Résultats pour : "phylogénie"

Celebrating the 20th anniversary of the first Xanthomonas genome sequences - how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures - a perspective from the French network on Xanthomonads. Koebnik Ralf, Cesbron Sophie, Chen Nicolas W.G., Fischer-Le Saux Marion, Hutin Mathilde, Jacques Marie Agnès, Noel Laurent D., Pérez-Quintero Alvaro L., Portier Perrine, Pruvost Olivier, Rieux Adrien, Szurek Boris. 2024. Peer Community Journal, 4:e19, 22 p.

Complete sequence and genome characterization of miscanthus virus M, a new betaflexivirus from Miscanthus sp. Abrahamian Peter, Grinstead Samuel, Kinard Gary, Goenaga Ricardo, Rott Philippe, Mollov Dimitre S.. 2024. Archives of Virology, 169:27, 5 p.

Content and distribution of cyanogenic compounds in cassava roots and leaves in association with physiological age. Ospina Maria Alejandra, Tran Thierry, Pizarro Monica, Luna Jorge, Salazar Sandra, Londoño Luis Fernando, Ceballos Hernan, Becerra López-Lavalle Luis Agusto, Dufour Dominique. 2024. Journal of the Science of Food and Agriculture, 9 p.

Frankia-actinorhizal symbiosis: A non-chemical biological assemblage for enhanced plant growth, nodulation and reclamation of degraded soils. Bhattacharyya Pranaba Nanda, Islam Nazim Forid, Sarma Bhaskar, Nath Bharat Chandra, Tawfeeq Al-Ani Laith Khalil, Lesueur Didier. 2024. Symbiosis, 92 : 1-26.

New insights in the evolutionary history of cacao-infecting badnaviruses. Gonzalez Grande Patricia Lorena, Micheli Fabienne. 2024. Physiological and Molecular Plant Pathology, 130:102242, 20 p.

A comprehensive framework for the delimitation of species within the Bemisia tabaci cryptic complex, a global pest-species group. Wang Hua-Ling, Lei Teng, Wang Xiaowei, Cameron Stephen L., Navas-Castillo Jesús, Liu Yin-Quan, Maruthi M.N., Omongo Christopher A., Delatte Hélène, Lee Kyeong-Yeoll, Krause-Sakate Renate, Ng James, Seal Susan, Fiallo-Olivé Elvira, Bushley Kathryn, Colvin John, Liu Shu-Sheng. 2024. Insect Science, 22 p.

A new species of planthopper in the genus Paraphenice (Hemiptera: Derbidae: Otiocerinae) from palms in eastern Madagascar. Bahder Brian W., Stroinski Adam, Lukasik Piotr, Bartlett Charles R., Pilet Fabian, Harin'Hala Hasinjaka Rasolondalao. 2024. Zootaxa, 5406 (3) : 461-473.

African army ants at the forefront of virome surveillance in a remote tropical forest. Fritz Matthieu, Reggiardo Bérénice, Filloux Denis, Claude Lisa, Fernandez Emmanuel, Mahe Frédéric, Kraberger Simona, Custer Joy M., Becquart Pierre, Mebaley Telsta Ndong, Kombila Linda Bohou, Lenguiya Léadisaelle H., Boundenga Larson, Mombo Illich M., Maganga Gaël Darren, Niama Fabien R., Koumba Jean-Sylvain, Ogliastro Mylène, Yvon Michel, Martin Darren Patrick, Blanc Stéphane, Varsani Arvind, Leroy Eric M., Roumagnac Philippe. 2023. Peer Community Journal, 3:e24, 21 p.

Bacteriocin production correlates with epidemiological prevalence of phylotype I sequevar 18 Ralstonia pseudosolanacearum in Madagascar. Rasoamanana Hasina, Ravelomanantsoa Santatra, Nomenjanahary Marie-Véronique, Gauche Miharisoa-Mirana, Prior Philippe, Guérin Fabien, Robène Isabelle, Pecrix Yann, Poussier Stéphane. 2023. Applied and Environmental Microbiology, 89 (1), 15 p.

Benchmarking of virome metagenomic analysis approaches using a large, 60+ members, viral synthetic community. Schönegger Deborah, Moubset Oumaima, Margaria Paolo, Menzel Wulf, Winter Stephan, Roumagnac Philippe, Marais Armelle, Candresse Thierry. 2023. Journal of Virology, 97 (11), 20 p.

CRISPRi in Xanthomonas demonstrates functional convergence of transcription activator-like effectors in two divergent pathogens. Zárate-Chaves Carlos Andrés, Audran Corinne, Medina Culma César Augusto, Escalon Aline, Javegny Stéphanie, Gagnevin Lionel, Thomas Emilie, Pimparé Léa-Lou, López Camilo, Jacobs Jonathan M., Noel Laurent D., Koebnik Ralf, Bernal Adriana Jimena, Szurek Boris. 2023. New Phytologist, 238 (4) : 1593-1604.

Cannabis virome reconstruction and antiviral RNAi characterization through small RNA sequencing. Miotti Niccolo, Sukhikh Natalia, Laboureau Nathalie, Casati Paola, Pooggin Mikhail. 2023. Plants, 12 (23), n.spéc. Different Aspects of Plant Viral Metagenomics:3925, 12 p.

Draft genome sequences of Neurospora crassa clade B, isolated from burned Cytisus sp. plants in France. Bonometti Lucas, De Bellis Fabien, Cros-Arteil Sandrine, Gladieux Pierre, Stajich Jason E., Gueret Elise. 2023. Microbiology Resource Announcements, 12 (12), 3 p.

Endogenous caulimovirids: Fossils, zombies, and living in plant genomes. Vassilieff Héléna, Geering Andrew D., Choisne Nathalie, Teycheney Pierre-Yves, Maumus Florian. 2023. Biomolecules, 13 (7):1069, 18 p.

Evaluation of NS4A, NS4B, NS5 and 3'UTR Genetic Determinants of WNV Lineage 1 Virulence in Birds and Mammals. Fiacre Lise, Lowenski Steeve, Bahuon Céline, Dumarest Marine, Lambrecht Bénédicte, Dridi Maha, Albina Emmanuel, Richardson Jennifer, Zientara Stéphan, Jiménez-Clavero Miguel Angel, Pardigon Nathalie, Gonzalez Gaëlle, Lecollinet Sylvie. 2023. Viruses, 15 (5), n.spéc. Usutu, West Nile and Tickborne Encephalitis Viruses:1094, 22 p.

Evolution of the cotton genus, Gossypium, and its domestication in the Americas. Viot Christopher, Wendel Jonathan F.. 2023. Critical Reviews in Plant Sciences, 42 (1) : 1-33.

First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): Comparative models for mimicry genetic studies. Gauthier Jérémy, Meier Joana, Legeai Fabrice, McClure Melanie, Whibley Annabel, Bretaudeau Anthony, Boulain Hélène, Parrinello Hugues, Mugford Sam T., Durbin Richard, Zhou Chenxi, McCarthy Shane, Wheat Christopher W., Piron-Prunier Florence, Monsempès Christelle, François Marie-Christine, Jay Paul, Noûs Camille, Persyn Emma, Jacquin-Jolyb Emmanuelle, Meslin Camille, Montagné Nicolas, Lemaitre Claire, Elias Marianne. 2023. Molecular Ecology Resources, 23 (4) : 872-885.

Genetic diversity and molecular epidemiology of Middle East Respiratory Syndrome Coronavirus in dromedaries in Ethiopia, 2017-2020. Zhou Ziqi, Ali Abraham, Walelign Elias, Demissie Getnet Fekadu, El Masry Ihab, Abayneh Takele, Getachew Belayneh, Krishnan Pavithra, Ng Daisy Y.M., Gardner Emma, Makonnen Yilma, Miguel Eve, Chevalier Véronique, Chu Daniel K.W., So Ray T.Y., Von Dobschuetz Sophie, Mamo Gezahegne, Poon Leo L.M., Peiris Malik. 2023. Emerging Microbes and Infections, 12 (1):e2164218, 9 p.

Genetic diversity, evolution, and diagnosis of sugarcane yellow leaf virus from 19 sugarcane-producing locations worldwide. Rott Philippe, Grinstead Samuel, Dallot Sylvie, Foster Zachary S. L., Daugrois Jean-Heinrich, Fernandez Emmanuel, Kaye Claudia, Hendrickson Leticia, Hu Xiaojun, Adhikari Bishwo, Malapi Martha, Grunwald Niklaus J., Roumagnac Philippe, Mollov Dimitre S.. 2023. Plant Disease, 10711 : 3437-3447.

Genetic structure and TALome analysis highlight a high level of diversity in burkinabe Xanthomonas Oryzae pv. oryzae populations. Diallo A., Wonni Issa, Sicard Anne, Blondin Laurence, Gagnevin Lionel, Vernière Christèle, Szurek Boris, Hutin Mathilde. 2023. Rice, 16:33, 14 p.

Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes. Wang Zheng-Feng, Rouard Mathieu, Droc Gaëtan, Heslop Harrison Pat, Ge Xue-Jun. 2023. GigaScience, 12, 20 p.

Genome-wide development of intra- and inter-specific transferable SSR markers and construction of a dynamic web resource for yam molecular breeding: Y2MD. Diouf Moussa, Bovys Zoclanclounon Yedomon Ange, Mboup Pape Adama Mboup, Diouf Diaga, Maledon Erick, Rivallan Ronan, Chair Hanâ, Dossa Komivi. 2023. Plant Genome:e20428, 18 p.

Genomic analysis of two phlebotomine sand fly vectors of Leishmania from the New and Old World. Labbe Frédéric, Abdeladhim Maha, Abrudan Jenica, Araki Alejandra Saori, Araujo Ricardo N., Arensburger Peter, Benoit Joshua B., Brazil Reginaldo Pecanha, Bruno Rafaela V., Bueno da Silva Rivas Gustavo, Carvalho de Abreu Vinicius, Charamis Jason, Coutinho-Abreu Iliano V., da Costa-Latgé Samara G., Darby Alistair, Dillon Viv M., Emrich Scott J., Fernandez-Medina Daniela, Figueiredo Gontijo Nelder, Flanley Catherine M., Gatherer Derek, Genta Fernando A., Gesing Sandra, Giraldo-Calderón Gloria I., Gomes Bruno, Aguiar Eric Roberto Guimaraes Rocha, Hamilton James G. C., Hamarsheh Omar, Hawksworth Mallory, et al.. 2023. PLoS Neglected Tropical Diseases, 17 (4):e0010862, 35 p.

Herbarium specimen sequencing allows precise dating of Xanthomonas citri pv. citri diversification history. Campos Paola, Pruvost Olivier, Boyer Karine, Chiroleu Frédéric, Cao Thuy Trang, Gaudeul Myriam, Baider Claudia, Utteridge Timothy M. A., Becker Nathalie, Rieux Adrien, Gagnevin Lionel. 2023. Nature Communications, 14:4306, 13 p.

High intraspecific growth variability despite strong evolutionary legacy in an Amazonian forest. Schmitt Sylvain, Herault Bruno, Derroire Géraldine. 2023. Ecology Letters, 26 (12) : 2135-2146.

Integrative taxonomy and phylogeny of leafless Vanilla orchids from the South‐West Indian Ocean region reveal two new Malagasy species. Andriamihaja Cathucia, Botomanga Alemao, Misandeau Chantal, Ramarosandratana Ndriana Aro Vonjy H., Grisoni Michel, Da Silva Denis, Pailler Thierry, Jeannoda Vololoniaina, Besse Pascale. 2023. Journal of Systematics and Evolution, 61 (1), Celebrating the legacy and life of Professor Wen-Tsai Wang : 80-98.

Interpreting phylogenetic placements for taxonomic assignment of environmental DNA. Ewers Isabelle, Rajter Lubomir, Czech Lucas, Mahe Frédéric, Stamatakis Alexandros, Dunthorn Micah. 2023. Journal of Eukaryotic Microbiology, 70 (5):12990, 10 p.

Long term circulation of Sars-Cov-2 related lineages in bats in Cambodia. Ou Tey Putita, Karlsson E., Guillebaud Julia, Auerswald Heidi, Dussart Philippe, Simon-Lorière Etienne, Cappelle Julien, Duong Veasna. 2023. International Journal of Infectious Diseases, 130, suppl. 2 : S111. International Congress on Infectious Diseases (ICID KL 2022), Kuala Lumpur, Malaisie, 17 Novembre 2022/20 Novembre 2022.

Long-term anthropogenic management and associated loss of plant diversity deeply impact virome richness and composition of Poaceae communities. Maclot François, Debue Virginie, Malmstrom Carolyn M., Filloux Denis, Roumagnac Philippe, Eck Mathilde, Tamisier Lucie, Blouin Arnaud G., Candresse Thierry, Massart Sébastien. 2023. Microbiology Spectrum, 11 (2), 17 p.

Longitudinal survey of astrovirus infection in different bat species in Zimbabwe: Evidence of high genetic astrovirus diversity. Chidoti Vimbiso, De Nys Hélène, Abdi Malika, Mashura Getrude, Pinarello Valérie, Chiweshe Ngoni, Matope Gift, Guerrini Laure, Pfukenyi Davies Mubika, Cappelle Julien, Mwandiringana Ellen, Missé Dorothée, Gori Elizabeth, Bourgarel Mathieu, Liégeois Florian. 2023. Peer Community Journal, 3:e106, 18 p.

Loop-mediated isothermal amplification assays for rapid detection of Ralstonia solanacearum species complex and phylotype I in solanaceous crops. Robène Isabelle, Maillot-Lebon Véronique, Pecrix Yann, Ravelomanantsoa Santatra, Massé Delphine, Jouen Emmanuel, Rasoamanana Hasina, Fenelon Babbitha, Javegny Stéphanie, Seguin Marc, Lebon Sylvain, Poussier Stéphane, Pruvost Olivier. 2023. PhytoFrontiers, 3 (3) : 582-593.

Molecular detection of Loxodontofilaria spp. in Asian elephants (Elephas maximus) from elephant training camps in Thailand. Saengsawang Phirabhat, Desquesnes Marc, Yangtara Sarawut, Chalermwong Piangjai, Thongtip Nikorn, Jittapalapong Sathaporn, Inpankaew Tawin. 2023. Comparative Immunology, Microbiology and Infectious Diseases, 92:101910, 8 p.

Molecular diversity of yam virus Y and identification of banana mild mosaic virus isolates infecting yam (Dioscorea spp.). Diouf Mame Boucar, Guyader Sébastien, Nopoly Marie-Michelle, Gaspard Olyvia, Filloux Denis, Candresse Thierry, Marais Armelle, Teycheney Pierre-Yves, Umber Marie. 2023. Archives of Virology, 168:180, 8 p.

