Résultats pour Auteur : "Klopp, Christophe"

A chromosome-level, haplotype-phased genome assembly for Vanilla planifolia highlights that partial endoreplication challenges accurate whole genome assembly. Piet Quentin, Droc Gaëtan, Marande William, Sarah Gautier, Bocs Stéphanie, Klopp Christophe, Bourge Mickael, Siljak-Yakovlev Sonja, Bouchez Olivier, Lopez-Roques Céline, Lepers-Andrzejewski Sandra, Bourgois Laurent, Zucca Joseph, Dron Michel, Besse Pascale, Grisoni Michel, Jourda Cyril, Charron Carine. 2022. Plant Communications, 3:100330, 15 p.

A mutant-based analysis of the establishment of Nod-independent symbiosis in the legume Aeschynomene evenia. Quilbé Johan, Nouwen Nico, Pervent Marjorie, Guyonnet Rémi, Cullimore julie, Gressent Frédéric, Horta Araújo Natasha, Gully Djamel, Klopp Christophe, Giraud Eric, Arrighi Jean-François. 2022. Plant Physiology, 190 (2) : 1400-1417.

Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium-legume symbiosis. Quilbé Johan, Lamy Léo, Brottier Laurent, Leleux Philippe, Fardoux Joël, Rivallan Ronan, Benichou Thomas, Guyonnet Rémi, Becana Manuel, Villar Irene, Garsmeur Olivier, Hufnagel Barbara, Delteil Amandine, Gully Djamel, Chaintreuil Clémence, Pervent Marjorie, Cartieaux Fabienne, Bourge Mickael, Valentin Nicolas, Martin Guillaume, Fontaine Loïc, Droc Gaëtan, Dereeper Alexis, Farmer Andrew, Libourel Cyril, Nouwen Nico, Gressent Frédéric, Mournet Pierre, D'Hont Angélique, Giraud Eric, Klopp Christophe, Arrighi Jean-François. 2021. Nature Communications, 12:829, 14 p.

Ten steps to get started in Genome Assembly and Annotation. Dominguez del Angel Victoria, Hjerde Erik, Sterck Lieven, Capella-Gutierrez Salvadors, Notredame Cederic, Vinnere Pettersson Olga, Amselem Joelle, Bouri Laurent, Bocs Stéphanie, Klopp Christophe, Gibrat Jean-François, Vlasova Anna, Leskosek Brane L., Soler Lucile, Binzer-Panchal Mahesh, Lantz Henrik. 2018. F1000Research, 7:148

About Ganoderma boninense in oil palm plantations of Sumatra and peninsular Malaysia: Ancient population expansion, extensive gene flow and large scale dispersion ability. Merciere Maxime, Boulord Romain, Carasco-Lacombe Catherine, Klopp Christophe, Lee Yang-Ping, Tan Joon Sheong, Syed Alwee Sharifah Shahrul Rabiah, Zaremski Alba, De Franqueville Hubert, Breton Frédéric, Camus-Kulandaivelu Létizia. 2017. Fungal Biology, 121 (6-7) : 529-540.

A gene-based map of the Nod factor-independent Aeschynomene evenia sheds new light on the evolution of nodulation and legume genomes. Chaintreuil Clémence, Rivallan Ronan, Bertioli David J., Klopp Christophe, Gouzy Jérôme, Courtois Brigitte, Leleux Philippe, Martin Guillaume, Rami Jean-François, Gully Djamel, Parrinello Hugues, Severac Dany, Patrel Delphine, Fardoux Joël, Ribière William, Boursot Marc, Cartieaux Fabienne, Czernic Pierre, Ratet Pascal, Mournet Pierre, Giraud Eric, Arrighi Jean-François. 2016. DNA Research, 23 (4) : 365-376.

High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly. Bartholomé Jérôme, Mandrou Eric, Mabiala André, Jenkins Jerry, Nabihoudine Ibouniyamine, Klopp Christophe, Schmutz Jeremy, Plomion Christophe, Gion Jean-Marc. 2015. New Phytologist, 206 (4), n.spéc. Featured papers on 'Eucalyptus genome' : 1283-1296.

