Parcourir par Auteur Cirad

Synergizing digital, biological, and participatory sciences for global plant species identification: Enabling access to a worldwide identification service. Bonnet Pierre, Affouard Antoine, Lombardo Jean-Christophe, Chouet Mathias, Gresse Hugo, Hequet Vanessa, Palard Rémi, Fromholtz Maxime, Espitalier Vincent, Goeau Hervé, Deneu Benjamin, Botella Christophe, Estopinan Joaquim, Leblanc César, Servajean Maximilien, Munoz François, Joly Alexis. 2023. Biodiversity Information Science and Standards, 7:e112545, 3 p.

Convolutional neural networks improve species distribution modelling by capturing the spatial structure of the environment. Deneu Benjamin, Servajean Maximilien, Bonnet Pierre, Botella Christophe, Munoz François, Joly Alexis. 2021. PLoS Computational Biology, 17 (4):e1008856, 21 p.

Jointly estimating spatial sampling effort and habitat suitability for multiple species from opportunistic presence-only data. Botella Christophe, Joly Alexis, Bonnet Pierre, Munoz François, Monestiez Pascal. 2021. Methods in Ecology and Evolution, 12 (5) : 933-945.

Bias in presence-only niche models related to sampling effort and species niches: Lessons for background point selection. Botella Christophe, Joly Alexis, Monestiez Pascal, Bonnet Pierre, Munoz François. 2020. PloS One, 15 (5):e0232078, 18 p.

Species distribution modeling based on the automated identification of citizen observations. Botella Christophe, Joly Alexis, Bonnet Pierre, Monestiez Pascal, Munoz François. 2018. Applications in Plant Sciences, 6 (2), n.spéc. Green Digitization: Online Botanical Collections Data Answering Real-World Questions:e1029, 11 p.

Life Science Workflow Services (LifeSWS): motivations and architecture. Akbarinia Reza, Botella Christophe, Joly Alexis, Masseglia Florent, Mattoso Marta, Ogasawara Eduardo, De Oliveira Daniel, Pacitti Esther, Porto Fabio, Pradal Christophe, Shasha Dennis, Valduriez Patrick. 2023. In : Transactions on large-scale data-and knowledge-centered systems LV. Abdelkader Hameurlain (ed.), Min Tjoa A. (ed.). Berlin : Springer, 1-24. (Lecture Notes in Computer Science, 14280) ISBN 978-3-662-68099-5

A deep learning approach to species distribution modelling. Botella Christophe, Joly Alexis, Bonnet Pierre, Monestiez Pascal, Munoz François. 2018. In : Multimedia tools and applications for environmental and biodiversity informatics. Joly Alexis (ed.), Vrochidis Stefanos (ed.), Karatzas Kostas (ed.), Karppinen Ari (ed.), Bonnet Pierre (ed.). Cham : Springer, 169-199. (Multimedia Systems and Applications) ISBN 978-3-319-76444-3

LifeCLEF 2023 teaser: Species identification and prediction challenges. Joly Alexis, Goeau Hervé, Kahl Stefan, Picek Lukáš, Botella Christophe, Marcos Diego, Sulc Milan, Hrúz Marek, Lorieul Titouan, Moussi Sara Si, Servajean Maximilien, Kellenberger Benjamin, Cole Elijah, Durso Andrew, Glotin Hervé, Planqué Robert, Vellinga Willem-Pier, Klinck Holger, Denton Tom, Eggel Ivan, Bonnet Pierre, Müller Henning. 2023. In : Advances in Information Retrieval:45th European Conference on Information Retrieval, ECIR 2023, Dublin, Ireland, April 2–6, 2023, Proceedings, Part III. Kamps Jaap (ed.), Goeuriot Lorraine (ed.), Crestani Fabio (ed.), Maistro Maria (ed.), Joho Hideo (ed.), Davis Brian (ed.), Gurrin Cathal (ed.), Kruschwitz Udo (ed.), Caputo Annalina (ed.). Cham : Springer, 568-576. (Lecture Notes in Computer Science, 13982, 13982) ISBN 978-3-031-28240-9 European Conference on Information Retrieval (ECIR 2023). 45, Dublin, Irlande, 2 Avril 2023/6 Avril 2023.