Molecular epidemiology of Ralstonia pseudosolanacearum phylotype I strains in the Southwest Indian Ocean Region and their relatedness to African strains. Cellier Gilles, Nordey Thibault, Cortada Laura, Gauche Mirana, Rasoamanana Hasina, Yahiaoui Noura, Rebert Emeline, Prior Philippe, Cheron Jean-Jacques, Poussier Stéphane, Pruvost Olivier. 2023. Phytopathology, 113 (3) : 423-435.

Nutrient-based species selection is a prevalent driver of community assembly and functional trait space in tropical forests. Peguero Guille, Coello Fernando, Sardans Jordi, Asensio Dolores, Grau Oriol, LLusià Joan, Ogaya Romà, Urbina Ifigenia, Van Langenhove Leandro, Verryckt Lore T., Stahl Clément, Bréchet Laëtitia, Courtois Elodie A., Chave Jérôme, Herault Bruno, Janssens Ivan A., Peñuelas Josep. 2023. Journal of Ecology, 111 (6) : 1218-1230.

Occurrence of triploids in oil palm and their origin. Pomies Virginie, Turnbull Nicolas, Le Squin Sandrine, Syahputra Indra, Suryana Edyana, Durand-Gasselin Tristan, Cochard Benoît, Bakry Frédéric. 2023. Annals of Botany, 131 (1) : 17-32.

One Health compartment analysis of ESBL-producing Escherichia coli reveals multiple transmission events in a rural area of Madagascar. Gay Noellie, Rabenandrasana Mamitina Alain Noah, Panandiniaina Harielle Prisca, Rakotoninidrina Marie Florence, Ramahatafandry Ilo Tsimok'Haja, Enouf Vincent, Roger François, Collard Jean-Marc, Cardinale Eric, Rieux Adrien, Loire Etienne. 2023. Journal of Antimicrobial Chemotherapy, 78 (8) : 1848-1858.

Phylogenomics illuminates the phylogeny of flower weevils (Curculioninae) and reveals ten independent origins of brood-site pollination mutualism in true weevils. Haran Julien, Li X., Allio R., Shin Seunggwan, Benoit Laure, Oberprieler Rolf G., Farrell B.D., Brown S. D. J., Leschen Richard A.B., Kergoat Gael J., McKenna Duane D.. 2023. Proceedings of the Royal Society B: Biological Sciences, 290 (2008), 11 p.

Phylostems: A new graphical tool to investigate temporal signal of heterochronous sequences datasets. Doizy Anna, Prin Amaury, Cornu Guillaume, Chiroleu Frédéric, Rieux Adrien. 2023. Bioinformatics Advances, 3 (1):vbad026, 5 p.

The Ralstonia research community rejects the proposal to classify phylotype I Ralstonia into the new species Ralstonia nicotianae. Lowe-Power Tiffany M., Sharma Parul, Alfenas-Zerbini Poliane, Alvarez Belén, Arif Mohammad, Baroukh Caroline, Bocsanczy Ana Maria, Biosca Elena G., Castillo Jose A., Cellier Gilles, Coutinho Teresa A., Drenth André, Friman Ville-Petri, Genin Stéphane, Guidot Alice, Hikichi Yasufumi, Huang Qi, Iyer-Pascuzzi Anjali S., Kai Kenji, Pecrix Yann, Poussier Stéphane, Ray Jane D., Rossato Maurício, Schomer Rebecca, Siri Maria Inés, Vinatzer Boris A., Allen Caitilyn. 2023. PhytoFrontiers, 3 (4) : 761-766.

Rooting depth and xylem vulnerability are independent woody plant traits jointly selected by aridity, seasonality, and water table depth. Laughlin Daniel C., Siefert Andrew, Fleri Jesse R., Tumber-Dávila Shersingh Joseph, Hammond William M., Sabatini Francesco Maria, Damasceno Gabriella, Aubin Isabelle, Field Richard, Hatim Mohamed Z., Jansen Steven, Lenoir Jonathan, Lens Frederic, McCarthy James, Niinemets Ulo, Phillips Oliver L., Attorre Fabio, Bergeron Yves, Bruun Hans Henrik, Byun Chaeho, Ćušterevska Renata, Dengler Jürgen, De Sanctis Michele, Dolezal Jiri, Jiménez‐Alfaro Borja, Herault Bruno, Homeier Jürgen, Kattge Jens, Meir Patrick, Mencuccini Maurizio, Noroozi Jalil, Nowak Arkadiusz, Peñuelas Josep, Schmidt Marco, Skvorc Zeljko, Sultana Fahmida, Ugarte Rosina Magaña, Bruelheide Helge. 2023. New Phytologist, 240 (5):dossier Remote sensing : 1774-1787.

Suspicions of two bridgehead invasions of Xylella fastidiosa subsp. multiplex in France. Dupas Enora, Durand Karine, Rieux Adrien, Briand Martial, Pruvost Olivier, Cunty Amandine, Denancé Nicolas, Donnadieu Cecile, Legendre Bruno, Lopez-Roques Céline, Cesbron Sophie, Ravigné Virginie, Jacques Marie Agnès. 2023. Communications Biology, 6:103, 13 p.

Uncovering the endemic circulation of rabies in Cambodia. Layan Maylis, Dacheux Laurent, Lemey Philippe, Brunker Kirstyn, Ma Laurence, Troupin Cécile, Dussart Philippe, Chevalier Véronique, Wood James L.N., Ly Sowath, Duong Veasna, Bourhy Hervé, Dellicour Simon. 2023. Molecular Ecology, 32 (18) : 5140-5155.

Whole-genome sequences of Bipolaris bicolor, Curvularia hawaiiensis, Curvularia spicifera, and Exserohilum rostratum isolated from rice in Burkina Faso, France, Mali, and Pakistan. Kaboré Kouka Hilaire, Kassankogno Abalo Itolou, Adreit Henri, Ravel Sébastien, Charriat Florian, Diagne Diariatou, Lebrun Marc-Henri, Tharreau Didier. 2023. Mycology, 12 (11), 4 p.

The compact genome of the sponge Oopsacas minuta (Hexactinellida) is lacking key metazoan core genes. Santini Sébastien, Schenkelaars Quentin, Jourda Cyril, Duchesne Marc, Belahbib Hassiba, Rocher Caroline, Selva Marjorie, Riesgo Ana, Vervoort Michel, Leys Sally P., Kodjabachian Laurent, Le Bivic André, Borchiellini Carole, Claverie Jean-Michel, Renard Emmanuelle. 2023. BMC Biology, 21:139, 21 p.

The greater yam (Dioscorea alata L.): A review of its phytochemical content and potential for processed products and biofortification. Lebot Vincent, Lawac Floriane, Legendre Laurent. 2023. Journal of Food Composition and Analysis, 115:104987, 18 p.

A minisatellite-based MLVA for deciphering the global epidemiology of the bacterial cassava pathogen Xanthomonas phaseoli pv. manihotis. Rache Leidy, Blondin Laurence, Diaz Tatis Paula, Flores Carolina, Camargo Andrea, Kanté Moussa, Wonni Issa, López Camilo, Szurek Boris, Dupas Stéphane, Pruvost Olivier, Koebnik Ralf, Restrepo Silvia, Bernal Adriana Jimena, Vernière Christian. 2023. PloS One, 18 (5):e0285491, 16 p.

Ant phylogenomics reveals a natural selection hotspot preceding the origin of complex eusociality. Romiguier Jonathan, Borowiec Marek L., Weyna Arthur, Helleu Quentin, Loire Etienne, La Mendola Christine, Rabeling Christian, Fisher Brian L., Ward Philip S., Keller Laurent. 2022. Current Biology, 32 (13) : 2942-2947.

Association mapping of colour variation in a butterfly provides evidence that a supergene locks together a cluster of adaptive loci. Jay Paul, Leroy Manon, Le Poul Yann, Whibley Annabel, Arias Monica, Chouteau Mathieu, Joron Mathieu. 2022. Philosophical Transactions - Royal Society. Biological Sciences, 377 (1856), dossier Genomic architecture of supergenes: causes and evolutionary consequences, 14 p.

Characterization of peroxidase and laccase gene families and in silico identification of potential genes involved in upstream steps of lignan formation in sesame. Bovys Zoclanclounon Yedomon Ange, Rostás Michael, Chung Nam-Jin, Mo Youngjun, Karlovsky Petr, Dossa Komivi. 2022. Life, 12 (8), n.spéc. Research Advances in Plant Genomics: 2nd Edition:1200, 18 p.

Collection of native Theobroma cacao L. accessions from the Ecuadorian Amazon highlights a hotspot of cocoa diversity. Fouet Olivier, Loor Rey Gaston, Rhone Bénédicte, Subia Cristian, Calderón Darío, Fernández Fabián, Sotomayor Ignacio, Rivallan Ronan, Colonges Kelly, Vignes Hélène, Angamarca Freddy, Yaguana Byron, Costet Pierre, Argout Xavier, Lanaud Claire. 2022. Plants, People, Planet, 4 (6) : 605-617.

Ebenacobius Haran, a new southern African genus of flower weevils (Coleoptera: Curculioninae: Derelomini) associated with dicotyledonous plants. Haran Julien, Benoit Laure, Proches Serban, Kergoat Gael J.. 2022. European Journal of Taxonomy, 818 : 1-54.

Evidence of new strains of Wolbachia symbiont colonising semiaquatic bugs (Hemiptera: Gerroidea) in mangrove environment of the Lesser Antilles. Conjard Suzanne, Meyer Damien, Aprelon Rosalie, Pagès Nonito, Gros Olivier. 2022. PloS One, 17 (8):e0273668, 11 p.

From monocots to dicots: host shifts in Afrotropical derelomine weevils shed light on the evolution of non-obligatory brood pollination mutualism. Haran Julien, Proches Serban, Benoit Laure, Kergoat Gael J.. 2022. Biological Journal of the Linnean Society, 137 (1) : 15-29.

Fruit fly phylogeny imprints bacterial gut microbiota. Ravigné Virginie, Becker Nathalie, Massol François, Guichoux Erwan, Boury Christophe, Mahe Frédéric, Facon Benoît. 2022. Evolutionary Applications, 15 (10), n.spéc. Evolution in Agricultural Systems : 1621-1638.

Genome-wide characterization and identification of candidate ERF genes involved in various abiotic stress responses in sesame (Sesamum indicum L.). Su Ruqi, Dossou Senouwa Segla Koffi, Dossa Komivi, Zhou Rong, Liu Aili, Zhong Yanping, Fang Sheng, Zhang Xiurong, Wu Ziming, You Jun. 2022. BMC Plant Biology, 22:256, 13 p.

Identification of a novel vitivirus from pineapple in Reunion Island. Massé Delphine, Filloux Denis, Candresse Thierry, Massart Sébastien, Marals Armelle, Verdin Eric, Cassam Nathalie, Fernandez Emmanuel, Roumagnac Philippe, Teycheney Pierre-Yves, Lefeuvre Pierre, Lett Jean-Michel. 2022. Archives of Virology, 167 : 2355-2357.

Late Cenozoic environmental changes drove the diversification of a weevil genus endemic to the Cape Floristic Region. Hévin Noémie M.‐C., Hansen Steffan, Addison Pia, Benoit Laure, Kergoat Gael J., Haran Julien. 2022. Zoologica Scripta, 51 (6) : 724-740.

Molecular epidemiology of peste des petits ruminants virus in Nigeria: An update. Mantip Samuel, Sigismeau Anthony, Shamaki David, Woma Timothy Yusuf, Kwiatek Olivier, Libeau Geneviève, Farougou Souabou, Bataille Arnaud. 2022. Transboundary and Emerging Diseases, 69 (3) : 1634-1640.

Phylogenetic and taxonomic status of Citrus halimii B.C. Stone determined by genotyping complemented by chemical analysis of leaf and fruit rind essential oils. Luro François, Baccati Clémentine, Paoli Mathieu, Marchi Elodie, Costantino Gilles, Giberneau Marc, Ollitrault Patrick, Tomi Félix. 2022. Scientia Horticulturae, 299:111018, 10 p.

Phylogenetic reconstruction of the rainforest lineage Fontainea heckel (Euphorbiaceae) based on chloroplast DNA sequences and reduced-representation SNP Markers. Brunton Aaron J., Lamont Robert W., Conroy Gabriel C., Yap Samantha, Rossetto Maurizio, Taylor-Brown Alyce, Maggia Laurent, Reddell Paul, Ogbourne Steven M.. 2022. Diversity, 14 (9):725, 17 p.

Role of spike compensatory mutations in the interspecies transmission of SARS-CoV-2. Frutos Roger, Yahi Nouara, Gavotte Laurent, Fantini Jacques, Devaux Christian. 2022. One Health, 15:100429, 9 p.

Spodoptera littoralis genome mining brings insights on the dynamic of expansion of gustatory receptors in polyphagous noctuidae. Meslin Camille, Mainet Pauline, Montagné Nicolas, Robin Stéphanie, Legeai Fabrice, Bretaudeau Anthony, Johnston J Spencer, Koutroumpa Fotini, Persyn Emma, Monsempès Christelle, François Marie-Christine, Jacquin-Jolyb Emmanuelle. 2022. G3 - Genes Genomes Genetics, 12 (8):jkac131, 12 p.

Two viruses associated with mosaic symptoms in pandan grass (Pandanus amaryllifolius) in Florida. Alvarez-Quinto Robert A., Grinstead Samuel, Rott Philippe, Mollov Dimitre S.. 2022. Phytopathology, 112 (11S), suppl. Plant Health 2022, Résumé, S3.164 Plant Health 2022, Pittsburgh, États-Unis, 6 Août 2022/10 Août 2022.

Wild boars as reservoir of highly virulent clone of hybrid shiga toxigenic and enterotoxigenic Escherichia coli responsible for edema disease, France. Perrat Alexandre, Branchu Priscilla, Decors Anouk, Turci Silvia, Bayon-Auboyer Marie-Hélène, Petit Geoffrey, Grosbois Vladimir, Brugère Hubert, Auvray Frédéric, Oswald Eric. 2022. Emerging Infectious Diseases, 28 (2) : 382-393.

A curated dataset of peste des petits ruminants virus sequences for molecular epidemiological analyses. Baron Michael D., Bataille Arnaud. 2022. PloS One, 17 (2):e0263616, 22 p.

The innovation of the symbiosome has enhanced the evolutionary stability of nitrogen fixation in legumes. De Faria Sergio Miana, Ringelberg Jens J., Gross Eduardo, Koenen Erik J.M., Cardoso Domingos, Ametsitsi George K. D., Akomatey John, Maluk Marta, Tak Nisha, Gehlot Hukam S., Wright Kathryn M., Teaumroong Neung, Songwattana Pongpan, De Lima Haroldo C., Prin Yves, Zartman Charles Eugene, Sprent Janet I., Ardley Julie, Hughes Colin E., James Euan K.. 2022. New Phytologist, 235 (6) : 2365-2377.

