Parcourir par Auteur Cirad

Continent-wide genomic analysis of the African buffalo (Syncerus caffer). Talenti Andrea, Wilkinson Toby, Cook Elizabeth A., Hemmink Johanneke D., Paxton Edith A., Mutinda Matthew, Ngulu Stephen D., Jayaraman Siddharth, Bishop Richard P., Obara Isaiah, Hourlier Thibaut, Garcia Giron Carlos, Martin Fergal J., Labuschagne Michel, Atimnedi Patrick, Nanteza Anne, Keyyu Julius, Mramba Furaha, Caron Alexandre, Cornelis Daniel, Chardonnet Philippe, Fyumagwa Robert, Lembo Tiziana, Auty Harriet K., Michaux Johan, Smitz Nathalie, Toye Philip, Robert Christelle, Prendergast James G.D., Morrison Liam. 2024. Communications Biology, 7:792, 14 p.

Taxonomic status of the African buffalo. Michaux Johan, Smitz Nathalie, Van Hooft Pim. 2023. In : Ecology and management of the African buffalo. Caron Alexandre (ed.), Cornélis Daniel (ed.), Chardonnet Philippe (ed.), Prins Herbert H.T. (ed.). Cambridge : Cambridge University Press, 49-65. (Ecology, Biodiversity and Conservation) ISBN 978-1-316-51874-8

The prevalence of rodent-borne zoonotic pathogens in the South Gobi desert region of Mongolia. Esson Carol, Samelius Gustaf, Strand Tanja M., Lundkvist Ake, Michaux Johan, Rasback Therese, Wahab Tara, Mijiddorj Tserennadmid Nadia, Berger Lee, Skerratt Lee F., Low Matthew. 2023. Infection Ecology and Epidemiology, 13 (1):2270258, 11 p.

Biologie de la reproduction des Marcusenius (M. monteiri, M. stanleyanus, M. schilthuisiae et M. macrolepidotus) du Pool Malebo, fleuve Congo, Kinshasa. Ntumba Mabedi Jean Métis, Mbadu Zebe Victorine, Michaux Johan, Micha Jean-Claude. 2022. International Journal of Biological and Chemical Sciences, 16 (2) : 564-580.

Characterisation of wildlife-livestock interfaces: the need for interdisciplinary approaches and a dedicated thematic field. Caron Alexandre, Barasona José Angel, Miguel Eve, Michaux Johan, De Garine-Wichatitsky Michel. 2021. In : Diseases at the wildlife - Livestock interface: research and perspectives in a changing world. Vicente Joaquín (ed.), Vercauteren Kurt C. (ed.), Gortázar Christian (ed.). Cham : Springer, 339-367. (Wildlife Research Monographs, 3, 3) ISBN 978-3-030-65364-4

Food for everyone: Differential feeding habits of cryptic bat species inferred from DNA metabarcoding. Andriollo Tommy, Michaux Johan, Ruedi Manuel. 2021. Molecular Ecology, 30 (18) : 4584-4600.

Free-living, psychrotrophic bacteria of the Genus Psychrobacter are descendants of pathobionts. Welter Daphne K., Ruaud Albane, Henseler Zachariah M., De Jong Hannah N., Van Coeverden de Groot Peter, Michaux Johan, Gormezano Linda, Waters Jillian L., Youngblut Nicholas D., Ley Ruth E.. 2021. mSystems, 6 (2), 20 p.

Long-term stress level in a small mammal species undergoing range expansion. André Adrien, Michaux Johan, Gaitan Jorge, Millien Virginie. 2021. Mammalia, 85 (4) : 296-305.

New insights on polar bear (Ursus maritimus) diet from faeces based on next-generation sequencing technologies. Michaux Johan, Dyck Markus, Boag Peter, Lougheed Stephen, Van Coeverden de Groot Peter. 2021. Artic, 74 (1) : 87-99.

Revisiting the Pneumocystis host specificity paradigm and transmission ecology in wild Southeast Asian rodents. Latinne Alice, Chen Hsuan-Wien, Kuo Chi-Chien, Lorica Renee, Singleton Grant, Stuart Alex, Malbas Fedelino F., Demanche Christine, Chabé Magali, Michaux Johan, Morand Serge. 2021. Infection, Genetics and Evolution, 93:104978, 13 p.

