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Transcriptional changes during crown-root development and emergence in barley (Hordeum vulgare L.). Nguyen Dieu Thu, Zavadil Kokáš Filip, Gonin Mathieu, Lavarenne Jeremy, Colin Myriam, Gantet Pascal, Bergougnoux Véronique. 2024. BMC Plant Biology, 24:438, 14 p.

Building a sorghum grain: a transcriptome roadmap targeting protein content and digestibility. P69. Sene Mamadou, Berger Angélique, Catalayud Caroline, Rios Maelle, Bonicel Joelle, Morel Marie-Hélène, Mameri Hamza, Pot David, Terrier Nancy. 2023. In : Sorghum in the 21th century: Resiliency and Sustainability in the Face of Climate Change. Book of Abstracts. CIRAD, Kansas State University, Collaborative Research on Sorghum and Millet, SorghumID, IRD, CERAAS. Montpellier : CIRAD-Kansas State University, Résumé, p. 266. Sorghum in the 21st Century, Global Sorghum Conference, Montpellier, France, 5 Juin 2023/9 Juin 2023.

Construction du grain de sorgho : une feuille de route transcriptomique ciblant la teneur et digestibilité des protéines. Sene Mamadou, Berger Angélique, Catalayud Caroline, Rios Maelle, Bonicel Joelle, Morel Marie-Hélène, Pot David, Terrier Nancy. 2023. . Nancy : INRAE, Diaporama, 1 p. Colloque Graines 2023, Versailles, France, 7 Novembre 2023/9 Novembre 2023.

Physiological and transcriptional mechanisms associated with cadmium stress tolerance in Hibiscus syriacus L. Li Xiang, Liu Lanlan, Sun Shixian, Li Yanmei, Jia Lu, Ye Shili, YU Yanxuan, Dossa Komivi, Luan Yunpeng. 2023. BMC Plant Biology, 23:286, 14 p.

Whole blood transcriptome profiles of trypanotolerant and trypanosusceptible cattle highlight a differential modulation of metabolism and immune response during infection by Trypanosoma congolense. Peylhard Moana, Berthier David, Dayo Guiguigbaza-Kossigan, Chantal Isabelle, Sylla Souleymane, Nidelet Sabine, Dubois Emeric, Martin Guillaume, Sempere Guilhem, Flori Laurence, Thevenon Sophie. 2023. Peer Community Journal, 3:e17, 33 p.

Differential gene expression in Eucalyptus clones in response to nutrient deficiency. Rossini Bruno Cesar, Bouvet Jean-Marc, Frouin Julien, Guerrini Iraê Amaral, Moreira de Freitas Talitha Casella, Ribeiro da Silva Magali, Bouillet Jean-Pierre, Laclau Jean-Paul, Marino Celso Luis. 2022. Tree Genetics and Genomes, 18:14, 17 p.

Dual transcriptome of cattle and Trypanosoma congolense highlights host*parasite interactions and modulation of host genes involved in immuno-metabolism. Thevenon Sophie, Dayo Guiguigbaza-Kossigan, Chantal Isabelle, Peylhard Moana, Sempere Guilhem, Flori Laurence, Minet Cécile, Some Fabrice, Eloiflin Roger-Junior, Berthier David. 2022. . Institut Pasteur. Paris : Institut Pasteur, Résumé, 1 p. Future of Parasitology 2022, Paris, France, 17 Octobre 2022/19 Octobre 2022.

Multi-scale comparative transcriptome analysis reveals key genes and metabolic reprogramming processes associated with oil palm fruit abscission. Fooyontphanich Kim, Morcillo Fabienne, Joët Thierry, Dussert Stéphane, Serret Julien, Collin Myriam, Amblard Philippe, Tangphatsornruang Sithichoke, Roongsattham Peerapat, Jantasuriyarat Chatchawan, Verdeil Jean-Luc, Tranbarger Timothy John. 2021. BMC Plant Biology, 21:92, 18 p.

A non-shedding fruit Elaeis oleifera palm reveals perturbations to hormone signaling, ROS homeostasis, and hemicellulose metabolism. Morcillo Fabienne, Serret Julien, Beckers Antoine, Collin Myriam, Tisne Sébastien, George Simon, Poveda Roberto, Louise Claude, Tranbarger Timothy John. 2021. Genes, 12 (11), n.spéc. Genetic Basis and Physiology of Fruit Ripening and Abscission:1724, 18 p.

Evolutionarily conserved plant genes responsive to root-knot nematodes identified by comparative genomics. Zotta Mota Ana, Fernandez Diana, Arraes Fabricio B.M., Petitot Anne-Sophie, Paes de Melo Bruno, Lisei de Sa Maria E., Grynberg Priscila, Passos Saraiva Mario A., Messenberg Guimaraes Patricia, Brasileiro Ana Christina Miranda, Albuquerque Erika Valeria Saliba, Danchin Etienne G. J., Grossi-de-Sa Maria Fatima. 2020. Molecular Genetics and Genomics, 295 (4) : 1063-1078.