A polyphasic approach reveals novel genotypes and updates the genetic structure of the banana fusarium wilt pathogen. Mostert Diane, Wicker Emmanuel, de Jager Mignon M., Al Kaabi Saif M., O'Neill Wayne, Perry Suzy, Li Chunyu, Ganyun Yi, Pegg Kenneth G., Mostert Lizel, Viljoen Altus. 2022. Microorganisms, 10 (2):269, 18 p.

Apport de l'ADN ancien dans l'étude de l'émergence et de l'évolution d'agents pathogènes de cultures. Campos Paola. 2021. Paris : MNHN, 224 p. Thèse de doctorat : Biologie des organismes. Phylogénétique, épidémiologie moléculaire, phytopathologie : Muséum national d'histoire naturelle

Badnaviruses and banana genomes: A long association sheds light on Musa phylogeny and origin. Chabannes Matthieu, Gabriel Marc, Aksa Abderrahmane, Galzi Serge, Dufayard Jean François, Iskra Caruana Marie-Line, Muller Emmanuelle. 2021. Molecular Plant Pathology, 22 (2) : 216-230.

Cacao swollen shoot virus (Caulimoviridae). Muller Emmanuelle. 2021. In : Encyclopedia of virology. Volume 3. Bamford Dennis (ed.), Zuckerman Mark (ed.). Oxford : Academic Press, 274-284. ISBN 978-0-12-814515-9

Characterization of odor-active compounds of Ichang lemon (Citrus wilsonii Tan.) and identification of its genetic interspecific origin by DNA genotyping. Demarcq Benoit, Cavailles Margaux, Lambert Laetitia, Schippa Christine, Ollitrault Patrick, Luro François. 2021. Journal of Agricultural and Food Chemistry, 69 (10) : 3175-3188.

Combining viral genetic and animal mobility network data to unravel peste des petits ruminants transmission dynamics in West Africa. Bataille Arnaud, Salami Habib, Seck Ismaïla, Lo Modou Moustapha, Ba Aminata, Diop Mariame, Sall Baba, Faye Coumba, Lo Mbargou, Kaba Lanceï, Sidime Youssouf, Keyra Mohamed, Diallo Alpha Oumar Sily, Niang Mamadou, Sidibé Cheick Abou Kounta, Sery Amadou, Dakouo Martin, El Mamy Ahmed Bezeid, El Arbi Ahmed Salem, Barry Yahya, Isselmou Ekaterina, Habiboullah Habiboullah, Lella Abdellahi Salem, Doumbia Baba, Baba Gueya Mohamed, Coste Caroline, Squarzoni Diaw Cécile, Kwiatek Olivier, Libeau Geneviève, Apolloni Andrea. 2021. PLoS Pathogens, 17 (3):e1009397, 23 p.

Contribution of historical herbarium small RNAs to the reconstruction of a cassava mosaic geminivirus evolutionary history. Rieux Adrien, Campos Paola, Duvermy Arnaud, Scussel Sarah, Martin Darren Patrick, Gaudeul Myriam, Lefeuvre Pierre, Becker Nathalie, Lett Jean-Michel. 2021. Scientific Reports, 11 (1):21280, 12 p.

Discriminating lineages of Batrachochytrium dendrobatidis using quantitative PCR. Ghosh Pria, Verster Ruhan, Sewell Thomas R., O'Hanlon Simon J., Brookes Lola M., Rieux Adrien, Garner Trenton W. J., Weldon Ché, Fisher Matthew C.. 2021. Molecular Ecology Resources, 21 (5) : 1452-1459.

Distribution, phylogeny, and pathogenicity of Xanthomonas albilineans causing sugarcane leaf scald in Mexico. Cervantes-Romero Benjamín, Pérez-Rodríguez Paulino, Rott Philippe, Valdez-Balero Apolonio, Osnaya-González Mónica, Robledo-Paz Alejandrina, Hernández-Juárez Camilo, Crossa José, Rosas-Saito Greta H., Silva-Rojas Hilda V.. 2021. Crop Protection, 150:105799, 9 p.

Entandrophragma: taxonomy and ecology of a genus of African tree species with economic importance. A review. Kasongo Yakusu Emmanuel, Monthe Franck, Bourland Nils, Hardy Olivier J., Louppe Dominique, Bola Mbele Lokanda Félicien, Hubau Wannes, Kahindo Muhongya Jean-Marie, Van den Bulcke Jan, Van Acker Joris, Beeckman Hans. 2021. Biotechnologie, Agronomie, Société et Environnement, 25 (3) : 140-153.

Extrachromosomal viral DNA produced by transcriptionally active endogenous viral elements in non-infected banana hybrids impedes quantitative PCR diagnostics of banana streak virus infections in banana hybrids. Ricciuti Emeline, Laboureau Nathalie, Noumbissié Guy, Chabannes Matthieu, Sukhikh Natalia, Pooggin Mikhail, Iskra Caruana Marie-Line. 2021. Journal of General Virology, 102 (11)

Free-living, psychrotrophic bacteria of the Genus Psychrobacter are descendants of pathobionts. Welter Daphne K., Ruaud Albane, Henseler Zachariah M., De Jong Hannah N., Van Coeverden de Groot Peter, Michaux Johan, Gormezano Linda, Waters Jillian L., Youngblut Nicholas D., Ley Ruth E.. 2021. mSystems, 6 (2), 20 p.

Genotyping-by-sequencing technology in plant taxonomy and phylogeny. Favre Félicien, Jourda Cyril, Besse Pascale, Charron Carine. 2021. In : Molecular plant taxonomy: method and protocols. Besse Pascale (ed.). New York : Humana Press, 167-178. (Methods in Molecular Biology, 2222) ISBN 978-1-0716-0996-5

Global range expansion history of pepper (Capsicum spp.) revealed by over 10,000 genebank accessions. Tripodi Pasquale, Rabanus-Wallace Mark Timothy, Barchi Lorenzo, Kale Sandip, Esposito Salvatore, Acquadro Alberto, Schafleitner Roland, Van Zonneveld Maarten, Prohens Jaime, Diez Maria José, Börner Andreas, Salinier Jérémy, Caromel Bernard, Bovy Arnaud, Boyaci Filiz, Pasev Gancho, Brandt Ronny, Himmelbach Axel, Portis Ezio, Finkers Richard, Lanteri Sergio, Paran Ilan, Lefebvre Véronique, Giuliano Giovanni, Stein Nils. 2021. Proceedings of the National Academy of Sciences of the United States of America, 118 (34):e2104315118, 9 p.

GreenPhylDB v5: A comparative pangenomic database for plant genomes. Guignon Valentin, Toure Abdel, Droc Gaëtan, Dufayard Jean François, Conte Matthieu, Rouard Mathieu. 2021. Nucleic Acids Research, 49 (D1) : D1464-D1471.

Identification, molecular and biological characterization of two novel secovirids in wild grass species in Belgium. Maclot François, Debue Virginie, Blouin Arnaud G., Fontdevilla Pareta Núria, Tamisier Lucie, Filloux Denis, Massart Sébastien. 2021. Virus Research, 298:198397, 6 p.

Identifying potential candidate Culicoides spp. for the study of interactions with Candidatus Cardinium hertigii. Pilgrim Jack, Siozios S., Baylis Matthew, Venter Gert J., Garros Claire, Hurst Gregory D.D.. 2021. Medical and Veterinary Entomology, 35 : 501-506.

Kinship networks of seed exchange shape spatial patterns of plant virus diversity. Delêtre Marc, Lett Jean-Michel, Sulpice Ronan, Spillane Charles. 2021. Nature Communications, 12 (1), 10 p.

Molecular epidemiology of peste des petits ruminants virus emergence in critically endangered Mongolian saiga antelope and other wild ungulates. Benfield Camilla T.O., Hill Sarah, Shatar Munkduuren, Shiilegdamba Enkhtuvshin, Damdinjav Batchuluun, Fine Amanda, Willett Brian J., Kock Richard, Bataille Arnaud. 2021. Virus Evolution, 7 (2), 14 p.

New world cactaceae plants harbor diverse geminiviruses. Fontenele Rafaela S, Salywon Andrew M., Majure Lucas C., Cobb Ilaria N., Bhaskara Amulya, Avalos‐Callero Jesús A., Argüello‐Astorga Gerardo R., Schmidlin Kara, Khalifeh Anthony, Smith Kendal, Schreck Joshua, Lund Michael, Köhler Matias, Wojciechowski Martin, Hodgson Wendy C., Puente‐Martinez Raul, Van Doorslaer Koenraad, Kumari Safaa G., Oyeniran Kehinde A., Vernière Christian, Filloux Denis, Roumagnac Philippe, Lefeuvre Pierre, Ribeiro Simone G., Kraberger Simona, Martin Darren Patrick, Varsani Arvind. 2021. Viruses, 13 (4):694, 27 p.

Novel circular DNA virus identified in Opuntia discolor (Cactaceae) that codes for proteins with similarity to those of geminiviruses. Fontenele Rafaela S, Köhler Matias, Majure Lucas C., Avalos‐Callero Jesús A., Argüello‐Astorga Gerardo R., Font Fabián, Vidal Andreza H., Roumagnac Philippe, Kraberger Simona, Martin Darren Patrick, Lefeuvre Pierre, Varsani Arvind. 2021. Journal of General Virology, 102 (11), 7 p.

RapGreen, an interactive software and web package to explore and analyze phylogenetic trees. Dufayard Jean François, Bocs Stéphanie, Guignon Valentin, Larivière Delphine, Louis Alexandra, Oubda Nicolas, Rouard Mathieu, Ruiz Manuel, De Lamotte Frédéric. 2021. NAR Genomics and Bioinformatics, 3 (3):lqab088, 6 p.

Taxonomy update for the family Alphasatellitidae: New subfamily, genera, and species. Varsani Arvind, Martin Darren Patrick, Randles John W., Vetten H. Josef, Thomas John, Fiallo-Olivé Elvira, Navas-Castillo Jesús, Lett Jean-Michel, Zerbini F. Murilo, Roumagnac Philippe, Gronenborn Bruno. 2021. Archives of Virology, 166 : 3503-3511.

Temperature and pH define the realized niche space of arbuscular mycorrhizal fungi. Davison John, Moora Mari, Semchenko Marina, Binte Adenan Sakeenah, Ahmed Talaat, Akhmetzhanova Asem A., Atalalo Juha M., Al-Quraishy Saleh, Andriyanova Elena, Anslan Sten, Bahram Mohammad, Batbaatar Amgaa, Brown Charlotte, Bueno C. Guillermo, Cahill James, Cantero Juan José, Casper Brenda B., Cherosov Mikhail, Chideh Saida, Coelho Ana P., Coghill Matthew, Decocq Guillaume, Dudov Sergey, Fabiano Ezequiel Chimbioputo, Fedosov Vladimir E., Fraser Lauchlan, Glassman Sydney I., Helm Aveliina, Henry Hugh A.L., Herault Bruno, et al.. 2021. New Phytologist, 231 (2) : 763-776.

Time-calibrated genomic evolution of a monomorphic bacterium during its establishment as an endemic crop pathogen. Richard Damien, Pruvost Olivier, Balloux François, Boyer Claudine, Rieux Adrien, Lefeuvre Pierre. 2021. Molecular Ecology, 30 (8) : 1823-1835.

Tracing the origin and evolutionary history of Pyricularia oryzae infecting maize and barnyard grass. Pordel Adel, Ravel Sébastien, Charriat FLorian, Gladieux Pierre, Cros-Arteil Sandrine, Milazzo Joëlle, Adreit Henri, Javan-Nikkhah Mohammad, Mirzadi Gohari Amir, Moumeni Ali, Tharreau Didier. 2021. Phytopathology, 111 (1), n.spéc. : 128-136.

Ultra-conserved elements and morphology reciprocally illuminate conflicting phylogenetic hypotheses in Chalcididae (Hymenoptera, Chalcidoidea). Cruaud Astrid, Delvare Gérard, Nidelet Sabine, Sauné Laure, Ratnasingham Sujeevan, Chartois Marguerite, Blaimer Bonnie B., Gates Michael W., Brady Seán G., Faure Sariana, Van Noort Simon, Rossi Jean-Pierre, Rasplus Jean-Yves. 2021. Cladistics, 37 (1) : 1-35.

The complete chloroplast genome of Artocarpus altilis (Moraceae) and phylogenetic relationships. Borges de Souza Ueric José, dos Santos Raíssa Nunes, de Araújo Filho Renisson Neponuceno, dos Santos Gil Rodrigues, Almeida Sarmento Renato, De Bellis Fabien, Campos Fabrício Souza. 2021. Mitochondrial DNA. Part B. Resources, 6 (8) : 2291-2293.

The leguminous trees Vachellia seyal (Del.) and Prosopis juliflora (Swartz) DC and their association with rhizobial strains from the root-influence zone of the grass Sporobolus robustus Kunth. Fall Fatoumata, Le Roux Christine, Bâ Amadou Moustapha, Fall Dioumacor, Bakhoum Niokhor, Faye Mathieu Ndigue, Sadio Oumar, Diouf Diégane. 2021. Symbiosis, 84 : 61-69.

metaXplor: An interactive viral and microbial metagenomic data manager. Sempere Guilhem, Petel Adrien, Abbé Magsen, Lefeuvre Pierre, Roumagnac Philippe, Mahé Frédéric, Baurens Gaël, Filloux Denis. 2021. GigaScience, 10 (2):giab001 : 1-8.

Distinct barcodes for the Cereal leaf beetles Oulema melanopus and Oulema duftschmidi (Coleoptera: Chrysomelidae), two syntopical sibling species. Leroy Julie, Chapelin-Viscardi Jean-David, Genson Gwenaëlle, Haran Julien, Pierre Eric, Streito Jean-Claude. 2020. European Journal of Entomology, 117 : 490-503.

Genetic origins and diversity of bushpigs from Madagascar (Potamochoerus larvatus, family Suidae). Lee Carol, Day Jenna, Goodman Steven M., Pedrono Miguel, Besnard Guillaume, Frantz Laurent, Taylor Peter J., Herrera Michael J., Gongora Jaime. 2020. Scientific Reports, 10:20629, 18 p.

Genomic acquisitions in emerging populations of Xanthomonas vasicola pv. vasculorum infecting corn in the United States and Argentina. Pérez-Quintero Alvaro L., Ortiz-Castro Mary, Lang Jillian M., Rieux Adrien, Wu Guangxi, Liu Sanzhen, Chapman Toni A., Chang Christine, Ziegle Janet, Peng Zhao, White Frank F., Plazas Maria Cristina, Leach Jan E., Broders Kirk. 2020. Phytopathology, 110 (6) : 1161-1173.

Large-scale survey reveals pervasiveness and potential function of endogenous geminiviral sequences in plants. Sharma Vikas, Lefeuvre Pierre, Roumagnac Philippe, Filloux Denis, Teycheney Pierre-Yves, Martin Darren Patrick, Maumus Florian. 2020. Virus Evolution, 6 (2):veaa071, 13 p.