Identification and development of new polymorphic microsatellite markers using genome assembly for Ganoderma boninense, causal agent of oil palm basal stem rot disease. Merciere Maxime, Laybats Anthony, Carasco-Lacombe Catherine, Tan Joon Sheong, Klopp Christophe, Durand-Gasselin Tristan, Alwee Sharifah Shahrul Rabiah Syed, Camus-Kulandaivelu Létizia, Breton Frédéric. 2015. Mycological Progress, 14 (11):103, 11 p.

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release. Lesur Isabelle, Le Provost Grégoire, Bento Pascal, Da Silva Corinne, Leplé Jean-Charles, Murat Florent, Ueno Saneyoshi, Bartholomé Jérôme, Lalanne Céline, Ehrenmann François, Noirot Céline, Burban Benoit, Léger Valérie, Amselem Joelle, Belser Caroline, Quesneville Hadi, Stierschneider Michael, Fluch Silvia, Feldhahn Lasse, Tarkka Mika, Herrmann Sylvie, Buscot François, Klopp Christophe, Kremer Antoine, Salse Jérôme, Aury Jean-Marc, Plomion Christophe. 2015. BMC Genomics, 16:112, 23 p.

Complete genome sequence of a field strain of peste des petits ruminants virus Iisolated during 2010-2014 epidemics in Senegal. Salami Habib, Croville Guillaume, Kwiatek Olivier, Mariette Jérôme, Klopp Christophe, Valière Sophie, Guerin Jean-Luc, Lo Moustapha, Thiongane Yaya, Albina Emmanuel, Libeau Geneviève. 2014. Genome Announcements, 2 (5):e00772, 2 p.

High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination. Chancerel Emilie, Lamy Jean-Baptiste, Lesur Isabelle, Noirot Céline, Klopp Christophe, Ehrenmann François, Boury Christophe, Le Provost Grégoire, Label Philippe, Lalanne Céline, Léger Valérie, Salin Franck, Gion Jean-Marc, Plomion Christophe. 2013. BMC Biology, 11 (50), 19 p.

RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus. Villar Emilie, Klopp Christophe, Noirot Céline, Novaes Evandro, Kirst Mathias, Plomion Christophe, Gion Jean-Marc. 2011. BMC Genomics, 12 (538), 18 p.

Fungal diseases affecting oil palm. Joon Sheong Tan, Yang Ping Lee, Alwee Sharifah Shahrul Rabiah Syed, Camus-Kulandaivelu Létizia, Mercière Maxime, Zaremski Alba, Breton Frédéric, Klopp Christophe. 2018. In : Achieving sustainable cultivation of oil palm. Volume 2: Diseases, pests, quality and sustainability. Rival Alain (ed.). Cambridge : Burleigh Dodds Science Publishing, 3-22. (Burleigh Dodds Series in Agricultural Science, 28) ISBN 978-1-78676-108-8

Advances in reconstructing the genome of Vanilla planifolia: Addressing partial endoreplication challenges. Piet Quentin, Droc Gaëtan, Marande William, Sarah Gautier, Bocs Stéphanie, Klopp Christophe, Bourge Mickael, Siljak-Yakovlev Sonja, Bouchez Olivier, Lopez-Roques Céline, Lepers-Andrzejewski Sandra, Dedours Amaury, Lambert Fanny, Dron Michel, Besse Pascale, Grisoni Michel, Jourda Cyril, Charron Carine. 2024. In : Book of abstracts, 5th International Vanilla Congress, 4-7 June 2024, Reunion Island, France. Cirad, Université de la Réunion. Saint-Pierre : CIRAD-Université de la Réunion, Résumé, p. 22. International Vanilla Congress (IVC 2024). 5, Saint-Pierre, Réunion, 4 Juin 2024/7 Juin 2024.

The route to the development of basal stem rot resistance in oil palm (Elaeis guineensis) via the discovery of lignin degradation process in the pathogen Ganoderma boninense. Tan Joon Sheong, Lee Yang-Ping, Sulaiman S., Camus-Kulandaivelu Létizia, Klopp Christophe, Mercière Maxime, Breton Frédéric, Durand-Gasselin Tristan, Syed Alwee Sharifah Shahrul Rabiah. 2018. In : Proceedings of the International Symposia on Tropical and Temperate Horticulture, Volume 1, Cairns, Queensland, Australia, November 20-25, 2016. Drew R. (ed.). ISHS. Louvain : ISHS, 359-370. (Acta Horticulturae, 1205) ISBN 978-94-6261-200-6 International Symposia on Tropical and Temperate Horticulture, Cairns, Australie, 20 Novembre 2016/25 Novembre 2016.