Current genetic admixture between relictual populations might enhance the recovery of an elusive carnivore. Pigneur Lise-Marie, Caublot Gaëlle, Fournier-Chambrillon Christine, Fournier Pascal, Giralda-Carrera Gloria, Grémillet Xavier, Le Roux Bruno, Marc Daniel, Simonnet Franck, Smitz Nathalie, Sourp Eric, Steinmetz Julien, Urra-Maya Fermin, Michaux Johan. 2019. Conservation Genetics, 20 (5) : 1133-1148.

Genetic structure of a European forest species, the edible dormouse (Glis glis): A consequence of past anthropogenic forest fragmentation? Michaux Johan, Hürner H., Krystufek B., Sarà M., Ribas A., Ruch T., Vekhnik V., Renaud S.. 2019. Biological Journal of the Linnean Society, 126 (4) : 836-851.

Next-generation sequencing on insectivorous bat guano : An accurate tool to identify arthropod viruses of potential agricultural concern. Bourgarel Mathieu, Noel Valérie, Pfukenyi Davies Mubika, Michaux Johan, André Adrien, Becquer Thierry, Cerqueira Frédérique, Barrachina Célia, Boué Vanina, Talignani Loïc, Matope Gift, Missé Dorothée, Morand Serge, Liégeois Florian. 2019. Viruses, 11:1102, 14 p.

The menu varies with metabarcoding practices: A case study with the bat Plecotus auritus. Andriollo Tommy, Gillet François, Michaux Johan, Ruedi Manuel. 2019. PloS One, 14 (7):e0219135, 17 p.

Evolutionary journey of the retroviral restriction gene Fv1. Young George R., Yap Melvyn W., Michaux Johan, Steppan Scott J., Stoye Jonathan P.. 2018. Proceedings of the National Academy of Sciences of the United States of America, 115 (40) : 10130-10135.

A genome-wide data assessment of the African lion (Panthera leo) population genetic structure and diversity in Tanzania. Smitz Nathalie, Jouvenet Olivia, Ambwene Ligate Frederick, Crosmary William-George, Ikanda Dennis, Chardonnet Philippe, Fusari Alessandro, Meganck Kenny, Gillet François, Melletti Mario, Michaux Johan. 2018. PloS One, 13 (11):e0205395, 24 p.

Comparison of diet and prey selectivity of the Pyrenean desman and the Eurasian water shrew using next-generation sequencing methods. Biffi Marjorie, Laffaille Pascal, Jabiol Jérémy, André Adrien, Gillet François, Lamothe Sylvain, Michaux Johan, Buisson Laëtitia. 2017. Mammalian Biology, 87 : 176-184.

Evidence of fine-scale genetic structure for the endangered Pyrenean desman (Galemys pyrenaicus) in the French Pyrenees. Gillet François, Cabria Garrido M.T., Blanc Frédéric, Fournier-Chambrillon Christine, Némoz Mélanie, Sourp Eric, Vial-Novella C., Zardoya Rafael, Aulagnier Stéphane, Michaux Johan. 2017. Journal of Mammalogy, 98 (2) : 523-532.

Liver microbiome of Peromyscus leucopus, a key reservoir host species for emerging infectious diseases in North America. André A., Mouton Alice, Millien Virginie, Michaux Johan. 2017. Infection, Genetics and Evolution, 52 : 10-18.

Genetic variations of Turkish bank vole, Myodes glareolus (Mammalia: Rodentia) inferred from mtDNA. Colak Reyhan, Olgun Karacan Gül, Kandemir Irfan, Colak Ercüment, Kankiliç Teoman, Yigit Nuri, Michaux Johan. 2016. Mitochondrial DNA. Part A, 27 (6) : 4372-4379.

Genome-wide single nucleotide polymorphism (SNP) identification and characterization in a non-model organism, the African buffalo (Syncerus caffer), using next generation sequencing. Smitz Nathalie, Van Hooft Pim, Heller Rasmus, Cornélis Daniel, Chardonnet Philippe, Kraus R., Greyling B.J., Crooijmans Richard, Groenen M., Michaux Johan. 2016. Mammalian Biology, 81 (6) : 595-603.