Multilocus phylogeography of the world populations of Elaeidobius kamerunicus (Coleoptera, Curculionidae), pollinator of the palm Elaeis guineensis. Haran Julien, Ndzana Abanda Raphaël François Xavier, Benoit Laure, Bakoumé Claude, Beaudoin-Ollivier Laurence. 2020. Bulletin of Entomological Research, 110 (5) : 654-662.

Origin and diversity of plant receptor-like kinases. Diévart Anne, Gottin Celine, Périn Christophe, Ranwez Vincent, Chantret Nathalie. 2020. Annual Review of Plant Biology, 71 : 131-156.

RNA viruses of Amblyomma variegatum and Rhipicephalus microplus and cattle susceptibility in the French Antilles. Gondard Mathilde, Temmam Sarah, Devillers Elodie, Pinarello Valérie, Bigot Thomas, Chrétien Delphine, Aprelon Rosalie, Vayssier-Taussat Muriel, Albina Emmanuel, Eloit Marc, Moutailler Sara. 2020. Viruses, 12:144, 23 p.

Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles. Gluck-Thaler E., Cerutti Aude, Pérez-Quintero Alvaro L., Butchacas Jules, Roman-Reyna Verónica, Madhavan Vishnu Narayanan, Shantharaj Deepak, Merfa Marcus V., Pesce Céline, Jauneau Alain, Vancheva T., Lang Jillian M., Allen Caitilyn, Verdier Valérie, Gagnevin Lionel, Szurek Boris, Beckham Gregg T., De La Fuente Leonardo, Patel Hitendra Kumar, Sonti Ramesh V., Bragard Claude, Leach Jan E., Noel Laurent D., Slot J., Koebnik Ralf, Jacobs Jonathan M.. 2020. Science Advances, 6 (46), 10 p.

Screening diversity and distribution of Copia retrotransposons reveals a specific amplification of BARE1 elements in genomes of the polyploid Hordeum murinum complex. Ourari Malika, Coriton Olivier, Martin Guillaume, Huteau Virginie, Keller Jean, Ainouche Malika Lily, Amirouche Rachid, Ainouche Abdelkader. 2020. Genetica, 148 (2) : 109-123.

Sugarcane genome architecture decrypted with chromosome-specific oligo probes. Piperidis Nathalie, D'Hont Angélique. 2020. Plant Journal, 103 (6) : 2039-2051.

Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization. Temmam Sarah, Hul Vibol, Bigot Thomas, Bessaud Maël, Chrétien Delphine, Hoem Thavry, Gorman Christopher, Duong Veasna, Dussart Philippe, Cappelle Julien, Eloit Marc. 2020. Infection, Genetics and Evolution, 78:104130, 5 p.

Yam asymptomatic virus 1, a novel virus infecting yams (Dioscorea spp.) with significant prevalence in a germplasm collection. Marais Armelle, Umber Marie, Filloux Denis, Gomez Rose-Marie, Faure Chantal, Pavis Claudie, Julian Charlotte, Roumagnac Philippe, Acina Manbole Isabelle Nina, Bonheur Lydiane, Theil Sébastien, Contreras Sandy, Candresse Thierry, Teycheney Pierre-Yves. 2020. Archives of Virology, 165 : 2653-2657.

A first phylogenomic hypothesis for Eulophidae (Hymenoptera, Chalcidoidea). Rasplus Jean-Yves, Blaimer Bonnie B., Brady Seán G., Burks Roger A., Delvare Gérard, Fisher Nicole, Gates Michael W., Gauthier Nathalie, Gumovsky Alex, Hansson Christer, Heraty John M., Fusu Lucian, Nidelet Sabine, Pereira Rodrigo A.S., Sauné Laure, Ubaidillah Rosichon, Cruaud Astrid. 2020. Journal of Natural History, 54 (9-12) : 597-609.

The genus Phasgonophora Westwood, 1832 (Hymenoptera, Chalcididae) in Saudi Arabia: Re-evaluation of its limits and description of three new species. Gul Muhammad Athar, Soliman Ahmed Mostafa, Gadallah Neveen Samy, Al Dhafer Hathal Mohammed, Delvare Gérard. 2020. Journal of Hymenoptera Research, 76 : 1-38.

The hyperdominant tropical tree Eschweilera coriacea (Lecythidaceae) shows higher genetic heterogeneity than sympatric Eschweilera species in French Guiana. Heuertz Myriam, Caron Henri, Scotti-Saintagne Caroline, Petronelli Pascal, Engel Julien, Tysklind Niklas, Miloudi Sana, Gaiotto Fernanda Amato, Chave Jérôme, Molino Jean-François, Sabatier Daniel, Loureiro João, Budde Katharina B.. 2020. Plant Ecology and Evolution, 153 (1) : 67-81.

A phylogenetic analysis of the biting midges belonging to Culicoides Latreille (Diptera: Ceratopogonidae) subgenus Avaritia using molecular data. Mathieu Bruno, Garros Claire, Balenghien Thomas, Candolfi Ermanno, Delecolle Delphine, Cetre-Sossah Catherine. 2020. Parasites and Vectors, 13:243, 12 p.

The tree that hides the forest: cryptic diversity and phylogenetic relationships in the Palaearctic vector Obsoletus/Scoticus Complex (Diptera: Ceratopogonidae) at the European level. Mignotte Antoine, Garros Claire, Gardes Laëtitia, Balenghien Thomas, Duhayon Maxime, Rakotoarivony Ignace, Tabourin Laura, Poujol Léa, Mathieu Bruno, Ibáñez-Justicia Adolfo, Deniz Ahmet, Cvetkovikj Aleksandar, Purse Bethan V., Ramilo David, et al.. 2020. Parasites and Vectors, 13:265, 13 p.

A whole-genome worldwide molecular epidemiology approach for contagious caprine pleuropneumonia. Loire Etienne, Issa Ibrahim Abdoulkarim, Manso-Silvan Lucia, Lignereux Louis, Thiaucourt François. 2020. Heliyon, 6:e05146, 7 p.

A52 MERS coronaviruses from camels in Africa exhibit region-dependent genetic diversity. Chu Daniel K.W., Hui Kenrie P.Y., Perera Ranawaka A.P.M., Miguel Eve, Oladipo J.O., Traore A., Fassi-Fihri Ouafaa, Chan Michael C.W., Zhou Ziqi, So Ray T.Y., Chevalier Véronique, Peiris J.S.M.. 2019. Virus Evolution, 5, suppl. 1:vez002.051, S16

Bayesian evolution analyses suggests the global spread of Xanthomonas cynarae pv. gardneri occurred during the global adoption of hybrid tomato seed. Jibrin Mustafa O., Potnis Neha, Timilsina Sujan, Minsavage Gerald V., Shutt V.M., Coutinho Teresa A., Pruvost Olivier, Siri M.I., Pianzzola M.J., Quezado Duval Art M., Nikolaeva Ekaterina V., Egel Daniel S., Creswell Tom, Ruhl Gail E., Maynard Lystranne, Gulig P., Vallad Gary E., Roberts Pamela D., Goss Erica, Jones Jeffrey B.. 2019. Phytopathology, 109 (10S), suppl. Plant Health 2019, Résumé : 141-142. American Phytopathological Society 2019 Annual Meeting, Cleveland, États-Unis, 3 Août 2019/7 Août 2019.

Changing ecological opportunities facilitated the explosive diversification of New Caledonian Oxera (Lamiaceae). Barrabé Laure, Lavergne Sébastien, Karnadi-Abdelkader Giliane, Drew Bryan T., Birnbaum Philippe, Gâteblé Gildas. 2019. Systematic Biology, 68 (3) : 460-481.

Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its sequence–structure–function analysis. Fleury Cécile, Gracy Jérôme, Gautier Marie-Françoise, Pons Jean-Luc, Dufayard Jean François, Labesse Gilles, Ruiz Manuel, De Lamotte Frédéric. 2019. PeerJ, 7:e7504, 34 p.

Disentangling the role of Africa in the global spread of H5 highly pathogenic avian influenza. Fusaro Alice, Zecchin Bianca, Vrancken Bram, Abolnik Célia, Ademun Rose, Alassane Abdou, Arafa Abdelsatar, Awuni Joseph Adongo, Couacy-Hymann Emmanuel, Coulibaly M.' Bétiégué, Gaidet Nicolas, Go-Maro Emilie, Joannis Tony M., Jumbo Simon Dickmu, Minoungou Germaine, Meseko Clement, Souley Maman Moutari, Ndumu Deo Birungi, Shittu Ismaila, Twabela Augustin, Wade Abel, Wiersma Lidewij, Akpeli Yao P., Zamperin Gianpiero, Milani Adelaide, Lemey Philippe, Monne Isabella. 2019. Nature Communications, 10:5310, 13 p.

Effector profiles of Xanthomonas perforans and X. euvesicatoria provide insights into the evolution of host range and virulence in BLS pathogens. Iruegas-Bocardo Fernanda, Timilsina Sujan, Jibrin Mustafa O., Minsavage Gerald V., Abrahamian Peter, Egel Daniel S., Creswell Tom, Miller Sydney, Rotondo Francesca, Louws Frank John, Adhikari Tushar, Trueman Cheryl L., Roach Rebecca, Coutinho Teresa A., Pruvost Olivier, Nga Nguyen Thi Thu, Luo Laixin, Kebede Misrak, Potnis Neha, Vallad Gary E., Jones Jeffrey B., Goss Erica. 2019. Phytopathology, 109 (10S), suppl. Plant Health 2019, Résumé : 21-22. American Phytopathological Society 2019 Annual Meeting, Cleveland, États-Unis, 3 Août 2019/7 Août 2019.

Genetic diversity of rhizobia associated with root nodules of white lupin (Lupinus albus L.) in Tunisian calcareous soils. Tounsi-Hammami Soumaya, Le Roux Christine, Dhane-Fitouri Sana, De Lajudie Philippe, Duponnois Robin, Ben Jeddi Faysal. 2019. Systematic and Applied Microbiology, 42 (4) : 448-456.

Genetic evidence for transboundary circulation of Peste Des Petits Ruminants across West Africa. Tounkara Kadidia, Kwiatek Olivier, Niang Mamadou, Sidibé Cheick Abou Kounta, Sery Amadou, Dakouo Martin, Salami Habib, Lo Modou Moustapha, Ba Aminata, Diop Mariame, El Mamy Ahmed Bezeid, El Arbi Ahmed Salem, Barry Yahya, Isselmou Ekaterina, Habiboullah Habiboullah, Lella Abdellahi Salem, Doumbia Baba, Baba Gueya Mohamed, Savadogo Joseph, Ouattara Lassina, Minougou Germaine, Libeau Geneviève, Bataille Arnaud. 2019. Frontiers in Veterinary Science, 6:275, 7 p.

Genetic, morphological and chemical investigations reveal the genetic origin of Pompia (C. medica tuberosa Risso & Poiteau) - An old endemic Sardinian citrus fruit. Luro François, Viglietti Grazia, Marchi Elodie, Costantino Gilles, Scarpia Maria Grazia, Tomi Félix, Paoli Mathieu, Curk Franck, Ollitrault Patrick. 2019. Phytochemistry, 168:112083, 10 p.

Genome-wide analysis of the barley non-specific lipid transfer protein gene family. Zhang Mengyue, Kim Yujin, Zong Jie, Lin Hong, Diévart Anne, Li Huanjun, Zhang Dabing, Liang Wanqi. 2019. Crop Journal, 7 (1) : 65-76.

Genomic diversity and recombination among Xylella fastidiosa subspecies. Vanhove Mathieu, Retchless Adam C., Sicard Anne, Rieux Adrien, Coletta-Filho Helvécio D, De La Fuente Leonardo, Stenger Drake C., Almeida Rodrigo P.P.. 2019. Applied and Environmental Microbiology, 85 (13):e02972-18, 17 p.

Genotyping by sequencing can reveal the complex mosaic genomes in gene pools resulting from reticulate evolution: a case study in diploid and polyploid citrus. Ahmed Dalel, Comte Aurore, Curk Franck, Costantino Gilles, Luro François, Dereeper Alexis, Mournet Pierre, Froelicher Yann, Ollitrault Patrick. 2019. Annals of Botany, 123 (7) : 1231-1251.

HVA22 from citrus: A small gene family whose some members are involved in plant response to abiotic stress. Gomes Ferreira Monique Drielle, Araújo Castro Jacqueline, Santana Silva Raner José, Micheli Fabienne. 2019. Plant Physiology and Biochemistry, 142 : 395-404.

Identification de gènes impliqués dans la régulation de la mise en place de la paroi secondaire chez le sorgho. Hennet Lauriane. 2019. Montpellier : Université de Montpellier, 332 p. Thèse de doctorat : Agronomie : Université de Montpellier

Identification of Eilat virus and prevalence of infection among Culex pipiens L. populations, Morocco, 2016. Bennouna Amal, Gil Patricia, El Rhaffouli Hicham, Exbrayat Antoni, Loire Etienne, Balenghien Thomas, Chlyeh Ghita, Gutierrez Serafin, Fassi-Fihri Ouafaa. 2019. Virology, 530 : 85-88.

Microévolution et adaptation à une pression de sélection anthropique chez Xanthomonas citri pv. citri, une bactérie pathogène des agrumes : dynamique du compartiment plasmidique. Richard Damien. 2019. Saint-Denis : Université de la Réunion, 275 p. Thèse de doctorat : Sciences. Génomique, épidémiologie moléculaire, phytopathologie, bactériologie : Université de la Réunion

Molecular detection and phylogenetic analysis of Peste des petits ruminants virus circulating in small ruminants in eastern Amhara region, Ethiopia. Alemu Biruk, Gari Getachew, Libeau Geneviève, Kwiatek Olivier, Kidane Menbere, Belayneh Rediet, Siraw Bewuket, Wieland Barbara, Asfaw Wondwoson, Abdi Reta D.. 2019. BMC Veterinary Research, 15:84, 9 p.

Pervasive hybridizations in the history of wheat relatives. Glemin Sylvain, Scornavacca Céline, Dainat Jacques, Burgarella Concetta, Viader Véronique, Ardisson Morgane, Sarah Gautier, Santoni Sylvain, David Jacques, Ranwez Vincent. 2019. Science Advances, 5 (5), 10 p.

Phylogenetic origin of primary and secondary metabolic pathway genes revealed by C. maxima and C. reticulata diagnostic SNPs. Do Amaral Santos Milena, Barbosa de Paula Márcia Fabiana, Ollitrault Frédérique, Rivallan Ronan, De Andrade Silva Edson Mario, Da Silva Gesteira Abelmon, Luro François, Garcia Dominique, Ollitrault Patrick, Micheli Fabienne. 2019. Frontiers in Plant Science, 10:1128, 15 p.

