : 2119-2127.

Quartile : Outlier, Sujet : ECOLOGY / Quartile : Outlier, Sujet : MICROBIOLOGY

Résumé : Morphological diversity, abundance and community structure of viruses were examined in the deep and anoxic sediments of the volcanic Lake Pavin (France). The sediment core, encompassing 130 years of sedimentation, was subsampled every centimeter. High viral abundances were recorded and correlated to prokaryotic densities. Abundances of viruses and prokaryotes decreased with the depth, contrasting the pattern of virus-to-prokaryote ratio. According to fingerprint analyses, the community structure of viruses, bacteria and archaea gradually changed, and communities of the surface (0-10 cm) could be discriminated from those of the intermediate (11-27 cm) and deep (28-40 cm) sediment layers. Viral morphotypes similar to virions of ubiquitous dsDNA viruses of bacteria were observed. Exceptional morphotypes, previously never reported in freshwater systems, were also detected. Some of these resembled dsDNA viruses of hyperthermophilic and hyperhalophilic archaea. Moreover, unusual types of spherical and cubic virus-like particles (VLPs) were observed. Infected prokaryotic cells were detected in the whole sediment core, and their vertical distribution correlated with both viral and prokaryotic abundances. Pleomorphic ellipsoid VLPs were visible in filamentous cells tentatively identified as representatives of the archaeal genus Methanosaeta, a major group of methane producers on earth.

Mots-clés Agrovoc : paléontologie, virus, Bacteria, adn, sédiment, anoxie, lac, biodiversité, morphologie

Mots-clés géographiques Agrovoc : Auvergne, France

Classification Agris : 000 - Autres thèmes
P34 - Biologie du sol

Champ stratégique Cirad : Hors axes (2005-2013)

Auteurs et affiliations

• Borrel Guillaume, CNRS (FRA)
• Colombet Jonathan, CNRS (FRA)
• Robin Agnès, CIRAD-PERSYST-UMR Eco&Sols (FRA)
• Lehours Anne-Catherine, CNRS (FRA)
• Prangishvili David, Institut Pasteur (FRA)
• Sime-Ngando Télesphore, CNRS (FRA)

Source : Cirad - Agritrop (https://agritrop.cirad.fr/567193/)

Métriques

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