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allodb: An R package for biomass estimation at globally distributed extratropical forest plots

Gonzalez‐Akre Erika B., Piponiot Camille, Lepore Mauro, Herrmann Valentine, Lutz James A., Baltzer Jennifer L., Dick Christopher W., Gilbert Gregory S., He Fangliang, Heym Michael, Huerta Alejandra I., Jansen Patrick A., Johnson Daniel J., Knapp Nikolai, Král Kamil, Lin Dunmei, Malhi Yadvinder, McMahon Sean M., Myers Jonnathan A., Orwig David, Rodríguez-Hernández Diego I., Russo Sabrina E., Shue Jessica, Wang Xugao, Wolf Amy, Yang Tonghui, Davies Stuart J., Anderson‐Teixeira Kristina. 2022. allodb: An R package for biomass estimation at globally distributed extratropical forest plots. Methods in Ecology and Evolution, 13 (2) : 330-338.

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Url - jeu de données - Entrepôt autre : https://docs.ropensci.org/allodb/

Résumé : Allometric equations for calculation of tree above-ground biomass (AGB) form the basis for estimates of forest carbon storage and exchange with the atmosphere. While standard models exist to calculate forest biomass across the tropics, we lack a standardized tool for computing AGB across boreal and temperate regions that comprise the global extratropics. Here we present an integrated R package, allodb, containing systematically selected published allometric equations and proposed functions to compute AGB. The data component of the package is based on 701 woody species identified at 24 large Forest Global Earth Observatory (ForestGEO) forest dynamics plots representing a wide diversity of extratropical forests. A total of 570 parsed allometric equations to estimate individual tree biomass were retrieved, checked and combined using a weighting function designed to ensure optimal equation selection over the full tree size range with smooth transitions across equations. The equation dataset can be customized with built-in functions that subset the original dataset and add new equations. Although equations were curated based on a limited set of forest communities and number of species, this resource is appropriate for large portions of the global extratropics and can easily be expanded to cover novel forest types.

Mots-clés Agrovoc : biomasse, forêt tropicale, allométrie, forêt, télédétection, arbre forestier, ressource forestière, biomasse aérienne des arbres, arbre à buts multiples, modèle mathématique

Mots-clés libres : Above-ground biomass, Extratropics, Forest carbon storage, Forest Global Earth Observatory (ForestGEO), R, Temperate forest, Tree allometry, Tree biomass

Agences de financement hors UE : Forest Global Earth Observatory Smithsonian

Auteurs et affiliations

  • Gonzalez‐Akre Erika B., Smithsonian National Zoo and Conservation Biology (USA)
  • Piponiot Camille, CIRAD-ES-UPR Forêts et sociétés (FRA) ORCID: 0000-0002-3473-1982
  • Lepore Mauro, Smithsonian Institution (USA)
  • Herrmann Valentine, Smithsonian National Zoo and Conservation Biology (USA)
  • Lutz James A., Utah State University (USA)
  • Baltzer Jennifer L., Wilfrid Laurier University (CAN)
  • Dick Christopher W., University of Michigan (USA)
  • Gilbert Gregory S., UC (USA)
  • He Fangliang, University of Alberta (CAN)
  • Heym Michael, Technical University of Munich (DEU)
  • Huerta Alejandra I., North Carolina State University (USA)
  • Jansen Patrick A., Wageningen University (NLD)
  • Johnson Daniel J., University of Florida (USA)
  • Knapp Nikolai, Helmholtz Centre for Environmental Research (DEU)
  • Král Kamil, Silva Tarouca Research Institute (CZE)
  • Lin Dunmei, Chongqing University (CHN)
  • Malhi Yadvinder, University of Oxford (GBR)
  • McMahon Sean M., Smithsonian Environmental Research Center (USA)
  • Myers Jonnathan A., Washington University (USA)
  • Orwig David, The Harvard Forest (USA)
  • Rodríguez-Hernández Diego I., Sun Yat-Sen University (CHN)
  • Russo Sabrina E., University of Nebraska-Lincoln (USA)
  • Shue Jessica, Smithsonian Environmental Research Center (USA)
  • Wang Xugao, CAS (CHN)
  • Wolf Amy, University of Wisconsin (USA)
  • Yang Tonghui, Ningbo Academy of Agricultural Science (CHN)
  • Davies Stuart J., STRI (USA)
  • Anderson‐Teixeira Kristina, Smithsonian Conservation Biology Institute (USA) - auteur correspondant

Source : Cirad-Agritrop (https://agritrop.cirad.fr/606419/)

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