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Deeper sequencing reveals a greater diversity of transcripts in the complex sugarcane genome. Pazhany Adhini S., Perlo Virginie, Botha Frederick C., Furtado Agnelo, O'Keeffe Angela, Correr Fernando, Masouleh Ardy Kharabian, Aitken Karen S., D'Hont Angélique, Healey Adam, Grimwood Jane, Barry Kerrie W., Schmutz Jeremy, Henry Robert. 2021. In : Proceedings of International Conference on Sugarcane Research: Sugarcane for Sugar and Beyond. Palaniswami C. (ed.), Hemaprabha G. (ed.), Viswanathan R. (ed.), Karuppaiyan R. (ed.), Mohanraj K. (ed.), Mahadeva Swamy H.K. (ed.), Bakshi Ram (ed.). ICAR, SBI, Tamil Nadu Agricultural University, SSRD. Coimbatore : SSRD, 191-192. ISBN 978-93-85267-30-7 International Conference on Sugarcane Research: Sugarcane for Sugar and Beyond (CaneCon2021), Coimbatore, Inde, 19 Juin 2021/22 Juin 2021.

Leveraging multiple sequencing technologies to generate a haplotype specific assembly of sugarcane R570. [W1018]. Healey Adam, Lovell John, Garsmeur Olivier, Jenkins Jerry, Grimwood Jane, Aitken Karen S., Henry Robert, D'Hont Angélique, Schmutz Jeremy. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, 443. Plant and Animal Genome. 28, San Diego, États-Unis, 11 Janvier 2020/15 Janvier 2020.

Sequencing the transcriptome of R570 to explore the complexity of the sugarcane genome [W1019]. Kumar Pazhany Adhini Sudhindra, Perlo Virginie, Botha Frikkie, Furtado Agnelo, O'Keeffe Angela, Karabian Masouleh Ardy, Henry Robert, Aitken Karen S., D'Hont Angélique, Healey Adam, Grimwood Jane, Barry Kerrie W., Schmutz Jeremy. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, 443-444. Plant and Animal Genome. 28, San Diego, États-Unis, 11 Janvier 2020/15 Janvier 2020.

The importance of sequencing depth for a complex transcriptome [W952]. Kumar Pazhany Adhini Sudhindra, Perlo Virginie, Botha Frikkie, Furtado Agnelo, O'Keeffe Angela, Karabian Masouleh Ardy, Henry Robert, Aitken Karen S., D'Hont Angélique, Healey Adam, Grimwood Jane, Barry Kerrie W., Schmutz Jeremy. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, 417. Plant and Animal Genome. 28, San Diego, États-Unis, 11 Janvier 2020/15 Janvier 2020.

Genomic variation in 3,010 diverse accessions of Asian cultivated rice. Wang Wensheng, Mauleon Ramil P., Hu Zhiqiang, Chebotarov Dmytro, Tai Shuaishuai, Wu Zhi-Chao, Li Min, Zheng Tianqing, Fuentes Roven Rommel, Zhang Fan, Mansueto Locedie, Copetti Dario, Sanciangco Millicent, Palis Kevin Christian, Xu Jianlong, Sun Chen, Fu Binying, Zhang Hongliang, Gao Yongming, Zhao Xiuqin, Shen Fei, Cui Xiao, Yu Hong, Li Zichao, Chen Miaolin, Detras Jeffrey, Zhou Yong-Li, Zhang Xinyuan, Zhao Yue, Kudrna Dave, Wang Chunchao, Li Rui, Jia Ben, Lu Jinyuan, He Xianchang, Dong Zhaotong, Xu Jiabao, Li Yanhong, Wang Miao, Shi Jianxin, Li Jing, Zhang Dabing, Lee Seunghee, Hu Wushu, Poliakov Alexander, Dubchak Inna, Ulat Victor Jun, Borja Borja Nikki Frances, Mendoza John Robert, Ali Jauhar, Li Jing, Gao Qiang, Niu Yongchao, Yue Zhen, Naredo Ma. Elizabeth B., Talag Jayson, Wang Xueqiang, Li Jinjie, Fang Xiaodong, Yin Ye, Glaszmann Jean-Christophe, et al.. 2018. Nature, 557:7703 : 43-49.

