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The Generation Challenge Programme platform : Semantic standards and workbench for crop science

Bruskiewich Richard, Senger Martin, Davenport Guy, Ruiz Manuel, Rouard Mathieu, Hazekamp Tom, Takeya Masaru, Doi Koji, Satoh Kouji, Costa Marcos, Simon Reinhard, Balaji Jayashree, Akintunde Akinnola, Mauleon Ramil P., Wanchana Samart, Shah Trushar, Anacleto Mylah, Portugal Arllet, Jun Ulat Victor, Thongjuea Supat, Braak Kyle, Ritter Sebastian, Dereeper Alexis. 2008. The Generation Challenge Programme platform : Semantic standards and workbench for crop science. International Journal of Plant Genomics, 2008, 6 p.

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Abstract : The Generation Challenge programme (GCP) is a global crop research consortium directed toward crop improvement through the application of comparative biology and genetic resources characterization to plant breeding. A key consortium research activity is the development of a GCP crop bioinformatics platform to support GCP research. This platform includes the following: (i) shared, public platform-independent domain models, ontology, and data formats to enable interoperability of data and analysis flows within the platform; (ii) web service and registry technologies to identify, share, and integrate information across diverse, globally dispersed data sources, as well as to access high-performance computational (HPC) facilities for computationally intensive, high-throughput analyses of project data; (iii) platform-specific middleware reference implementations of the domain model integrating a suite of public (largely open-access/-source) databases and software tools into a workbench to facilitate biodiversity analysis, comparative analysis of crop genomic data, and plant breeding decision making. (Résumé d'auteur)

Mots-clés Agrovoc : Amélioration des plantes, Ressource génétique végétale, Système d'information, Application des ordinateurs, Projet de recherche, Banque de données

Classification Agris : F30 - Plant genetics and breeding
C30 - Documentation and information

Champ stratégique Cirad : Axe 1 (2005-2013) - Intensification écologique

Auteurs et affiliations

  • Bruskiewich Richard, IRRI (PHL)
  • Senger Martin, IRRI (PHL)
  • Davenport Guy, CIMMYT (MEX)
  • Ruiz Manuel, CIRAD-BIOS-UMR DAP (FRA) ORCID: 0000-0001-8153-276X
  • Rouard Mathieu, Bioversity International (ITA)
  • Hazekamp Tom, IPGRI (ITA)
  • Takeya Masaru, NIAS (JPN)
  • Doi Koji, NIAS (JPN)
  • Satoh Kouji, NIAS (JPN)
  • Costa Marcos, EMBRAPA (BRA)
  • Simon Reinhard, CIP (PER)
  • Balaji Jayashree, ICRISAT (IND)
  • Akintunde Akinnola, ICARDA (SYR)
  • Mauleon Ramil P., IRRI (PHL)
  • Wanchana Samart, IRRI (PHL)
  • Shah Trushar, CIMMYT (MEX)
  • Anacleto Mylah, IRRI (PHL)
  • Portugal Arllet, IRRI (PHL)
  • Jun Ulat Victor, IRRI (PHL)
  • Thongjuea Supat, IRRI (PHL)
  • Braak Kyle, CIMMYT (MEX)
  • Ritter Sebastian, CIMMYT (MEX)
  • Dereeper Alexis, CNRS (FRA)

Autres liens de la publication

Source : Cirad - Agritrop (https://agritrop.cirad.fr/546501/)

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