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Benchmarking of virome metagenomic analysis approaches using a large, 60+ members, viral synthetic community. Schönegger Deborah, Moubset Oumaima, Margaria Paolo, Menzel Wulf, Winter Stephan, Roumagnac Philippe, Marais Armelle, Candresse Thierry. 2023. Journal of Virology, 97 (11), 20 p.

Plant viruses are growing in the European virus archive network. Accotto Gian Paolo, Candresse Thierry, Chabannes Matthieu, Ciuffo Marina, Desbiez Cécile, Gentit Pascal, Glasa Miroslav, Iskra Caruana Marie-Line, Jelkmann Wilhelm, Marais Armelle, Menzel Wulf, Mulabisana Julia, Niehl Annette, Prat Christian, Predajna Lukas, Richert-Pöggeler Katja R., Romette Jean-Louis, Rubino Luisa, Urbino Cica, Verdin Eric, Ziebell Heiko, Zikeli Kerstin. 2022. In : International Advances in Plant Virology 2022. AAB. Ljubljana : AAB, 1 International Advances in Plant Virology (IAPV 2022), Ljubljana, Slovénie, 5 Octobre 2022/7 Octobre 2022.

Plant viruses go global: The European Virus Archive. Richert-Poeggeler Katja R., Accotto Gian Paolo, Candresse Thierry, Chabannes Matthieu, Desbiez Cécile, Gentit Pascal, Glasa Miroslav, Iskra Caruana Marie-Line, Jelkmann Wilhelm, Marais Armelle, Menzel Wulf, Mulabisana Julia, Niehl Annette, Pierro Roberto, Predajna Lukas, Romette Jean-Louis, Rubino Luisa, Verdin Eric, Urbino Cica, Ziebell Heiko, Zikeli Kerstin. 2021. In : Proceedings of the XV International Symposium on Virus Diseases of Ornamental Plants. Wong S.M. (ed.), Hammond J. (ed.), Adkins S. (ed.). ISHS. Louvain : ISHS, 75-86. (Acta Horticulturae, 1392) International Symposium on Virus Diseases of Ornamental Plants. 15, Singapour, Singapour, 13 Décembre 2021/17 Décembre 2021.

Towards unraveling macroecological patterns in rhizosphere microbiomes. Brunel Caroline, Pouteau Robin, Dawson Wayne, Pester Michael, Ramirez Kelly S., van Kleunen Mark. 2020. Trends in Plant Science, 25 (10) : 1017-1029.

Nanopore-based detection and characterization of yam viruses. Filloux Denis, Fernandez Emmanuel, Loire Etienne, Claude Lisa, Galzi Serge, Candresse Thierry, Winter Stephan, Jeeva M.L., Makeshkumar T., Martin Darren Patrick, Roumagnac Philippe. 2019. In : Livre des résumés des 17 ème Rencontres de virologie végétale. INRA, CIRAD, CNRS, SFP, SFV. Aussois : INRA, Résumé, 53. Rencontres de Virologie Végétale (RVV 2019). 17, Aussois, France, 27 Janvier 2019/31 Janvier 2019.

Adapting clonally propagated crops to climatic changes: A global approach for taro (Colocasia esculenta(L.) Schott). Lebot Vincent, Tuia Valérie Saena, Ivancic Anton, Jackson G. V. H., Saborio F., Reyes G., Rodriguez S., Robin G., Traore Renan, Aboagye L.M., Onyeka Joseph, Van Rensburg W., Andrianavalona V., Mukherjee Archana, Prana M.S., Ferraren D., Komolong Birte, Lawac Floriane, Winter Stephan, Pinheiro de Carvalho Miguel A.A., Losefa T.. 2018. Genetic Resources and Crop Evolution, 65 (2) : 591-606.

Nanopore-based detection and characterization of yam viruses. Filloux Denis, Fernandez Emmanuel, Loire Etienne, Claude Lisa, Galzi Serge, Candresse Thierry, Winter Stephan, Jeeva M.L., Makeshkumar T., Martin Darren Patrick, Roumagnac Philippe. 2018. Scientific Reports, 8:17879, 11 p.

Surveillance and control of cassava diseases in Africa - International meeting results in Pan-African cassava disease network. [SP5-01]. Lett Jean-Michel, Roux Cuvelier Michel, Hamza Abdou Azali, Atta Diallo H., Beach Larry, Brouchoud Henri, Brugidou Christophe, Cuellar W., Delatte Hélène, Dintinger Jacques, Djikeng Apollinaire, Duval Marie-France, Ethel Malika, Gowda Maruthi, Jouen Emmanuel, Koebnik Ralf, Koita Ousmane, Koné Daouda, Kouassi K. Nazaire, Kpemoua Kossi, Kulakow Peter, Lava Kumar P., Legg James, Offei Kouame, Okogbenin Emmanuel, Onyeka Joseph, Poussier Stéphane, Quain D. Marian, Rakotoarisoa Jacqueline, Robène Isabelle, Rwomushanalvan, Sagnia B. Sankung, Sangare Abdourahamane, Sseruwagi Peter, Tiendrebeogo Fidèle, Vernier Philippe, Vernière Christian, Winter Stephan, Zacarias Anabela, Zinga Innocent, Verdier Valérie, Reynaud Bernard, Fauquet Claude. 2016. In : Electronic Proceedings of World Congress on Root and Tuber Crops. Nanning : WCRTC, Résumé, 1 p. World Congress on Root and Tuber Crops. 1, Nanning, Chine, 18 Janvier 2016/22 Janvier 2016.

