Transcription factors and molecular markers revealed asymmetric contributions between allotetraploid Upland cotton and its two diploid ancestors

Jazayeri Seyed Mehdi, Villamar-Torres Ronald Oswaldo, Zambrano-Vega Cristian, García Cruzaty Luz Cecilia, Oviedo-Bayas Byron, Do Amaral Santos Milena, Maddela Naga Raju, Ghafoor Seyed Mohammad Hossein Seyed Mohammad Hossein Ale Seyed, Viot Christopher. 2020. Transcription factors and molecular markers revealed asymmetric contributions between allotetraploid Upland cotton and its two diploid ancestors. Plant Breeding, 79 (1), 17 p.

Quartile : Q2, Sujet : AGRONOMY / Quartile : Q3, Sujet : PLANT SCIENCES / Quartile : Q4, Sujet : BIOTECHNOLOGY & APPLIED MICROBIOLOGY

Résumé : Three Gossypium species have been used to breed cotton as they vary in their fiber production and resistance to stresses. Transcription factors (TFs) mostly are present in different copies or isoforms by which they conduct their regulation. Their copy number can determine organism behavior to a cue. Simple sequence repeats (SSRs) are one of the most informative and versatile molecular markers. Transcription factors of three Gossypium species were compared in silico. Seventy eight percent of TFs were common between the three species. Single copy for each species were 6057 TF. Gossypium hirsutum and G. raimondii shared the most common interspecific TF. Gossypium arboreum species-specific TF were the least. MYB TF family with its subfamilies is the most abundant followed by bHLH and AP2/ERF family. Gossypium hirsutum generally possesses more TF copies compared to other two species. The 2109 single-copy clusters indicate that G. hirsutum has received one copy from only one parent. The five most abundant SSR markers of TF were dinucleotides AT, TA, TC, CT and TG belonging to G. raimondii. For G. arboreum and G. hirsutum they were trinucleotides CAA, CGA, TGA, GAA (CAT: G. hirsutum) and TCA. The findings suggest that there is regulatory difference between the three Gossypium species for fiber production and insect attack response. The differences may be due to some adaptive deletion events during speciation of G. hirsutum from its parents G. arboreum and G. raimondii.

Mots-clés Agrovoc : Gossypium, facteur de transcription, marqueur génétique, polyploïdie, diploïdie, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii

Mots-clés libres : Cotton, Transcription factors, Asymmetric contribution, Allotetraploid, Diploid ancestor

Classification Agris : F30 - Génétique et amélioration des plantes

Champ stratégique Cirad : CTS 1 (2019-) - Biodiversité

Auteurs et affiliations

• Jazayeri Seyed Mehdi, Universidad Nacional de Colombia (COL) - auteur correspondant
• Villamar-Torres Ronald Oswaldo, Universidad Técnica Estatal de Quevedo (ECU)
• Zambrano-Vega Cristian, Universidad Técnica Estatal de Quevedo (ECU)
• García Cruzaty Luz Cecilia, Universidad Técnica de Manabi (ECU)
• Oviedo-Bayas Byron, Universidad Técnica Estatal de Quevedo (ECU)
• Do Amaral Santos Milena, UESC (BRA)
• Maddela Naga Raju, Universidad Técnica de Manabi (ECU)
• Ghafoor Seyed Mohammad Hossein Seyed Mohammad Hossein Ale Seyed, Arak University (IRN)
• Viot Christopher, CIRAD-BIOS-UMR AGAP (FRA) ORCID: 0000-0001-6321-4741

Source : Cirad-Agritrop (https://agritrop.cirad.fr/595414/)

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