Phylogenetic relationships in two African Cedreloideae tree genera (Meliaceae) reveal multiple rain/dry forest transitions. Monthe Franck, Migliore Jérémy, Duminil Jérôme, Bouka Gaël, Demenou Boris B., Doumenge Charles, Blanc-Jolivet Céline, Ekué Marius Rodrigue Mensah, Hardy Olivier J.. 2019. Perspectives in Plant Ecology, Evolution and Systematics, 37 : 1-10.

Plasmodium vivax malaria viewed through the lens of an eradicated european strain. van Dorp Lucy, Gelabert Pere, Rieux Adrien, de Manuel Marc, de-Dios Toni, Gopalakrishnan Shyam, Caroe christian, Sandoval-Velasco Marcela, Fregel Rosa, Olalde Iñigo, Escosa Raül, Aranda Carles, Huijben Silvie, Mueller Ivo, Marquès-Bonet Tomàs, Balloux François, Gilbert M. Thomas P., Lalueza-Fox Carles. 2019. Molecular Biology and Evolution, 37 (3) : 773-785.

Biophysical dependences among functional wood traits. Dlouha Jana, Alméras Tancrède, Beauchêne Jacques, Clair Bruno, Fournier Meriem. 2018. Functional Ecology, 32 (12) : 2652-2665.

Caracterización de Phytophthora, agente etiológico de la pudrición negra de la mazorca del cacao en Cuba y Guyana Francesa. Fernández Maura Yurelkys, Lachenaud Philippe, Decock Cony, Díaz Rodríguez Amauri, Abreu Romero Noryaisi. 2018. Centro Agrícola, 45 (3) : 17-26.

Circulation of Alphacoronavirus, Betacoronavirus and Paramyxovirus in Hipposideros bat species in Zimbabwe. Bourgarel Mathieu, Pfukenyi Davies Mubika, Boué Vanina, Talignani Loïc, Chiweshe Ngoni, Diop Fodé, Caron Alexandre, Matope Gift, Missé Dorothée, Liégeois Florian. 2018. Infection, Genetics and Evolution, 58 : 253-257.

First genetic characterization of Peste des Petits Ruminants from Niger: On the advancing front of the Asian virus lineage. Tounkara Kadidia, Bataille Arnaud, Adombi Caroline Mélanie, Maikano Issoukou, Djibo Gamatié, Settypalli Tirumala Bharani Kumar, Loitsch Angelika, Diallo Adama, Libeau Geneviève. 2018. Transboundary and Emerging Diseases, 65 (5) : 1145-1151.

Genomics of the origin and evolution of Citrus. Wu Guohong Albert, Terol Javier F., Ibáñez Victoria, López-García Antonio, Pérez-Román Estela, Borredá Carles, Domingo Concha, Tadeo Francisco, Carbonell-Caballero Jose, Alonso Roberto, Curk Franck, Du Dongliang, Ollitrault Patrick, Roose Mikeal L., Dopazo Joaquin, Gmitter Frederick G., Rokhsar Daniel S., Talon Manuel. 2018. Nature, 554 (7692) : 311-136.

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. Bernardo Pauline, Charles-Dominique Tristan, Barakat Mohamed, Ortet Philippe, Fernandez Emmanuel, Filloux Denis, Hartnady Penelope, Rebelo Tony A., Cousins Stephen, Mesleard François, Cohez Damien, Yaverkovski Nicole, Varsani Arvind, Harkins Gordon William, Peterschmitt Michel, Malmstrom Carolyn, Martin Darren Patrick, Roumagnac Philippe. 2018. ISME Journal, 12 : 174-184.

Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean. Chen Nicolas W.G., Serres-Giardi Laurana, Ruh Mylène, Briand Martial, Bonneau Sophie, Darrasse Armelle, Barbe Valérie, Gagnevin Lionel, Koebnik Ralf, Jacques Marie Agnès. 2018. BMC Genomics, 19:606, 20 p.

Identification of Peste des Petits Ruminants Virus, Georgia, 2016. Donduashvili Marina, Goginashvili Ketevan, Toklikishvili Natela, Tigilauri Tamar, Gelashvili Lamara, Avaliani Lasha, Khartskhia Natia, Loitsch Angelika, Bataille Arnaud, Libeau Geneviève, Diallo Adama, Dundon William G.. 2018. Emerging Infectious Diseases, 24 (8) : 1576-1578.

MERS coronaviruses from camels in Africa exhibit region-dependent genetic diversity. Chu Daniel K.W., Hui Kenrie P.Y., Perera Ranawaka A.P.M., Miguel Eve, Niemeyer Daniela, Zhao Jincun, Channappanavar Rudragouda, Dudas Gytis, Oladipo Jamiu O., Traoré Amadou, Fassi-Fihri Ouafaa, Ali Abraham, Demissie Getnet Fekadu, Muth Doreen, Chan Michael C.W., Nicholls John M., Meyerholz David K., Kuranga Sulyman A., Mamo Gezahegne, Zhou Ziqi, So Ray T.Y., Hemida Maged G., Webby Richard J., Roger François, Rambaut Andrew, Poon Leo L.M., Perlman Stanley, Drosten Christian, Chevalier Véronique, Peiris Malik. 2018. Proceedings of the National Academy of Sciences of the United States of America, 115 (12) : 3144-3149.

Molecular epidemiology of bacterial wilt in the Madagascar highlands caused by Andean (Phylotype IIB-1) and African (Phylotype III) brown rot strains of the Ralstonia solanacearum species complex. Ravelomanantsoa Santatra, Vernière Christian, Rieux Adrien, Costet Laurent, Chiroleu Frédéric, Arribat Sandrine, Cellier Gilles, Pruvost Olivier, Poussier Stéphane, Robène Isabelle, Guérin Fabien, Prior Philippe. 2018. Frontiers in Plant Science, 8:2258, 17 p.

Next generation sequencing elucidates cacao badnavirus diversity and reveals the existence of more than ten viral species. Muller Emmanuelle, Ravel Sébastien, Agret Clément, Abrokwah Francis, Dzahini-Obiatey Henry, Galyuon I., Kouakou K., Jeyaseelan E.C., Allainguillaume Joel, Wetten Andrew. 2018. Virus Research, 244 : 235-251.

Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium Treponema pallidum subsp. pertenue. Knauf Sascha, Gogarten Jan F., Schuenemann Verena J., De Nys Hélène, Düx Ariane, Strouhal Michal, Mikalová Lenka, Bos Kirsten I., Armstrong Roy, Batamuzi Emmanuel K., Chuma Idrissa S., Davoust Bernard, Diatta Georges, Fyumagwa Robert, Kazwala Reuben R., Keyyu Julius, Lejora Inyasi A. V., Levasseur Anthony, Liu Hsi, Mayhew Michael A., Mediannikov Oleg, Raoult Didier, Wittig Roman M., Roos Christian, Leendertz Fabian Hubertus, Smajs David, Nieselt Kay, Krause Johannes, Calvignac-Spencer Sébastien. 2018. Emerging Microbes and Infections, 7 (1) : 1-4.

Phylogenetic diversity of Bradyrhizobium strains nodulating Calicotome spinosa in the Northeast of Algeria. Salmi Adouda, Boulila Farida, Bourebaba Yasmina, Le Roux Christine, Belhadi Djellali, De Lajudie Philippe. 2018. Systematic and Applied Microbiology, 41 : 452-459.

Phylogeography of Monochamus galloprovincialis, the European vector of the pinewood nematode. Haran Julien, Rousselet Jérôme, Tellez David, Roques Alain, Roux Géraldine. 2018. Journal of Pest Science, 91 (1) : 241-257.

Présence sur l'île de La Réunion de deux espèces de Punaises prédatrices potentiellement utilisables pour la lutte biologique : Orius naivashae et Cyrtopeltis callosus (Hemiptera, Anthocoridae et Miridae). Streito Jean-Claude, Fontaine Olivier, Atiama Morguen, Genson Gwenaëlle, Pierre Eric, Sadeyen Joëlle, Frago Enric, Nibouche Samuel. 2018. Bulletin de la Société Entomologique de France, 123 (1) : 29-42.

Sequevar diversity and virulence of Ralstonia solanacearum phylotype I on Mayotte Island (Indian Ocean). Chesneau Thomas, Maignien Géraldine, Boyer Claudine, Cheron Jean-Jacques, Roux Cuvelier Michel, Vanhuffel Luc, Poussier Stéphane, Prior Philippe. 2018. Frontiers in Plant Science, 8:2209, 10 p.

Three new genome assemblies support a rapid radiation in Musa acuminata (wild banana). Rouard Mathieu, Droc Gaëtan, Martin Guillaume, Sardos Julie, Hueber Yann, Guignon Valentin, Cenci Alberto, Geigle B., Hibbins M.S., Yahiaoui Nabila, Baurens Franc-Christophe, Berry Vinvent, Hahn M.W., D'Hont Angélique, Roux Nicolas. 2018. Genome Biology and Evolution, 10 (12) : 3129-3140.

Torymidae (Hymenoptera, Chalcidoidea) revised: Molecular phylogeny, circumscription and reclassification of the family with discussion of its biogeography and evolution of life-history traits. Jansta Peter, Cruaud Astrid, Delvare Gérard, Genson Gwenaëlle, Heraty John M., Krizkova Barbora, Rasplus Jean-Yves. 2018. Cladistics, 34 (6) : 627-651.

Why are woody plants fleshy‐fruited at low elevations? Evidence from a high‐elevation oceanic island. Albert Sébastien, Flores Olivier, Rouget Mathieu, Wilding Nicholas, Strasberg Dominique. 2018. Journal of Vegetation Science, 29 (5) : 847-858.

A15 Rapid radiation of treponema pallidum pertenue in wild non-human primates. Düx Ariane, Schuenemann Verena J., Gogarten Jan F., De Nys Hélène, Nieselt Kay, Mayhew Michael A., Leendertz Fabian Hubertus, Calvignac-Spencer Sébastien, Krause Johannes. 2017. Virus Evolution, 3, suppl. 1 : p. 56. International Bioinformatics Workshop on Virus Evolution and Molecular Epidemiology (VEME). 21, Séoul, 14 Août 2016/16 Septembre 2016.

Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. Osb. Araújo Castro Jacqueline, Drielle Gomes Ferreira Monique, Santana Silva Raner José, Andrade Bruno Silva, Micheli Fabienne. 2017. PloS One, 12 (5):e0176878, 17 p.

Capulavirus and Grablovirus: Two new genera in the family Geminiviridae. Varsani Arvind, Roumagnac Philippe, Fuchs Marc, Navas-Castillo Jesús, Moriones Enrique, Idris Ali, Briddon Rob W., Rivera-Bustamante Rafael, Zerbini F. Murilo, Martin Darren Patrick. 2017. Archives of Virology, 162 (6) : 1819-1831.

Changes in anthocyanin production during domestication of Citrus. Butelli Eugenio, Garcia-Lor Andrés, Licciardello Concetta, Las Casas Giuseppina, Hill Lionel, Reforgiato Giuseppe, Keremane Manjunath, Ramadugu Chandrika, Krueger Robert, Xu Qiang, Deng Xiuxin, Fanciullino Anne Laure, Froelicher Yann, Navarro Luis, Martin Cathie. 2017. Plant Physiology, 173 (4) : 2225-2242.

Changes in phytophagous insect host ranges following the invasion of their community: Long-term data for fruit flies. Charlery De La Masseliere Maud, Ravigné Virginie, Facon Benoît, Lefeuvre Pierre, Massol François, Quilici Serge, Duyck Pierre François. 2017. Ecology and Evolution, 7 (14) : 5181-5190.

Comparative analysis of spatial genetic structure in an ant-plant symbiosis reveals a tension zone and highlights speciation processes in tropical Africa. Blatrix Rumsaïs, Peccoud Jean, Born Céline, Piatscheck Finn, Benoit Laure, Sauve Mathieu, Djiéto-Lordon Champlain, Attéké Christiane, Wieringa Jan J., Harris David, McKey Doyle B.. 2017. Journal of Biogeography, 44 (8) : 1856-1868.

Comparison of the efficiency of different newcastle disease virus reverse genetics systems. Liu Haijin, Servan de Almeida Renata, Gil Patricia, Albina Emmanuel. 2017. Journal of Virological Methods, 249 : 111-116.

Complete genome sequences of six copper-resistant Xanthomonas strains causing bacterial spot of solaneous plants, Bblonging to X. gardneri, X. euvesicatoria, and X. vesicatoria, using long-read technology. Richard Damien, Boyer Claudine, Lefeuvre Pierre, Canteros B.I., Beni-Madhu Shyam, Portier Perrine, Pruvost Olivier. 2017. Genome Announcements, 5 (8):e01693-16, 2 p.

The Criollo cacao tree (Theobroma cacao L.): A review. Lachenaud Philippe, Motamayor Juan Carlos. 2017. Genetic Resources and Crop Evolution, 64 (8) : 1807-1820.

Cryptic lineage diversity in the zoonotic pathogen Angiostrongylus cantonensis. Dusitsittipon Sirilak, Criscione Charles D., Morand Serge, Komalamisra Chalit, Thaenkham Urisa. 2017. Molecular Phylogenetics and Evolution, 107 : 404-414.

Day-to-day dynamics of commensal Escherichia coli in Zimbabwean cows evidence temporal fluctuations within a host-specific population structure. Massot Méril, Couffignal Camille, Clermont Olivier, D'Humières Camille, Chatel Jérémie, Plault Nicolas, Andremont Antoine, Caron Alexandre, Mentré France, Denamur Erick. 2017. Applied and Environmental Microbiology, 83 (13):e00659, 17 p.

Diversity of bat astroviruses in Lao PDR and Cambodia. Lacroix Audrey, Duong Veasna, Hul Vibol, Sorn San, Davun Hull, Omaliss Keo, Chea Sokha, Hassanin Alexandre, Theppangna Watthana, Silithammavong Soubanh, Khammavong Kongsy, Singhalath Sinpakone, Afelt Aneta, Greatorex Zoe, Fine Amanda E., Goldstein Tracey, Olson Sarah, Joly Damien O., Keatts Lucy, Dussart Philippe, Frutos Roger, Buchy Philippe. 2017. Infection, Genetics and Evolution, 47 : 41-50.

Diversité et origine génétique des espèces de la sous famille des Aurantioideae et décryptage des structures interspécifiques des génomes des agrumes modernes. Oueslati Bahri Amel. 2017. Tunis : Université de Tunis El Manar, 200 p. Thèse de doctorat : Biologie. Génétique et biologie moléculaire : Université de Tunis El Manar

Do changes in gene expression contribute to sexual isolation and reinforcement in the house mouse? Loire Etienne, Tusso Sergio, Caminade Pierre, Severac Dany, Boursot Pierre, Ganem Guila, Smadja Carole. 2017. Molecular Ecology, 26 (19) : 5189-5202.