Genomics of the origin and evolution of Citrus. Wu Guohong Albert, Terol Javier F., Ibáñez Victoria, López-García Antonio, Pérez-Román Estela, Borredá Carles, Domingo Concha, Tadeo Francisco, Carbonell-Caballero Jose, Alonso Roberto, Curk Franck, Du Dongliang, Ollitrault Patrick, Roose Mikeal L., Dopazo Joaquin, Gmitter Frederick G., Rokhsar Daniel S., Talon Manuel. 2018. Nature, 554 (7692) : 311-136.

A monoploid reference sequence for the highly complex genome of sugarcane. Garsmeur Olivier, Droc Gaëtan, Aitken Karen S., Potier Bernard, Van Sluys Marie-Anne, Hervouet Catherine, Van der Vossen Edwin, Henry Robert, Schmutz Jeremy, D'Hont Angélique. 2018. . Okinawa : ISSCT, 1 p. ISSCT joint Breeding & Germplasm and Molecular Biology Workshops, Okinawa, Japon, 22 Octobre 2018/26 Octobre 2018.

A mosaic monoploid reference sequence for the highly complex genome of sugarcane. Garsmeur Olivier, Droc Gaëtan, Antonise Rudie, Grimwood Jane, Potier Bernard, Aitken Karen S., Jenkins Jerry, Martin Guillaume, Charron Carine, Hervouet Catherine, Costet Laurent, Yahiaoui Nabila, Healey Adam, Sims David, Cherukuri Yesesri, Sreedasyam Avinash, Kilian Andrzej, Chan Agnes P., Van Sluys Marie-Anne, Swaminathan Kankshita, Town Christopher, Berges Hélène, Simmons Blake, Glaszmann Jean-Christophe, Van der Vossen Edwin, Henry Robert, Schmutz Jeremy, D'Hont Angélique. 2018. Nature Communications, 9:2638, 10 p.

A new evolutionary framework for the genus Citrus: Its origin, evolution and dispersal [W183]. Wu Guohong Albert, Terol Javier F., Ibáñez Victoria, López-García Antonio, Pérez-Román Estela, Borredá Carles, Carrasco Concha Domingo, Tadeo Francisco, Carbonell Jose, Alonso Roberto, Curk Franck, Du Dongliang, Ollitrault Patrick, Roose Mikeal L., Dopazo Joaquin, Gmitter Frederick G., Rokhsar Daniel S., Talon Manuel. 2018. In : Proceedings Plant and Animal Genome XXVI Conference. PAG. San Diego : PAG, Résumé, 1 p. Plant and Animal Genomes Conference. 26, San Diego, États-Unis, 13 Janvier 2018/17 Janvier 2018.

A reference sequence of the monoploid genome of sugarcane. [W950]. Garsmeur Olivier, Droc Gaëtan, Grimwood Jane, Potier Bernard, Aitken Karen S., Jenkins Jerry, Charron Carine, Martin Guillaume, Van der Vossen Edwin, Kilian Andrzej, Berges Hélène, Simmons Blake, Schmutz Jeremy, D'Hont Angélique. 2018. In : Proceedings Plant and Animal Genome XXVI Conference. PAG. San Diego : PAG, Résumé, 1 p. Plant and Animal Genomes Conference. 26, San Diego, États-Unis, 13 Janvier 2018/17 Janvier 2018.

Genome-wide analysis of Corynespora cassiicola putative effectors involved in the CLF disease of rubber tree. Session 4. Poster 76. Lopez David, Label Philippe, Fumanal Boris, Ribeiro Sébastien, Kohler Annegret, Ohm Robin, Spatafora Joseph W., Grigoriev Igor, Martin Francis, Pujade-Renaud Valérie. 2017. In : Deepen Knowledge in Plant Pathology for Innovative Agro-Ecology. Book of Abstracts of the 12th European Fondation for Plant Pathology (EFPP) and the 10th French Society for Plant Pathology (SFP). EFPP, SFP. Dunkerque : EFPP-FSP, Résumé, 1 p. European Foundation for Plant Pathology Conference. 12, Dunkerque, France, 29 Mai 2017/2 Juin 2017.