Transcriptional regulation of sorghum stem composition: Key players identified through co-expression gene network and comparative genomics analyses. Hennet Lauriane, Berger Angélique, Trabanco Noemi, Ricciuti Emeline, Dufayard Jean François, Bocs Stéphanie, Bastianelli Denis, Bonnal Laurent, Roques Sandrine, Rossini Laura, Luquet Delphine, Terrier Nancy, Pot David. 2020. Frontiers in Plant Science, 11:224, 29 p.

Distinct leaf transcriptomic response of water deficient Eucalyptus grandis submitted to potassium and sodium fertilization. Favreau Bénédicte, Denis Marie, Ployet Raphael, Mounet Fabien, Peireira da Silva Hana, Franceschini Livia, Laclau Jean-Paul, Labate Carlos Alberto, Carrer Helaine. 2019. PloS One, 14 (6):e0218528, 30 p.

Seed comparative genomics in three coffee species identify desiccation tolerance mechanisms in intermediate seeds. Stavrinides Anna K., Dussert Stéphane, Combes Marie-Christine, Fock-Bastide Isabelle, Severac Dany, Minier Jérôme, Bastos-Siqueira Aldecinei, Demolombe Vincent, Hem Sonia, Lashermes Philippe, Joët Thierry. 2019. Journal of Experimental Botany, 71 (4) : 1418-1433.

Comparative transcriptome profiling of virulent and attenuated Ehrlichia ruminantium strains highlighted strong regulation of map1- and metabolism related genes. Pruneau Ludovic, Lebrigand Kevin, Mari Bernard, Lefrançois Thierry, Meyer Damien, Vachiéry Nathalie. 2018. Frontiers in Cellular and Infection Microbiology, 8:153, 16 p.

From phene to gene: how crop physiology is crucial to the discovery of reliable genetic bases of complex traits. Lafarge Tanguy, De Raissac Marcel, De Lima I., De Castro A., Favreau Bénédicte, Ahmadi Nourollah. 2018. . Piura : FLAR-CIAT, 1 poster Conferencia international de arroz para america latina y el caribe : "Alianzas para la sostenibilidad de la producción arrocera”. 13, Piura, Pérou, 15 Mai 2018/18 Mai 2018.

Genetic study of topping-induced cotton (Gossypium hirsutum L.) plant defense reactions, combining: Bioinformatics, VOC capture and genic expression. Villamar Torres Ronald. 2018. Montpellier : Université de Montpellier, 214 p. Thèse de doctorat : Biologie, interactions, diversité adaptative des plantes : Université de Montpellier

Integrative analysis of the late maturation programme and desiccation tolerance mechanisms in intermediate coffee seeds. Dussert Stéphane, Serret Julien, Bastos-Siqueira Aldecinei, Morcillo Fabienne, Dechamp Eveline, Rofidal Valérie, Lashermes Philippe, Etienne Hervé, Joët Thierry. 2018. Journal of Experimental Botany, 69 (7) : 1583-1597.

Phytophthora megakarya and Phytophthora palmivora, closely related causal agents of cacao black pod rot, underwent increases in genome sizes and gene numbers by different mechanisms. Ali Shahin, Shao Jonathan, Lary David J., Kronmiller Brent A., Shen Danyu, Strem Mary, Amoako-Attah Ishmael, Yaw Akrofi Andrew, Begoude Dider, Ten Hoopen Gerben Martijn, Coulibaly Klotioloma, Kébé Boubacar Ismaël, Melnick Rachel L., Guiltinan Mark J., Tyler Brett, Meinhardt Lyndel W., Bailey Bryan. 2017. Genome Biology and Evolution, 9 (3) : 536-557.

The rubber tree genome reveals new insights into rubber production and species adaptation. Tang Chaorong, Yang Meng, Fang Yongjun, Luo Yingfeng, Gao Shenghan, Xiao Xiaohu, An Zewei, Zhou Binhui, Zhang Bing, Tan Xinyu, Yeang Hoong Yeet, Qin Yunxia, Yang Jianghua, Lin Qiang, Mei Hailiang, Montoro Pascal, Long Xiangyu, Qi Jiyan, Hua Yuwei, He Zilong, Sun Min, Li Wenjie, Zeng Xia, Cheng Han, Liu Ying, Yang Jin, Tian Weimin, Zhuang Nansheng, Zeng Rizhong, Li Dejun, He Peng, Li Zhe, Zou Zhi, Li Shuangli, Li Chenji, Wang Jixiang, Wei Dong, Lai Chao-Qiang, Luo Wei, Yu Jun, Hu Songnian, Huang Huasun. 2016. Nature Plants, 10 p.

Draft genome sequences of two Xanthomonas vesicatoria strains from the Balkan peninsula. Vancheva Taca, Bogatzevska Nevena, Moncheva Penka, Lefeuvre Pierre, Koebnik Ralf. 2015. Genome Announcements, 3 (1):e01558-14, 2 p.

Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome. Roux Brice, Bolot Stéphanie, Guy Endrick, Denancé Nicolas, Lautier Martine, Jardinaud Marie-Françoise, Fischer-Le-Caux Marion, Portier Perrine, Jacques Marie Agnès, Gagnevin Lionel, Pruvost Olivier, Lauber Emmanuelle, Arlat Mathieu, Carrère Sébastien, Koebnik Ralf, Noel Laurent D.. 2015. BMC Genomics, 16 (975), 19 p.