Ecologie et taxonomie intégrative des moucherons piqueurs du genre Culicoides Latreille (Diptera : Ceratopogonidae) en région Afrotropicale. Bakhoum Mame Thierno. 2017. Montpellier : AgroParisTech, 176 p. Thèse de doctorat : Sciences de l'évolution et de la biodiversité : AgroParisTech

Ecology of termites from the genus Nasutitermes (Termitidae: Nasutitermitinae) and potential for science-based development of sustainable pest management programs. Boulogne Isabelle, Constantino Reginaldo, Amusant Nadine, Falkowski Michaël, Rodrigues Alice M.S., Houël Emeline. 2017. Journal of Pest Science, 90 (1) : 19-37.

Evolutionary forces affecting synonymous variations in plant genomes. Clément Yves, Sarah Gautier, Holtz Yan, Homa Félix, Pointet Stéphanie, Contreras Sandy, Nabholz Benoit, Sabot François, Sauné Laure, Ardisson Morgane, Bacilieri Roberto, Besnard Guillaume, Berger Angélique, Cardi Céline, De Bellis Fabien, Fouet Olivier, Jourda Cyril, Khadari Bouchaib, Lanaud Claire, Leroy Thierry, Pot David, Sauvage Christopher, Scarcelli Nora, Tregear James, Vigouroux Yves, Yahiaoui Nabila, Ruiz Manuel, Santoni Sylvain, Labouisse Jean-Pierre, Pham Jean Louis, David Jacques, Glemin Sylvain. 2017. PLoS Genetics, 13 (5):e1006799, 28 p.

First record of Stegomyia albopicta (=Aedes albopictus) in Morocco: A major threat to public health in North Africa? Bennouna Amal, Balenghien Thomas, El Rhaffouli Hicham, Schaffner Francis, Garros Claire, Gardes Laëtitia, Lhor Youssef, Hammoumi Saliha, Chlyeh Ghita, Fassi Fihri Ouafaa. 2017. Medical and Veterinary Entomology, 31 (1) : 102-106.

First report of Pepper yellow vein Mali virus associated with pepper yellow vein disease in Cote d'Ivoire. Seka Koutoua, Ouattara Alassane, Assiri Kouamé Patrice, Kra K.D., Hoareau Murielle, Lefeuvre Pierre, Atta Diallo H., Lett Jean-Michel. 2017. New Disease Reports, 35 : p. 11.

Genetic diversity of Bemisia tabaci species colonizing cassava in Central African Republic characterized by analysis of cytochrome c oxidase subunit I. Tocko Marabena Brice Kette, Silla Semballa, Simiand Christophe, Zinga Innocent, Legg James, Reynaud Bernard, Delatte Hélène. 2017. PloS One, 12 (8):e0182749, 16 p.

Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia. Lacroix Audrey, Duong Veasna, Hul Vibol, San Sona, Davun Hull, Omaliss Keo, Chea Sokha, Hassanin Alexandre, Theppangna Watthana, Silithammavong Soubanh, Khammavong Kongsy, Singhalath Sinpakone, Greatorex Zoe, Fine Amanda E., Goldstein Tracey, Olson Sarah, Joly Damien O., Keatts Lucy, Dussart Philippe, Afelt Aneta, Frutos Roger, Buchy Philippe. 2017. Infection, Genetics and Evolution, 48 : 10-18.

Genetic diversity of the Ralstonia solanacearum species complex in the Southwest Indian Ocean Islands. Yahiaoui Noura, Cheron Jean-Jacques, Ravelomanantsoa Santatra, Hamza Abdou Azali, Petrousse Bobb, Jeetah Rajan, Jaufeerally-Fakim Yasmina, Félicité Jérôme, Fillâtre Jacques, Hostachy Bruno, Guérin Fabien, Cellier Gilles, Prior Philippe, Poussier Stéphane. 2017. Frontiers in Plant Science, 8:2139, 18 p.

Genome sequencing of the sweetpotato whitefly Bemisia tabaci MED/Q. Xie Wen, Chen Chunhai, Yang Zezhong, Guo Litao, Yang Xin, Wang Dan, Chen Ming, Huang Jinqun, Wen Yanan, Zeng Yang, Liu Yating, Xia Jixing, Tian Lixia, Cui Hongying, Wu Qingjun, Wang Shaoli, Wu Baoyun, Li Xianchiun, Tan Xinqiu, Ghanim Murad, Qiu Baoli, Pan Huipeng, Chu Dong, Delatte Hélène, Maruthi M.N., Ge Feng, Zhou Xueping, Wang Xiaowei, Wan Fang-Hao, Du Yuzhou, Luo Chen, Yan Fengming, Preisser Evan L., Jiao Xiaoguo, Coates Brad S., Zhao Jinyang, Gao Qiang, Xia Jinquan, Yin Ye, Liu Yong, Brown Judith, Zhou Xuguo-Joe, Zhang Youjun. 2017. GigaScience, 6 (5), 7 p.

Genome-wide association analysis identifies resistance loci for bacterial blight in a diverse collection of indica rice germplasm. Zhang Fan, Wu Zhi-Chao, Wang Ming-Ming, Dingkuhn Michael, Xu Jian-Long, Zhou Yong-Li, Li Zhikang. 2017. PloS One, 12 (3):e0174598, 17 p.

Genome-wide identification and characterization of cacao WRKY transcription factors and analysis of their expression in response to witches' broom disease. Silva Monteiro de Almeida Dayanne, Do Amaral Daniel Oliveira Jordão, Del-Bem Luiz-Eduardo, Bronze dos Santos Emily, Santana Silva Raner José, Peres Gramacho Karina, Vincentz Michel, Micheli Fabienne. 2017. PloS One, 12 (10):e0187346, 23 p.

Genotypic, size and morphological diversity of virioplankton in a deep oligomesotrophic freshwater lake (Lac Pavin, France). Colombet Jonathan, Robin Agnès, Sime-Ngando Télesphore. 2017. Journal of Environmental Sciences, 53 : 48-59.

Genotyping by sequencing reveals the interspecific C. maxima / C. reticulata admixture along the genomes of modern citrus varieties of mandarins, tangors, tangelos, orangelos and grapefruits. Oueslati Amel, Salhi-Hannachi Amel, Luro François, Vignes Hélène, Mournet Pierre, Ollitrault Patrick. 2017. PloS One, 12 (10):e0185618, 22 p.

Giant tortoises spread to western Indian Ocean islands by sea drift in pre-Holocene times, not by later human agency - response to Wilmé et al. (2016a). Cheke Anthony S., Pedrono Miguel, Bour Roger, Anderson Atholl, Griffiths Christine, Iverson John B., Hume Julian P., Walsh Martin. 2017. Journal of Biogeography, 44 (6) : 1426-1429.

Large-scale mitochondrial DNA analysis of native honey bee Apis mellifera populations reveals a new African subgroup private to the South West Indian Ocean islands. Techer Maéva Angélique, Clémencet Johanna, Simiand Christophe, Preeaduth Sookar, Hamza Abdou Azali, Reynaud Bernard, Delatte Hélène. 2017. BMC Genetics, 18:53, 21 p.

Le génome du cacaoyer : du décodage de sa séquence jusqu'à l'étude de gènes impliqués dans des caractères agronomiques d'intérêt. Argout Xavier. 2017. Montpellier : Montpellier SupAgro, 238 p. Thèse de doctorat : Biologie, interactions, diversité adaptative des plantes : Montpellier SupAgro

MERS-CoV in Arabian camels in Africa and Central Asia. Chu Daniel K.W., Chan Samuel M.S., Perera Ranawaka A.P.M., Miguel Eve, Roger François, Chevalier Véronique, Poon Leo L.M., Peiris Malik. 2017. Virus Evolution, 3 (1), suppl. : S16-S17. International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology. 21, Séoul, Corée du Sud, 14 Août 2016/19 Août 2016.

Molecular diversity, geographic distribution and host range of monocot-infecting mastreviruses in Africa and surrounding islands. Kraberger Simona, Saumtally A. Salem, Pande Daniel, Khoodoo Michel H.R., Dhayan Sonadall, Dookun-Saumtally Asha, Shepherd Dionne Natalie, Hartnady Penelope, Atkinson Richard, Lakay Francisco, Hanson Britt, Redhi Devasha, Monjane Adérito Luis, Windram Oliver P., Walters Matthew, Oluwafemi Sunday, Lett Jean-Michel, Lefeuvre Pierre, Martin Darren Patrick, Varsani Arvind. 2017. Virus Research, 238 : 171-178.

Morphological characterization in the genus Passiflora L.: An approach to understanding its complex variability. Ocampo Perez John Albeiro, Coppens D'Eeckenbrugge Geo. 2017. Plant Systematics and Evolution, 303 (4) : 531-558.

New insights on leucine-rich repeats receptor-like kinase orthologous relationships in angiosperms. Dufayard Jean François, Bettembourg Mathilde, Fischer Iris, Droc Gaëtan, Guiderdoni Emmanuel, Périn Christophe, Chantret Nathalie, Diévart Anne. 2017. Frontiers in Plant Science, 8:381, 18 p.

New multilocus variable-number tandem-repeat analysis (MLVA) scheme for fine-scale monitoring and microevolution-related study of Ralstonia pseudosolanacearum phylotype I populations. Guinard Jérémy, Latreille Anne, Guérin Fabien, Poussier Stéphane, Wicker Emmanuel. 2017. Applied and Environmental Microbiology, 83 (5):e03095, 16 p.

New strains of chickpea chlorotic dwarf virus discovered on diseased papaya and tomato plants in Burkina Faso. Ouattara Alassane, Tiendrebeogo Fidèle, Lefeuvre Pierre, Hoareau Murielle, Claverie Sohini, Traoré Edgar Valentin, Barro Nicolas, Traoré Oumar, Varsani Arvind, Lett Jean-Michel. 2017. Archives of Virology, 162 (6) : 1791-1794.

The Pacific yam (Dioscorea nummularia Lam.), an under-exploited tuber crop from Melanesia. Lebot Vincent, Malapa Roger, Abraham Kuttolamadathil. 2017. Genetic Resources and Crop Evolution, 64 (1) : 217-235.

Phylogenetic, structural, and functional characterization of AMT3;1, an ammonium transporter induced by mycorrhization among model grasses. Koegel Sally, Mieulet Delphine, Baday Sefer, Chatagnier Odile, Lehmann Moritz F., Wiemken Andres, Boller Thomas, Wipf Daniel, Bernèche Simon, Guiderdoni Emmanuel, Courty Pierre-Emmanuel. 2017. Mycorrhiza, 27 (7) : 695-708.

Phytophthora megakarya and Phytophthora palmivora, closely related causal agents of cacao black pod rot, underwent increases in genome sizes and gene numbers by different mechanisms. Ali Shahin, Shao Jonathan, Lary David J., Kronmiller Brent A., Shen Danyu, Strem Mary, Amoako-Attah Ishmael, Yaw Akrofi Andrew, Begoude Dider, Ten Hoopen Gerben Martijn, Coulibaly Klotioloma, Kébé Boubacar Ismaël, Melnick Rachel L., Guiltinan Mark J., Tyler Brett, Meinhardt Lyndel W., Bailey Bryan. 2017. Genome Biology and Evolution, 9 (3) : 536-557.

Post genomics era for orchid research. Tsai Wen-Chieh, Diévart Anne, Hsu Chia-Chi, Hsiao Yu-Yun, Chiou Shang-Yi, Huang Hsin, Chen Hong-Hwa. 2017. Botanical Studies, 58:e61, 22 p.

Revealing the diversity of introduced Coffea canephora germplasm in Ecuador: Towards a national strategy to improve robusta. Loor Solorzano Rey Gaston, De Bellis Fabien, Leroy Thierry, Plaza Luis, Guerrero Hilton, Subia Cristian, Calderón Darío, Fernández Fabián, Garzón Iván, Lopez Diana, Vera Danilo. 2017. Scientific World Journal, 2017:e1248954, 12 p.

Spécialisation d'hôte au sein d'une communauté d'insectes phytophages : le cas des Tephritidae à La Réunion. Charlery De La Masseliere Maud. 2017. Saint-Denis : Université de la Réunion, 189 p. Thèse de doctorat : Biologie et environnement : Université de la Réunion

Tipdatingbeast: An r package to assist the implementation of phylogenetic tip-dating tests using beast. Rieux Adrien, Khatchikian Camilo E.. 2017. Molecular Ecology Resources, 17 (4) : 608-613.

Tomato leaf curl Burkina Faso virus: A novel tomato-infecting monopartite begomovirus from Burkina Faso. Ouattara Alassane, Tiendrebeogo Fidèle, Lefeuvre Pierre, Claverie Sohini, Hoareau Murielle, Traoré Edgar Valentin, Barro Nicolas, Traoré Oumar, Lett Jean-Michel. 2017. Archives of Virology, 162 (5) : 1427-1429.

Tube-wise diagnostic Microarray for the multiplex characterization of the complex plant pathogen Ralstonia solanacearum. Cellier Gilles, Arribat Sandrine, Chiroleu Frédéric, Prior Philippe, Robène Isabelle. 2017. Frontiers in Plant Science, 8:821, 13 p.

Two-plasmid system to increase the rescue efficiency of paramyxoviruses by reverse genetics: The example of rescuing Newcastle Disease Virus. Liu Haijin, Albina Emmanuel, Gil Patricia, Minet Cécile, Servan de Almeida Renata. 2017. Virology, 509 : 42-51.

Understanding the genetic diversity and population structure of yam (Dioscorea alata L.) using microsatellite markers. Arnau Gemma, Bhattacharjee Pallab, MN Sheela, Chaïr Hâna, Malapa Roger, Lebot Vincent, K. Abraham, Perrier Xavier, Petro Dalila, Penet Laurent, Pavis Claude. 2017. PloS One, 12 (3):e0174150, 17 p.

UniEuk: Time to speak a common language in protistology! Berney Cédric, Ciuprina Andreea, Bender Sara, Brodie Juliet, Edgcomb Virginia, Kim Eunsoo, Rajan Jeena, Wegener Parfrey Laura, Adl Sina, Audic Stéphane, Bass David, Caron David, Cochrane Guy, Czech Lucas, Dunthorn Micah, Geisen Stefan, Glöckner Franck Olivier, Mahé Frédéric, Quast Christian, Kaye Jonathan Z., Simpson Alastair G.B., Stamatakis Alexandros, del Campo Javier, Yilmaz Pelin, de Vargas Colomban. 2017. Journal of Eukaryotic Microbiology, 64 (3) : 407-411.

Wild African great apes as natural hosts of malaria parasites: Current knowledge and research perspectives. De Nys Hélène, Löhrich Therese, Wu Doris, Calvignac-Spencer Sébastien, Leendertz Fabian Hubertus. 2017. Primate Biology, 4 (1) : 47-59.