Genomics illuminates the origin and dispersal of citrus. [W146]. Albert Wu G., Terol Javier F., Ibáñez Victoria, López-García Antonio, Pérez-Román Estela, Borredá Carles, Carrasco Concha Domingo, Tadeo Francisco, Carbonell Jose, Alonso Roberto, Curk Franck, Du Dongliang, Ollitrault Patrick, Roose Mikeal L., Dopazo Joaquin, Gmitter Frederick G., Rokhsar Daniel S., Talon Manuel. 2017. In : Proceedings Plant and Animal Genome XXV Conference. San Diego : PAG, 1 p. Plant and Animal Genome Conference. 25, San Diego, États-Unis, 14 Janvier 2017/18 Janvier 2017.

A Reference Sequence of the Monoploid Genome of Sugarcane. [W889]. Garsmeur Olivier, Aitken Karen S., Potier Bernard, Grimwood Jane, Charron Carine, Droc Gaëtan, Berkman Paul, Martin Guillaume, Berges Hélène, Van der Vossen Edwin, Simmons Blake, Schmutz Jeremy, Henry Robert, D'Hont Angélique. 2017. In : Proceedings Plant and Animal Genome XXV Conference. San Diego : PAG, 1 p. Plant and Animal Genome Conference. 25, San Diego, États-Unis, 14 Janvier 2017/18 Janvier 2017.

Citrus origin and domestication: an evolutionary paradigm for the genus citrus. Wu Guohong Albert, Terol Javier F., Ibáñez Victoria, López-García Antonio, Domingo Concha, Tadeo Francisco, Pérez-Román Estela, Carbonell Jose, Alonso Roberto, Curk Franck, Ollitrault Patrick, Roose Mikeal L., Dopazo Joaquin, Gmitter Frederick G., Rokhsar Daniel S., Talon Manuel. 2016. In : Abstract book Sustainable citriculture: the role of applied knowledge. Mattos Dirceu (ed.), Fermino Carlos Eduardo (ed.), Moreira Novelli Valdenice (ed.), Alves de Azevedo Fernando (ed.), Della Coletta Filho Helvécio (ed.), Vicente Contador Zaccheo Paulo (ed.). IAC, IAPAR. Londrina : IAPAR, Résumé, 122-123. ISBN 978-85-88184-55-8 International Citrus Congress, Foz do Iguaçu, Brésil, 18 Septembre 2016/23 Septembre 2016.

Combating a global threat to a clonal crop: Banana black sigatoka pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) genomes reveal clues for disease control. Arango Isaza Rafael E., Diaz-Trujillo Caucasella, Dhillon Braham, Aerts Andrea, Carlier Jean, Crane Charles F., de Jong Tristan V., De Vries Ineke, Dietrich Robert, Farmer Andrew, Fortes Fereira Claudia, Garcia Suzana, Guzman Mauricio, Hamelin Richard C., Lindquist Erika, Mehrabi Rahim, Quiros Madrigal Olman, Schmutz Jeremy, Shapiro Harris, Reynolds Elizabeth, Scalliet Gabriel, Souza Manoel, Stergiopoulos Ioannis, Van der Lee Theo A.J., De Wit Pierre J. G. M., Zapater Marie-Françoise, Zwiers Lute-Harm, Grigoriev Igor, Goodwin Stephen B., Kema Gert H.J.. 2016. PLoS Genetics, 12 (8):e1005876, 36 p.

Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity. Bredeson Jessen V., Lyons Jessica B., Prochnik Simon, Wu Guohong Albert, Ha Cindy M., Edsinger-Gonzales Eric, Grimwood Jane, Schmutz Jeremy, Rabbi Ismail Y., Egesi Chiedozie, Nauluvula Poasa, Lebot Vincent, Ndunguru Joseph, Mkamilo Geoffrey, Bart Rebecca, Setter Tim, Gleadow Roslyn M., Kulakow Peter, Ferguson Morag E., Rounsley Steve, Rokhsar Daniel S.. 2016. Nature Biotechnology, 34 (5) : 562-570.

