Genetic diversity of the world's largest oil palm (Elaeis guineensis Jacq.) field genebank accessions using microsatellite markers

Bakoumé Claude, Wickneswari Ratnam, Siju S., Rajanaidu Nookiah, Kushairi Ahmad, Billotte Norbert. 2015. Genetic diversity of the world's largest oil palm (Elaeis guineensis Jacq.) field genebank accessions using microsatellite markers. Genetic Resources and Crop Evolution, 62 (3) : 349-360.

Quartile : Q2, Sujet : AGRONOMY / Quartile : Q3, Sujet : PLANT SCIENCES

Résumé : The extent of genetic diversity among 494 oil palms from 49 populations (representing ten African countries, three breeding materials, and one semi-wild material) were assessed using 16 SSR markers. The genetic diversity was high with a total of 209 alleles detected accounting for an average of 13.1 alleles per locus and a mean expected heterozygosity of 0.644. The average genetic distance among accessions was 0.769, varying from 0.000 to 1.000. Both principal coordinates analysis and neighbor joining tree, confirmed by structure analysis, clustered the entire collections into three groups: the Extreme West Africa (EWA) group (collections from Senegal, Guinea, and Sierra Leone), the West, Central, and East Africa (WCEA) group (collections from Ghana, Nigeria, Cameroon, Zaire, Angola, Tanzania, Bahia, the semi-wild material and the two Deli breeding materials) and the Madagascar group (collections uniquely from Madagascar). Madagascar populations were found to be genetically distinct from all other African populations. The influence of human and environmental factors might have played a major role in grouping the African natural oil palm into three different groups as well as in the formation of a transition zone (formed by Ghana and Côte d'Ivoire). Further analysis of genetic structure revealed Deli materials as a distinct population within the WCEA group. Given the fact that accessions were exchanged between the EWA and WCEA groups, intra- and inter-group combinations for breeding should be based mainly on the genetic distance between accessions to increase yield and heterosis.

Mots-clés Agrovoc : Elaeis guineensis, variation génétique, génétique des populations, phylogénie, collection de matériel génétique, microsatellite, marqueur génétique, banque de gènes, provenance

Mots-clés géographiques Agrovoc : Sénégal, Nigéria, République démocratique du Congo, Angola, République-Unie de Tanzanie, Bahia, Madagascar, Ghana, Côte d'Ivoire, Guinée, Cameroun, Sierra Leone, Afrique

Classification Agris : F30 - Génétique et amélioration des plantes
F70 - Taxonomie végétale et phytogéographie

Champ stratégique Cirad : Axe 1 (2014-2018) - Agriculture écologiquement intensive

Auteurs et affiliations

• Bakoumé Claude, University Kebangsaa Malaysia (MYS)
• Wickneswari Ratnam, University Kebangsaa Malaysia (MYS)
• Siju S., University Kebangsaa Malaysia (MYS)
• Rajanaidu Nookiah, MPOB (MYS)
• Kushairi Ahmad, MPOB (MYS)
• Billotte Norbert, CIRAD-BIOS-UMR AGAP (FRA)

Source : Cirad - Agritrop (https://agritrop.cirad.fr/575420/)

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