Overview of GeoLifeCLEF 2023: Species composition prediction with high spatial resolution at continental scale using remote sensing. Botella Christophe, Deneu Benjamin, Marcos Gonzalez Diego, Servajean Maximilien, Larcher Théo, Leblanc César, Estopinan Joaquim, Bonnet Pierre, Joly Alexis. 2023. In : Working notes of the Conference and Labs of the Evaluation Forum (CLEF 2023). Aliannejadi Mohammad (ed.), Faggiolo Guglielmo (ed.), Ferro Nicola (ed.), Vlachos Michalis (ed.). Aachen : CEUR-WS, 1954-1971. (CEUR Workshop Proceedings, 3497, 3497) Conference and Labs of the Evaluation Forum (CLEF-WN 2023). 24, Thessaloniki, Grèce, 18 Septembre 2023/21 Septembre 2023.

Overview of LifeCLEF 2023: Evaluation of AI models for the identification and prediction of birds, plants, snakes and fungi. Joly Alexis, Botella Christophe, Picek Lukáš, Kahl Stefan, Goeau Hervé, Deneu Benjamin, Marcos Diego, Estopinan Joaquim, Leblanc César, Larcher Théo, Chamidullin Rail, Sulc Milan, Hrúz Marek, Servajean Maximilien, Glotin Hervé, Planqué Robert, Vellinga Willem-Pier, Klinck Holger, Denton Tom, Eggel Ivan, Bonnet Pierre, Müller Henning. 2023. In : Experimental IR meets multilinguality, multimodality, and interaction: 14th International Conference of the CLEF Association, CLEF 2023, Thessaloniki, Greece, September 18–21, 2023, Proceedings. Arampatzis Avi (ed.), Kanoulas Evangelos (ed.), Tsikrika Theodora (ed.), Vrochidis Stefanos (ed.), Giachanou Anastasia (ed.), Li Dan (ed.), Aliannejadi Mohammad (ed.), Vlachos Michalis (ed.), Faggioli Guglielmo (ed.), Ferro Nicola (ed.). Cham : Springer, 416-439. (Lecture Notes in Computer Science, 14163, 14163) ISBN 978-3-031-42447-2 International Conference of the Cross-Language Evalution Forum for European Languages. 14, Thessaloniki, Grèce, 18 Septembre 2023/21 Septembre 2023.

LifeCLEF 2020 teaser: Biodiversity identification and prediction challenges. Joly Alexis, Goeau Hervé, Kahl Stefan, Botella Christophe, Ruiz de Castañeda Rafael, Glotin Hervé, Cole Elijah, Champ Julien, Deneu Benjamin, Servajean Maximilien, Lorieul Titouan, Vellinga Willem-Pier, Stöter Fabian-Robert, Durso Andrew, Bonnet Pierre, Müller Henning. 2020. In : Advances in information retrieval: 42nd European Conference on IR Research, ECIR 2020, Lisbon, Portugal, April 14–17, 2020, Proceedings, Part II. Jose Joemon M. (ed.), Yilmaz Emine (ed.), Magalhães João (ed.), Castells Pablo (ed.), Ferro Nicola (ed.), Silva Mário J. (ed.), Martins Flávio (ed.). Cham : Springer, 542-549. (Lecture Notes in Computer Science, 12036, 12036) ISBN 978-3-030-45441-8 European Conference on IR Research (ECIR 2020). 42, Lisbonne, Portugal, 14 Avril 2020/17 Avril 2020.

Overview of LifeCLEF 2020: A system-oriented evaluation of automated species identification and species distribution prediction. Joly Alexis, Goeau Hervé, Kahl Stefan, Deneu Benjamin, Servajean Maximilien, Cole Elijah, Picek Lukáš, Ruiz de Castañeda Rafael, Bolon Isabelle, Durso Andrew, Lorieul Titouan, Botella Christophe, Glotin Hervé, Champ Julien, Eggel Ivan, Vellinga Willem-Pier, Bonnet Pierre, Müller Henning. 2020. In : Experimental IR meets multilinguality, multimodality, and interaction: 11th International Conference of the CLEF Association, CLEF 2020, Thessaloniki, Greece, September 22–25, 2020, Proceedings. Arampatzis Avi (ed.), Kanoulas Evangelos (ed.), Tsikrika Theodora (ed.), Vrochidis Stefanos (ed.), et Al.. Cham : Springer, 342-363. (Lecture Notes in Computer Science, 12260) ISBN 978-3-030-58218-0 International Conference of the Cross-Language Evaluation Forum for European Languages, Thessaloniki, Grèce, 22 Septembre 2020/25 Septembre 2020.