High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly. Bartholomé Jérôme, Mandrou Eric, Mabiala André, Jenkins Jerry, Nabihoudine Ibouniyamine, Klopp Christophe, Schmutz Jeremy, Plomion Christophe, Gion Jean-Marc. 2015. New Phytologist, 206 (4), n.spéc. Featured papers on 'Eucalyptus genome' : 1283-1296.

Genome sequence comparisons reveal interspecific hybridizations and admixture in citrus domestication : [W317]. Gmitter Frederick G. Jr., Wu Guohong Albert, Prochnik Simon, Ollitrault Patrick, Talon Manuel, Machado Marcos Antonio, Morgante Michele, Jaillon Olivier, Rokhsar Daniel S.. 2014. In : Plant and Animal Genomes Conference XXII Conference, San diego, United States, San Diego, United States, January 11-15, 2014. s.l. : s.n., Résumé Plant and Animal Genome Conference. 22, San Diego, États-Unis, 11 Janvier 2014/15 Janvier 2014.

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Wu Guohong Albert, Prochnik Simon, Jenkins Jerry, Salse Jérôme, Hellsten Uffe, Murat Florent, Perrier Xavier, Ruiz Manuel, Scalabrin Simone, Terol Javier F., Takita Marco Aurélio, Labadie Karine, Poulain Julie, Couloux Arnaud, Jabbari Kamel, Cattonaro Frederica, Del Fabbro Cristian, Pinosio Sara, Zuccolo Andrea, Chapman Jarrod, Grimwood Jane, Tadeo Francisco, Estornell Leandro H., Muñoz-Sanz Juan V., Ibáñez Victoria, Herrero-Ortega Amparo, Aleza Pablo, Pérez-Pérez Júlian, Ramón Daniel, Brunel Dominique, Luro François, Chen Chunxian, Farmerie William G., Desany Brian, Kodira Chinnappa, Mohiuddin Mohammed, Harkins Tim, Fredrikson Karin, Burns Paul, Lomsadze Alexandre, Borodovsky Mark, Reforgiato Giuseppe, Freitas-Astúa Juliana, Quetier Francis, Navarro Luis, Roose Mikeal L., Wincker Patrick, Schmutz Jeremy, Morgante Michele, Machado Marcos Antonio, Talon Manuel, Ollitrault Patrick, Gmitter Frederick G. Jr., Rokhsar Daniel S.. 2014. Nature Biotechnology, 32 : 656-662.

Genome sequence analysis and comparisons reveal ancestral hybridization and admixture events in the origins of some citrus cultivars : S03O01. Gmitter Frederick G., Ollitrault Patrick, Machado Marcos Antonio, Reforgiato Recupero Giuseppe, Talon Manuel, Roose Mikeal L., Navarro Luis, Wu Guohong Albert, Jaillon Olivier, Morgante Michele, Rokhsar Daniel S.. 2012. In : XII International Citrus Congress : Book of abstract. Navarro Luis (ed.). ISC, IVIA, Fundación agroalimed. Riverside : ISC, Résumé, 61. International Citrus congress "Citrus and health. 12, Valence, Espagne, 18 Novembre 2012/23 Novembre 2012.

Sequencing the major mycosphaerella pathogens of wheat and banana. Kema Gert H.J., Dunkle Larry D., Churchill Alice C.L., Carlier Jean, James Andy, Souza Manoel, Crous Pedro W., Roux Nicolas, Van der Lee Theo A.J., Wittenberg Alexander, Lindquist Erika, Grigoriev Igor, Bristow Jim, Goodwin Stephen B.. 2007. In : Abstracts of Plant and Animal Genomes XVth Conference, San Diego, CA (USA), January 13-17, 2007. s.l. : s.n., Résumé Plant and Animal Genomes Conference. 15, San Diego, États-Unis, 13 Janvier 2007/17 Janvier 2007.