The evolutionary fate of the chloroplast and nuclear rps16 genes as revealed through the sequencing and comparative analyses of four novel legume chloroplast genomes from Lupinus. Keller J., Rousseau-Gueutin Mathieu, Martin Guillaume, Morice Jérôme, Boutte Julien, Coissac E., Ourari M., Ainouche Malika Lily, Salmon Armel, Cabello-Hurtado F., Ainouche Abdelkader. 2017. DNA Research, 24 (4) : 343-358.

A first higher-level time-calibrated phylogeny of antlions (Neuroptera: Myrmeleontidae). Michel Bruno, Clamens Anne-Laure, Béthoux Olivier, Kergoat Gael J., Condamine Fabien L.. 2017. Molecular Phylogenetics and Evolution, 107 : 103-116.

The genome draft of coconut (Cocos nucifera). Xiao Yong, Xu Pengwei, Fan Haikuo, Baudouin Luc, Xia Wei, Bocs Stéphanie, Xu Junyang, Li Qiong, Guo Anping, Zhou Lixia, Li Jing, Wu Yi, Ma Zilong, Armero Villanueva Alix Augusto, Issali Auguste Emmanuel, Liu Na, Peng Ming, Yang Yaodong. 2017. GigaScience, 6 (11), 11 p.

The trouble with MEAM2: Implications of pseudogenes on species delimitation in the globally invasive Bemisia tabaci (Hemiptera: Aleyrodidae) cryptic species complex. Tay Wee Tek, Elfekih S., Court L.N., Gordon Karl H.J., Delatte Hélène, De Barro Paul. 2017. Genome Biology and Evolution, 9 (10) : 2732-2738.

Ancient and modern DNA reveal dynamics of domestication and cross-continental dispersal of the dromedary. Almathen Faisal, Charruau Pauline, Mohandesan Elmira, Mwacharo Joram M., Orozco-terWengel Pablo, Pitt Daniel, Abdussamad Abdussamad M., Uerpmann Margarethe, Uerpmann Hans-Peter, De Cupere Bea, Magee Peter, Alnaqeeb Majed A., Salim Bashir, Raziq Abdul, Dessie Tadelle, Abdelhadi Omer M.A., Banabazi Mohammad H., Al-Eknah Marzouk, Walzer Chris, Faye Bernard, Hofreiter Michael, Peters Joris, Hanotte Olivier, Burger Pamela A.. 2016. Proceedings of the National Academy of Sciences of the United States of America, 113 (24) : 6707-6712.

Bacillus cereus biovar anthracis causing anthrax in sub-saharan Africa - Chromosomal monophyly and broad geographic distribution. Antonation Kym S., Grützmacher Kim, Dupke Susann, Mabon Philip, Zimmermann Fee, Lankester Felix, Peller Tianna, Feistner Anna, Todd Angelique, Herbinger Ilka, De Nys Hélène, Muyembe-Tamfun Jean-Jacques, Karhemere Stomy, Wittig Roman M., Couacy-Hymann Emmanuel, Grunow Roland, Calvignac-Spencer Sébastien, Corbett Cindi R., Klee Silke R., Leendertz Fabian Hubertus. 2016. PLoS Neglected Tropical Diseases, 10 (9):e0004923, 14 p.

Cacao trees (Theobroma cacao L.) of the "Guiana" genetic group: "Tanpok 2012" survey. Lachenaud Philippe, Fouet Olivier, Couturier Christophe, Lanaud Claire. 2016. Genetic Resources and Crop Evolution, 63 (5) : 781-790.

Characterization and phylogenetic analysis of new bat astroviruses detected in Gabon, Central Africa. Rougeron V., Suquet E., Maganda G.D., Jiolle Davy, Mombo I.M., Bourgarel Mathieu, Motsch Peggy, Arnathau Céline, Durand Patrick, Drexler Jan Felix, Drosten Christian, Renaud François, Prugnolle Franck, Leroy Eric M.. 2016. Acta Virologica, 60 (4) : 386-392.

Combating a global threat to a clonal crop: Banana black sigatoka pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) genomes reveal clues for disease control. Arango Isaza Rafael E., Diaz-Trujillo Caucasella, Dhillon Braham, Aerts Andrea, Carlier Jean, Crane Charles F., de Jong Tristan V., De Vries Ineke, Dietrich Robert, Farmer Andrew, Fortes Fereira Claudia, Garcia Suzana, Guzman Mauricio, Hamelin Richard C., Lindquist Erika, Mehrabi Rahim, Quiros Madrigal Olman, Schmutz Jeremy, Shapiro Harris, Reynolds Elizabeth, Scalliet Gabriel, Souza Manoel, Stergiopoulos Ioannis, Van der Lee Theo A.J., De Wit Pierre J. G. M., Zapater Marie-Françoise, Zwiers Lute-Harm, Grigoriev Igor, Goodwin Stephen B., Kema Gert H.J.. 2016. PLoS Genetics, 12 (8):e1005876, 36 p.

Combining conservative and variable markers to infer the evolutionary history of Prunus subgen. Amygdalus s.l. under domestication. Delplancke Malou, Yazbek Mariana, Arrigo Nils, Espindola Anahi, Joly Hélène, Alvarez Nadir. 2016. Genetic Resources and Crop Evolution, 63 (2) : 221-234.

DNA barcoding and surveillance sampling strategies for Culicoides biting midges (Diptera: Ceratopogonidae) in southern India. Harrup Lara E., Laban Swathi, Purse Bethan V., Krishnamohan Reddy Yarabolu, Narasimha Reddy Yella, Munivenkatappa Byregowda Sonnahallipura, Kumar Naveen, Muniramaiah Purushotham Kondappa, Kowalli Shrikant, Prasad Minakshi, Prasad Gaya, Bettis Alison A., de Keyser Rien, Garros Claire, Gopurenko David, Bellis Glenn A., Labuschagne Karien, Mathieu Bruno, Carpenter Simon. 2016. Parasites and Vectors, 9 (461), 20 p.

Discovery of parvovirus-related sequences in an unexpected broad range of animals. François Sarah, Filloux Denis, Roumagnac Philippe, Bigot D., Gayral Philippe, Martin Darren Patrick, Froissart Rémi, Ogliastro Mylène. 2016. Scientific Reports, 6 (30880), 13 p.

Distribution patterns of microbial communities in ultramafic landscape: A metagenetic approach highlights the strong relationships between diversity and environmental traits. Bordez Laurent, Jourand Philippe, Ducousso Marc, Carriconde Fabian, Cavaloc Yvon, Santini Sébastien, Claverie Jean-Michel, Wantiez L., Leveau Antoine, Amir Hamid. 2016. Molecular Ecology, 25 (10) : 2258-2272.

Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar. De Bruyn Alexandre, Harimalala Mireille Aurélie, Zinga Innocent, Mabvakure Batsirai, Hoareau Murielle, Ravigné Virginie, Walters Matthew, Reynaud Bernard, Varsani Arvind, Harkins Gordon William, Martin Darren Patrick, Lett Jean-Michel, Lefeuvre Pierre. 2016. BMC Evolutionary Biology, 16 (182), 21 p.

Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem. Dayaram Anisha, Galatowitsch Mark L., Argüello-Astorga Gerardo, van Bysterveldt Katherine, Kraberger Simona, Stainton Daisy, Harding Jon S., Roumagnac Philippe, Martin Darren Patrick, Lefeuvre Pierre, Varsani Arvind. 2016. Infection, Genetics and Evolution, 39 : 304-316.

Draft genome sequences of nine strains of Ralstonia solanacearum differing in virulence to eggplant (Solanum melongena). Guinard Jérémy, Vinatzer Boris A., Poussier Stéphane, Lefeuvre Pierre, Wicker Emmanuel. 2016. Genome Announcements, 4 (1):e01415, 15 p.

Ecology of avian influenza virus in wild birds in tropical Africa. Gaidet Nicolas. 2016. Avian Diseases, 60 (1s) : 296-301.

Emergence of lineage IV peste des petits ruminants virus in Ethiopia: Complete genome sequence of an Ethiopian isolate 2010. Muniraju Murali, Mahapatra Mana, Ayelet Gelagay, Babu A., Olivier G., Munir M., Libeau Geneviève, Batten Carrie, Banyard Ashley C., Parida Satya. 2016. Transboundary and Emerging Diseases, 63 (4) : 435-442.

Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae. Islam M. Totazzal, Croll Daniel, Gladieux Pierre, Soanes Darren M., Persoons Antoine, Bhattacharjee Pallab, Hossain Md. Shaid, Gupta Dipali Rani, Rahman Md Mahbubur, Mahboob M. Golam, Cook Nicola, Salam Moin U., Surovy Musrat Zahan, Sancho Vanessa Bueno, Maciel João Leodato Nunes, NhaniJúnior Antonio, Castroagudín Vanina Lilián, de Assis Reges Juliana T., Ceresini Paulo Cezar, Ravel Sébastien, Kellner Ronny, Fournier Elisabeth, Tharreau Didier, Lebrun Marc-Henri, McDonald Bruce A., Stitt Timothy, Swan Daniel, Talbot Nicholas J., Saunders Diane G.O., Win Joe, Kamoun Sophien. 2016. BMC Biology, 14 (84), 11 p.

Evolutionary dynamics of the Leucine-Rich Repeats Receptor-Like Kinase (LRR-RLK) subfamily in angiosperms. Fischer Iris, Diévart Anne, Droc Gaëtan, Dufayard Jean François, Chantret Nathalie. 2016. Plant Physiology, 170 (3) : 1595-1610.

Evolutionary heritage influences Amazon tree ecology. Coelho de Souza Fernanda, Dexter Kyle G., Phillips Oliver L., Brienen Roel, Chave Jérôme, Galbraith David, Lopez Gonzalez Gabriela, Monteagudo Mendoza Abel, Pennington R.T., Poorter Lourens, Alexiades Miguel N., Álvarez-Dávila Esteban, Andrade Ana, Aragao Luiz E.O.C., Araujo-Murakami Alejandro, Arets Eric J. M. M., Aymard Corredor Gerardo A., Baraloto Christopher, Barroso Jorcely, Bonal Damien, Boot Rene G.A., Camargo Jose Luis C., Comiskey James, Cornejo Valverde Fernando, de Camargo Plínio B., Di Fiore Anthony, Elias Fernando, Erwin Terry, Feldpausch Ted R., Ferreira Leandro V., Fyllas Nikolaos M., Gloor Emanuel, Hérault Bruno, et al.. 2016. Proceedings of the Royal Society B: Biological Sciences, 283 (1844):20161587, 10 p.

Genetic variations of Turkish bank vole, Myodes glareolus (Mammalia: Rodentia) inferred from mtDNA. Colak Reyhan, Olgun Karacan Gül, Kandemir Irfan, Colak Ercüment, Kankiliç Teoman, Yigit Nuri, Michaux Johan. 2016. Mitochondrial DNA. Part A, 27 (6) : 4372-4379.

Genome-wide investigation of hsf genes in sesame reveals their segmental duplication expansion and their active role in drought stress response. Dossa Komivi, Diouf Diaga, Cissé Ndiaga. 2016. Frontiers in Plant Science, 7:1522, 16 p.

Genomic and proteomic evidence supporting the division of the plant pathogen Ralstonia solanacearum into three species. Prior Philippe, Ailloud Florent, Dalsing Beth, Remenant Benoit, Sanchez Borja, Allen Caitilyn. 2016. BMC Genomics, 17 (1), 11 p.

Geographical distribution of Cacao swollen shoot virus molecular variability in Ghana. Abrokwah Francis, Dzahini-Obiatey Henry, Galyuon Isaac, Osae-Awuku Francis, Muller Emmanuelle. 2016. Plant Disease, 100 (10) : 2011-2017.

The Hevea brasiliensis XIP aquaporin subfamily: Genomic, structural and functional characterizations with relevance to intensive latex harvesting. Lopez David, Ben Amira Maroua, Brown Daniel, Muries Beatriz, Brunel-Michac Nicole, Bourgerie Sylvain, Porcheron Benoit, Lemoine Remi, Chrestin Hervé, Mollison Ewan, Di Cola Alessandra, Frigerio Lorenzo, Julien Jean-Louis, Gousset-Dupont Aurélie, Fumanal Boris, Label Philippe, Pujade-Renaud Valérie, Auguin Daniel, Venisse Jean-Stéphane. 2016. Plant Molecular Biology, 91 (4-5) : 375-396.

How endogenous plant pararetroviruses shed light on Musa evolution. Duroy Pierre-Olivier, Perrier Xavier, Laboureau Nathalie, Jacquemoud-Collet Jean-Pierre, Iskra Caruana Marie-Line. 2016. Annals of Botany, 117 (4) : 625-641.

Impact and epidemiological investigations into the incursion and spread of peste des petits ruminants in the Comoros Archipelago: An increased threat to surrounding Islands. Cetre-Sossah Catherine, Kwiatek Olivier, Faharoudine Abdourahime, Soulé Miradje, Moutroifi Y.O., Vrel Marie-Astrid, Salami Habib, Rassoul S., Asnaoui M., Moindjie Y., Albina Emmanuel, Libeau Geneviève, Cardinale Eric. 2016. Transboundary and Emerging Diseases, 63 (4) : 452-459.

In planta comparative transcriptomics of host-adapted strains of Ralstonia solanacearum. Ailloud Florent, Lowe Tiffany, Robène Isabelle, Cruveiller Stéphane, Allen Caitilyn, Prior Philippe. 2016. PeerJ, 4:e1549, 18 p.

Inferences from tip-calibrated phylogenies: A review and a practical guide. Rieux Adrien, Balloux François. 2016. Molecular Ecology, 25 (9) : 1911-1924.

Insight into the AP2/ERF transcription factor superfamily in sesame and expression profiling of DREB subfamily under drought stress. Dossa Komivi, Wei Xin, Li Donghua, Foncéka Daniel, Zhang Yanxin, Wang Linhai, Yu Jingyin, Liao Boshou, Diouf Diaga, Cissé Ndiaga, Zhang Xiurong. 2016. BMC Plant Biology, 16 (171), 16 p.

Isolation of Bartonella henselae and two new Bartonella subspecies, Bartonella koehlerae Subspecies boulouisii subsp. nov. and Bartonella koehlerae Subspecies bothieri subsp. nov. from free-ranging Californian mountain lions and bobcats. Chomel Bruno B., Molia Sophie, Kasten Rickie W., Borgo Gina M., Stuckey Matthew J., Maruyama Soichi, Chang Chao-chin, Haddad Nadia, Koehler Jane E.. 2016. PloS One, 11 (3):e0148299, 21 p.