Partial endoreplication challenges whole genome assembly: the case of Vanilla planifolia (Orchidaceae). Piet Quentin, Droc Gaëtan, Marande William, Sarah Gautier, Bocs Stéphanie, Klopp Christophe, Bourge Mickael, Siljak-Yakovlev Sonja, Bouchez Olivier, Lopez-Roques Céline, Lepers-Andrzejewski Sandra, Bourgois Laurent, Zucca Joseph, Dron Michel, Besse Pascale, Grisoni Michel, Jourda Cyril, Charron Carine. 2022. In : Exploring the latest developments in omic technologies, breeding techniques and the application of ai in bioinformatics and phenotyping. The Hague : s.n., 1 poster Plant Genomics and Gene Editing Congress: Europe. 9, The Hague, Pays-Bas, 11 Avril 2022/12 Avril 2022.

The puzzling genome of Vanilla planifolia : current knowledge and applications. Piet Quentin, Droc Gaëtan, Marande William, Sarah Gautier, Bocs Stéphanie, Klopp Christophe, Bourge Mickael, Siljak-Yakovlev Sonja, Bouchez Olivier, Lopez-Roques Céline, Lepers-Andrzejewski Sandra, Dedours Amaury, Lambert Fanny, Dron Michel, Besse Pascale, Grisoni Michel, Jourda Cyril, Charron Carine. 2024. . s.l. : s.n., Résumé, 1 p. International Conference on Comparative Biology of Monocotyledons (Monocots VII). 7, San José, Costa Rica, 11 Mars 2024/15 Mars 2024.

Identification and development of new polymorphic microsatellite markers for main causal agent of oil palm basal stem rot disease using Ganoderma boninense genome assembly [W557]. Mercière Maxime, Laybats Anthony, Carasco-Lacombe Catherine, Joon Sheong Tan, Klopp Christophe. 2015. In : Plant and Animal Genomes Conference XXIII Conference, San diego, United States, San Diego, United States, January 10-14, 2015. s.l. : s.n., Résumé Plant and Animal Genome Conference. 23, San Diego, États-Unis, 10 Janvier 2015/14 Janvier 2015.

Identification and development of new polymorphic Microsatellite markers for Ganoderma boninense main causal agent of oil palm basal stem rot disease. Mercière Maxime, Laybats Anthony, Carasco-Lacombe Catherine, Tan Joon Sheong, Klopp Christophe, Durant-Gasselin Tristan, Syed Alwee Sharifah Shahrul Rabiah, Breton Frédéric, Camus-Kulandaivelu Létizia. 2014. In : 4th International Oil Palm Conference, Bali, Indonesia, 17-19 June 2014. IOPRI. Bali : IOPRI, Résumé, 7 p. International Oil Palm Conference. 4, Bali, Indonésie, 17 Juin 2014/19 Juin 2014.

Identification of laccase genes in Ganoderma boninense draft genome assembly. Camus-Kulandaivelu Létizia, Mercière Maxime, Joon Sheong Tan, Klopp Christophe, Durant-Gasselin Tristan, Syed Alwee Sharifah Shahrul Rabiah, Breton Frédéric. 2014. In : 4th International Oil Palm Conference, Bali, Indonesia, 17-19 June 2014. IOPRI. Bali : IOPRI, 7 p. International Oil Palm Conference. 4, Bali, Indonésie, 17 Juin 2014/19 Juin 2014.

A High-density linkage map for Eucalyptus urophylla and E. grandis based on 1,100 F1 progenies genotyped with 6,000 SnP markers : P0474. Bartholomé Jérôme, Mandrou Eric, Nabihoudine Ibouniyamine, Klopp Christophe, Plomion Christophe, Gion Jean-Marc. 2013. In : Plant and Animal Genome XXI conference, San Diego, USA, January 12-16 2013,. s.l. : s.n., Résumé, 1 p. Plant and Animal Genome conference. 21, San Diego, États-Unis, 12 Janvier 2013/16 Janvier 2013.