Overview of LifeCLEF location-based species prediction task 2020 (GeoLifeCLEF). Deneu Benjamin, Lorieul Titouan, Cole Elijah, Servajean Maximilien, Botella Christophe, Bonnet Pierre, Joly Alexis. 2020. In : Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum. Cappellato Linda (ed.), Eickhoff Carsten (ed.), Ferro Nicola (ed.), Névéol Aurélie (ed.). Aachen : CEUR-WS, 13 p. (CEUR Workshop Proceedings, 2696) Conference and Labs of the Evaluation Forum (CLEF 2020), Thessaloniki, Grèce, 22 Septembre 2020/25 Septembre 2020.

LifeCLEF 2019: Biodiversity identification and prediction challenges. Joly Alexis, Goeau Hervé, Botella Christophe, Kahl Stefan, Poupard Pascal, Servajean Maximilien, Glotin Hervé, Bonnet Pierre, Vellinga Willem-Pier, Planqué Robert, Schlüter Jan, Stöter Fabian-Robert, Müller Henning. 2019. In : Advances in information retrieval: 41st European Conference on IR Research, ECIR 2019, Cologne, Germany, April 14–18, 2019, Proceedings, Part II. Azzopardi Leif (ed.), Stein Benno (ed.), Fuhr Nobert (ed.), Mayr Philipp (ed.), Hauff Claudia (ed.), Hiemstra Djoerd (ed.). Cham : Springer, 275-282. (Lecture Notes in Computer Science, 11438, 11438) ISBN 978-3-030-15718-0 European Conference on IR Research (ECIR 2019). 41, Cologne, Allemagne, 14 Septembre 2019/18 Septembre 2019.

Overview of GeoLifeCLEF 2019: Plant species prediction using environment and animal occurrences. Botella Christophe, Servajean Maximilien, Bonnet Pierre, Joly Alexis. 2019. In : Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum. Cappellato Linda (ed.), Ferro Nicola (ed.), Losada David E. (ed.), Müller Henning (ed.). Aachen : CEUR-WS, 18 p. (CEUR Workshop Proceedings, 2380) Conference and Labs of the Evaluation Forum (CLEF 2019), Lugano, Suisse, 9 Septembre 2019/12 Septembre 2019.

Overview of LifeCLEF 2019: Identification of Amazonian plants, south and north American birds, and niche prediction. Joly Alexis, Goeau Hervé, Botella Christophe, Kahl Stefan, Servajean Maximilien, Glotin Hervé, Bonnet Pierre, Planqué Robert, Stöter Fabian-Robert, Vellinga Willem-Pier, Müller Henning. 2019. In : Experimental IR meets multilinguality, multimodality, and interaction: 10th International Conference of the CLEF Association, CLEF 2019, Lugano, Switzerland, September 9–12, 2019, Proceedings. Crestani Fabio (ed.), Braschler Martin (ed.), Savoy Jacques (ed.), Rauber Andreas (ed.), Müller Henning (ed.), Losada David E. (ed.), Bürki Gundula Heinatz (ed.), Cappellato Linda (ed.), Ferro Nicola (ed.). Cham : Springer, 387-401. (Lecture Notes in Computer Science, 11696) ISBN 978-3-030-28576-0 International Conference of the CLEF Association (CLEF 2019). 10, Lugano, Suisse, 9 Septembre 2019/12 Septembre 2019.

A new multi-species method to correct for sampling bias in presence only niche models, and its application to Pl@ntNet citizen science data in France. Botella Christophe, Joly Alexis, Similar Find, Bonnet Pierre, Munoz François, Monestiez Pascal. 2019. In : Session: COS 67 Modeling I. Tomás León (ed.). ESA. Louisville : Ecological Society of America, Résumé, 1 p. Annual Meeting of the Ecological Society of America (ESA 2019), Louisville, États-Unis, 11 Août 2019/16 Août 2019.

Overview of LifeCLEF 2018: A large-scale evaluation of species identification and recommendation algorithms in the era of AI. Joly Alexis, Goeau Hervé, Botella Christophe, Glotin Hervé, Bonnet Pierre, Vellinga Willem-Pier, Planqué Robert, Müller Henning. 2018. In : Experimental IR meets multilinguality, multimodality, and interaction. Bellot Patrice (ed.), Trabelsi Chiraz (ed.), Mothe Josiane (ed.), Murtagh Fionn (ed.), Nie Jian Yun (ed.), Soulier Laure (ed.), San Juan Eric (ed.), Cappellato Linda (ed.), Ferro Nicola (ed.). Cham : Springer, 247-266. (Lecture Notes in Computer Science, 11018) ISBN 978-3-319-98931-0 International Conference of the CLEF Association (CLEF 2018). 9, Avignon, France, 10 Septembre 2018/14 Septembre 2018.