The genomes of several plant species contain endogenous geminiviral sequences. Filloux Denis, Murrell Sasha, Koohapitagtam M., Golden Michael, Julian Jacqueline, Galzi Serge, Uzest Marilyne, Rodier-Goud Marguerite, D'Hont Angélique, Vernerey Marie-Stéphanie, Wilkin P., Peterschmitt Michel, Winter Stephan, Murrell Ben, Martin Darren Patrick, Roumagnac Philippe. 2016. In : 8th International Geminivirus Symposium. University of Delhi, Jawaharlal Nehru University, Jamia Millia Islamia, ICAR-NRCPB , NIPGR, Indian Virological Society. s.l. : s.n., 1. International Geminivirus Symposium. 8, New Delhi, Inde, 7 Novembre 2016/10 Novembre 2016.

Endogenous murine leukemia retroviral variation across wild European and inbred strains of house mouse. Hartmann Stefanie, Hasenkamp Natascha, Mayer Jens, Michaux Johan, Morand Serge, Mazzoni Camila J., Roca Alfred L., Greenwood Alex. 2015. BMC Genomics, 16 (613), 13 p.

Global parasite and Rattus rodent invasions: The consequences for rodent-borne diseases. Morand Serge, Bordes Frédéric, Hsuan-Wien Chen, Claude Julien, Cosson Jean François, Galan Maxime, Czirják Gábor, Greenwood Alex, Latinne Alice, Michaux Johan, Ribas Alexis. 2015. Integrative Zoology, 10 (5) : 409-423.

Metagenomic discovery, worldwide distribution and genetic diversity of novel macluraviruses infecting yams (Dioscorea spp.). [P.28]. Filloux Denis, Bonheur Lydiane, Umber Marie, Pavis Claudie, Fernandez Emmanuel, Galzi Serge, Julian Charlotte, Daugrois Jean-Heinrich, Sukal Amit, Winter Stephan, Teycheney Pierre-Yves, Candresse Thierry, Roumagnac Philippe. 2015. In : 15èmes Rencontres de Virologie Végétale, Aussois, France, 18-22 janvier 2015. CIRAD ; IRD. s.l. : s.n., Résumé, 86. Rencontres de virologie végétale. 15, Aussois, France, 18 Janvier 2015/22 Janvier 2015.

The genomes of many yam species contain transcriptionally active endogenous geminiviral sequences that may be functionally expressed. Filloux Denis, Murrell Sasha, Koohapitagtam M., Golden Michael, Julian Charlotte, Galzi Serge, Uzest Marilyne, Rodier-Goud Marguerite, D'Hont Angélique, Vernerey Marie-Stéphanie, Wilkin P., Peterschmitt Michel, Winter Stephan, Murrell Ben, Martin Darren Patrick, Roumagnac Philippe. 2015. Virus Evolution, 1 (1), 17 p.

Surveillance and control of cassava diseases in Africa. Lett Jean-Michel, Roux Cuvelier Michel, Hamza Abdou Azali, Atta Diallo H., Beach Larry, Brouchoud Henri, Brugidou Christophe, Cuellar W., Delatte Hélène, Dintinger Jacques, Djikeng Apollinaire, Duval Marie-France, Ethel Malika, Gowda Maruthi, Jouen Emmanuel, Koebnik Ralf, Koita Ousmane, Koné Daouda, Kouassi K. Nazaire, Kpemoua Kossi, Kulakow Peter, Lava Kumar P., Legg James, Offei Kouame, Okogbenin Emmanuel, Onyeka Joseph, Poussier Stéphane, Quain D. Marian, Rakotoarisoa Jacqueline, Robène Isabelle, Rwomushanalvan, Sagnia B. Sankung, Sangare Abdourahamane, Sseruwagi Peter, Tiendrebeogo Fidèle, Vernier Philippe, Vernière Christian, Winter Stephan, Zacarias Anabela, Zinga Innocent, Verdier Valérie, Reynaud Bernard, Fauquet Claude. 2014. In : International workshop : Surveillance and control of cassava diseases in Africa, Saint Pierre, Réunion, 10-13 June 2014. CIRAD, IRD, GCP21. Saint Pierre : CIRAD-IRD, 1 poster International Workshop "Surveillance and control of cassava diseases in Africa", Saint Pierre, Réunion, 10 Juin 2014/13 Juin 2014.