Molecular phylogeny of Southeast Asian arboreal murine rodents. Pagès Marie, Fabre Pierre-Henri, Chaval Yannick, Mortelliti Alessio, Nicolas Violaine, Wells Konstans, Michaux Johan, Lazzari Vincent. 2016. Zoologica Scripta, 45 (4) : 349-364.

Alphacoronaviruses detected in French bats are phylogeographically linked to coronaviruses of European bats. Goffard Anne, Demanche Christine, Arthur Laurent, Pinçon Claire, Michaux Johan, Dubuisson Jean. 2015. Viruses, 7 (12) : 6279-6290.

Endogenous murine leukemia retroviral variation across wild European and inbred strains of house mouse. Hartmann Stefanie, Hasenkamp Natascha, Mayer Jens, Michaux Johan, Morand Serge, Mazzoni Camila J., Roca Alfred L., Greenwood Alex. 2015. BMC Genomics, 16 (613), 13 p.

Influence of past and future climate changes on the distribution of three Southeast Asian murine rodents. Latinne Alice, Meynard Christine N., Herbreteau Vincent, Waengsothorn Surachit, Morand Serge, Michaux Johan. 2015. Journal of Biogeography, 42 (9) : 1714-1726.

New insights on African buffalo genetics. Smitz Nathalie, Cornélis Daniel, Chardonnet Philippe, Caron Alexandre, De Garine-Wichatitsky Michel, Jori Ferran, Van Hooft Pim, Heller Rasmus, Michaux Johan. 2015. Gnusletter (1), « n.spéc. » African Buffalo, Résumé : 19-20. Symposium on African Buffalo. 1, Paris, France, 5 Novembre 2014/6 Novembre 2014.

Out of Himalaya: The impact of past Asian environmental changes on the evolutionary and biogeographical history of Dipodoidea (Rodentia). Pisano Julie, Condamine Fabien L., Lebedev Vladimir, Bannikova Anna, Quéré Jean-Pierre, Shenbrot Georgy I., Pagès Marie, Michaux Johan. 2015. Journal of Biogeography, 42 (5) : 856-870.

Patterns of genetic variation in the endangered European mink (Mustela lutreola L., 1761). Cabria Maria Teresa, Gonzalez Elena G., Gomez-Moliner Benjamin J., Michaux Johan, Skumatov Dimitry, Kranz Andreas, Fournier Pascal, Palazon Santiago, Zardoya Rafael. 2015. BMC Evolutionary Biology, 15 (141), 15 p.

Progress on research on rodents and rodent-borne zoonoses in South-east Asia. Blasdell Kim R., Bordes Frédéric, Chaisiri Kittipong, Chaval Yannick, Claude Julien, Cosson Jean François, Latinne Alice, Michaux Johan, Morand Serge, Pagès Marie, Tran Annelise. 2015. Wildlife Research, 42 (2) : 98-107.

A new method to identify the endangered Pyrenean desman (Galemys pyrenaicus) and to study its diet, using next generation sequencing from faeces. Gillet François, Tiouchichine Marie-Laure, Galan Maxime, Blanc Frédéric, Némoz Mélanie, Aulagnier Stéphane, Michaux Johan. 2015. Mammalian Biology, 80 (6) : 505-509.

Genetic structure of the African buffalo (Syncerus caffer) at continental and population scales: an evolutionary and conservation approach. Smitz Nathalie, Cornélis Daniel, Chardonnet Philippe, Randi Ettore, Michaux Johan. 2014. In : Ecology, evolution and behaviour of wild cattle: implications for conservation. Melletti Mario (ed.), Burton James (ed.). Cambridge : Cambridge University Press, 410-430. ISBN 978-1-107-03664-2

Hybridization capture using short PCR products enriches small genomes by capturing flanking sequences (CapFlank). Tsangaras Kyriakos, Wales Nathan, Sicheritz-Pontén Thomas, Rasmussen Simon, Michaux Johan, Ishida Yasuko, Morand Serge, Kampmann Marie-Louise, Gilbert M. Thomas P., Greenwood Alex. 2014. PloS One, 9 (10):e109101, 10 p.

Negative purifying selection drives prion and doppel protein evolution. Tsangaras Kyriakos, Kolokotronis Sergios-Orestis, Ulrich Rainer G., Morand Serge, Michaux Johan, Greenwood Alex. 2014. Journal of Molecular Evolution, 79 (1-2) : 12-20.