Isolation of Bartonella henselae, Bartonella koehlerae subsp. koehlerae, Bartonella koehlerae subsp. bothieri and a new subspecies of B. koehlerae from free-ranging lions (Panthera leo) from South Africa, cheetahs (Acinonyx jubata) from Namibia and captive cheetahs from California. Molia Sophie, Kasten Rickie W., Stuckey Matthew J., Boulouis Henri-Jean, Allen J., Borgo Gina M., Koehler Jane E., Chang Chao-chin, Chomel Bruno B.. 2016. Epidemiology and Infection, 144 (15) : 3237-3243.

Lineage-specific evolutionary histories and regulation of major starch metabolism genes during banana ripening. Jourda Cyril, Cardi Céline, Gibert Olivier, Giraldo Toro Andres, Ricci Julien, Mbéguié-A-Mbéguié Didier, Yahiaoui Nabila. 2016. Frontiers in Plant Science, 7 (1778), 21 p.

Low genetic diversity of Banana bunchy top virus, with a sub-regional pattern of variation, in Democratic Republic of Congo. Mukwa Lyna Fama Tongo, Gillis A., Vanhese V., Romay Gustavo, Galzi Serge, Laboureau Nathalie, Kalonji Mbuyi A., Iskra Caruana Marie-Line, Bragard Claude. 2016. Virus Genes, 52 (6) : 900-905.

Metagenomic-based screening and molecular characterization of cowpea-infecting viruses in Burkina Faso. Palanga Essowé, Filloux Denis, Martin Darren Patrick, Fernandez Emmanuel, Gargani Daniel, Ferdinand Romain, Zabré Jean, Bouda Zakaria, Neya Bouma, Sawadogo Mahamadou, Traoré Oumar, Peterschmitt Michel, Roumagnac Philippe. 2016. PloS One, 11 (10):e0165188, 21 p.

Molecular phylogeny of Southeast Asian arboreal murine rodents. Pagès Marie, Fabre Pierre-Henri, Chaval Yannick, Mortelliti Alessio, Nicolas Violaine, Wells Konstans, Michaux Johan, Lazzari Vincent. 2016. Zoologica Scripta, 45 (4) : 349-364.

Multilocus phylogeny and ecological differentiation of the "Eupelmus urozonus species group" (Hymenoptera, Eupelmidae) in the West-Palaearctic. Al Khatib Fadel, Cruaud Astrid, Fusu Lucian, Genson Gwenaëlle, Rasplus Jean-Yves, Ris Nicolas, Delvare Gérard. 2016. BMC Evolutionary Biology, 16 (13), 20 p.

Ongoing geographical spread of Tomato yellow leaf curl virus. Mabvakure Batsirai, Martin Darren Patrick, Kraberger Simona, Cloete Leendert, van Brunschot Sharon, Geering Andrew D., Thomas John, Bananej Kaveh, Lett Jean-Michel, Lefeuvre Pierre, Varsani Arvind, Harkins Gordon William. 2016. Virology, 498 : 257-264.

PCR-based identification of cacao black pod causal agents and identification of biological factors possibly contributing to Phytophthora megakarya's field dominance in West Africa. Ali Shahin, Amoako-Attah Ishmael, Bailey Rebecca, Strem Mary, Schmidt Martha, Yaw Akrofi Andrew, Surujdeo-Maharaj Surendra, Kolawole Oluwaseun O., Begoude Dider, Ten Hoopen Gerben Martijn, Goss Erica, Phillips-Mora Wilbert, Meinhardt Lyndel W., Bailey Bryan. 2016. Plant Pathology, 65 (7) : 1095-1108.

Phylogenetic origin of limes and lemons revealed by cytoplasmic and nuclear markers. Curk Franck, Ollitrault Frédérique, Garcia-Lor Andrés, Luro François, Navarro Luis, Ollitrault Patrick. 2016. Annals of Botany, 117 (4) : 565-583.

Phylogeographic reconstructions of a rift valley fever virus strain reveals transboundary animal movements from Eastern Continental Africa to the Union of the Comoros. Maquart Marianne, Pascalis Hervé, Abdouroihamane F., Roger Matthieu, Abdourahime F., Cardinale Eric, Cetre-Sossah Catherine. 2016. Transboundary and Emerging Diseases, 63 (2) : e281-e285.

Plastid phylogenetics of Oceania yams (Dioscorea spp., Dioscoreaceae) reveals natural interspecific hybridization of the greater yam (D. alata). Chaïr Hâna, Sardos Julie, Supply Anthea, Mournet Pierre, Malapa Roger, Lebot Vincent. 2016. Botanical Journal of the Linnean Society, 180 (3) : 319-333.

Possible foodborne transmission of hepatitis E virus from domestic pigs and wild boars from Corsica. Pavio Nicole, Laval Morgane, Maestrini Oscar, Casabianca François, Charrier François, Jori Ferran. 2016. Emerging Infectious Diseases, 22 (12) : 2197-2199.

Preliminary study on prevalence, risk factor and genetic homogeneity of porcine reproductive and respiratory syndrome virus in registered pig farms in Heilongjiang, China. Wang Jingfei, Wen H., Wang Shaoli, Sun W., Shen N., Liu Z., Liu Yating, Jiang C., Sun G., Goutard Flavie, Cai X.. 2016. Transboundary and Emerging Diseases, 63 (5) : e369-e380.

Reappraisal of Hydatigera taeniaeformis (Batsch, 1786) (Cestoda: Taeniidae) sensu lato with description of Hydatigera kamiyai n. sp. Lavikainen Antti, Iwaki Takashi, Haukisalmi Voitto, Konyaev Sergey V., Casiraghi Maurizio, Dokuchaev Nikolai E., Galimberti Andrea, Halajian Ali, Henttonen Heikki, Ichikawa-Seki Madoka, Itagaki Tadashi, Krivopalov Anton V., Meri Seppo, Morand Serge, Näreaho Anu, Olsson Gert E., Ribas Alexis, Terefe Yitagele, Nakao Minoru. 2016. International Journal for Parasitology, 46 (5-6) : 361-374.

SSR markers indicate a common origin of self-pollinating dwarf coconut in South-East Asia under domestication. Perera Lalith, Baudouin Luc, Mackay Ian. 2016. Scientia Horticulturae, 211 : 255-262.

Shotgun sequencing of the mitochondrial genome of the Aldabra giant tortoise (Aldabrachelys gigantea). Besnard Guillaume, Thèves Catherine, Mata Xavier, Holota Hélène, Rakotozafy Lucien M.A., Pedrono Miguel. 2016. Mitochondrial DNA. Part A, 27 (6) : 4543-4544.

Subtelomere organization in the genome of the microsporidian Encephalitozoon cuniculi: Patterns of repeated sequences and physicochemical signatures. Dia Ndongo, Lavie Laurence, Faye Ngor, Méténier Guy, Yeramian Edouard, Duroure Christophe, Toguebaye B.S., Frutos Roger, Niang Mbayame N., Vivares Christian, Ben Mamoun Choukri, Cornillot Emmanuel. 2016. BMC Genomics, 17 (34), 20 p.

Towards a molecular taxonomic key of the Aurantioideae subfamily using chloroplastic SNP diagnostic markers of the main clades genotyped by competitive allele-specific PCR. Oueslati Amel, Ollitrault Frédérique, Baraket Ghada, Salhi-Hannachi Amel, Navarro Luis, Ollitrault Patrick. 2016. BMC Genetics, 17 (118), 14 p.

Trait coordination, mechanical behaviour and growth form plasticity of Amborella trichopoda under variation in canopy openness. Trueba Santiago, Isnard Sandrine, Barthélémy Daniel, Olson Mark E.. 2016. AoB Plants, 8:plw068, 18 p.

Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits. Yuyama Priscilla Mary, Reis Júnior Osvaldo, Ivamoto Suzana Tiemi, Domingues Douglas S., Carazzolle Marcelo Falsarella, Pereira Gonçalo Amarante Guimarães, Charmetant Pierre, Leroy Thierry, Pereira Luiz Filipe P.. 2016. Molecular Genetics and Genomics, 291 (1) : 323-336.

Turning rice meiosis into mitosis. Mieulet Delphine, Jolivet Sylvie, Rivard Maud, Cromer Laurence, Vernet Aurore, Mayonove Pauline, Pereira Lucie, Droc Gaëtan, Courtois Brigitte, Guiderdoni Emmanuel, Mercier Raphael. 2016. Cell Research, 26 (11) : 1242-1254.

VSEARCH: a versatile open source tool for metagenomics. Rognes Torbjørn, Flouri Tomás, Nichols Ben, Quince Christopher, Mahe Frédéric. 2016. PeerJ, 4 (e2584), 22 p.

Validation d'un diagnostic de la peste porcine africaine (PPA) utilisant des papiers buvards et caractérisation moléculaire de souches malgaches. Randriamparany Tantely. 2016. Antananarivo : Université d'Antananarivo, 169 p. Thèse de doctorat : Biotechnologie, Microbiologie : Université d'Antananarivo

A gene-based map of the Nod factor-independent Aeschynomene evenia sheds new light on the evolution of nodulation and legume genomes. Chaintreuil Clémence, Rivallan Ronan, Bertioli David J., Klopp Christophe, Gouzy Jérôme, Courtois Brigitte, Leleux Philippe, Martin Guillaume, Rami Jean-François, Gully Djamel, Parrinello Hugues, Severac Dany, Patrel Delphine, Fardoux Joël, Ribière William, Boursot Marc, Cartieaux Fabienne, Czernic Pierre, Ratet Pascal, Mournet Pierre, Giraud Eric, Arrighi Jean-François. 2016. DNA Research, 23 (4) : 365-376.

A molecular and morphological reassessment of the phylogeny of the subfamily Ophioninae (Hymenoptera: Ichneumonidae). Rousse Pascal, Quicke Donald L.J., Matthee Conrad A., Lefeuvre Pierre, Van Noort Simon. 2016. Zoological Journal of the Linnean Society, 178 (1) : 128-148.

A novel multilocus variable number tandem repeat analysis typing scheme for African phylotype III strains of the Ralstonia solanacearum species complex. Ravelomanantsoa Santatra, Robène Isabelle, Chiroleu Frédéric, Guérin Fabien, Poussier Stéphane, Pruvost Olivier, Prior Philippe. 2016. PeerJ, 4 (e1949), 22 p.

Alphacoronaviruses detected in French bats are phylogeographically linked to coronaviruses of European bats. Goffard Anne, Demanche Christine, Arthur Laurent, Pinçon Claire, Michaux Johan, Dubuisson Jean. 2015. Viruses, 7 (12) : 6279-6290.

Botanique. Louppe Dominique, Barthélémy Daniel. 2015. In : Mémento du forestier tropical. Mille Gilles (ed.), Louppe Dominique (ed.). Versailles : Ed. Quae, 299-314. ISBN 978-2-7592-2340-4

Characterization of a candidate gene for drought tolerance in Coffea: the CcDREB1D gene, in contrasting genotypes of Coffea canephora and related species. Costa Alves Gabriel. 2015. Montpellier : Montpellier SupAgro, 190 p. Thèse de doctorat : Biologie intégrative : Montpellier SupAgro Centre international d'études supérieures en sciences agronomiques

Clade- and species-specific features of genome evolution in the Saccharomycetaceae. Wolfe Kenneth H., Armisén David, Proux-Wera Estelle, ÓhÉigeartaigh Seán S., Azam Haleema, Gordon Jonathan, Byrne Kevin P.. 2015. FEMS Yeast Research, 15 (5), 12 p.

Colonization of the Mediterranean Basin by the vector biting midge species Culicoides imicola: an old story. Jacquet Stéphan, Garros Claire, Lombaert E., Walton E., Restrepo J., Allene Xavier, Baldet Thierry, Cetre-Sossah Catherine, Chaskopoulou A., Delecolle Jean Claude, Desvars Amélie, Djerbal Mouloud, Fall Moussa, Gardes Laëtitia, De Garine-Wichatitsky Michel, Goffredo Maria, Gottlieb Yuval, Gueye Fall Assane, Kasina M., Labuschagne Karien, Lhor Youssef, Lucientes Javier, Martin Thibaud, Mathieu Bertrand, Miranda Miguel Angel, Pages Nitu, Pereira da Fonseca Isabel, Ramilo David, Segard Adeline, Setier-Rio Marie-Laure, Stachurski Frédéric, Tabbabi A., Talla Seck Monar, Venter Gert J., Zimba Moses, Balenghien Thomas, Guis Hélène, Chevillon Christine, Bouyer Jérémy, Huber Karine. 2015. Molecular Ecology, 24 (22) : 5707-5725.

Comparative analysis: recent developments and uses with parasites. Desdevises Yves, Morand Serge, Krasnov Boris R., Claude Julien. 2015. In : Parasite diversity and diversification: evolutionary ecology meets phylogenetics. Morand Serge (ed.), Krasnov Boris R (ed.), Littlewood D. Timothy J. (ed). Cambridge : Cambridge University Press, 337-350. ISBN 978-1-107-03765-6

Comparative genomic analysis of Ralstonia solanacearum reveals candidate genes for host specificity. Ailloud Florent, Lowe Tiffany, Cellier Gilles, Roche David, Allen Caitilyn, Prior Philippe. 2015. BMC Genomics, 16 (270), 11 p.

Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges. Gordon Jonathan, Lefeuvre Pierre, Escalon Aline, Barbe Valérie, Cruveiller Stéphane, Gagnevin Lionel, Pruvost Olivier. 2015. BMC Genomics, 16 (1098), 20 p.

Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas. Jacobs Jonathan M., Pesce Céline, Lefeuvre Pierre, Koebnik Ralf. 2015. Frontiers in Plant Science, 6 (431), 13 p.

Culicoides Latreille (Diptera: Ceratopogonidae) taxonomy: Current challenges and future directions. Harrup Lara E., Bellis Glenn A., Balenghien Thomas, Garros Claire. 2015. Infection, Genetics and Evolution, 30 : 249-266.

Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants. Chiapello Hélène, Mallet Ludovic, Guerin Cyprien, Aguileta Gabriela, Amselem Joelle, Kroj Thomas, Ortega-Abboud Enrique, Lebrun Marc-Henri, Henrissat Bernard, Gendrault Annie, Rodolphe François, Tharreau Didier, Fournier Elisabeth. 2015. Genome Biology and Evolution, 7 (10) : 2896-2912.

Decomposing phylodiversity. Marcon Eric, Hérault Bruno. 2015. Methods in Ecology and Evolution, 6 (3) : 333-339.

Description and phylogenetic placement of Beauveria hoplocheli sp. nov. used in the biological control of the sugarcane white grub, Hoplochelus marginalis, on Reunion Island. Robène-Soustrade Isabelle, Jouen Emmanuel, Pastou Didier, Payet-Hoarau Magali, Goble Tarryn, Linderme Daphné, Lefeuvre Pierre, Calmes Cédric, Reynaud Bernard, Nibouche Samuel, Costet Laurent. 2015. Mycologia, 107 (6) : 1221-1232.

Detection in and circulation of Bluetongue virus among domestic ruminants in Madagascar. Andriamandimby Soa Fy, Viarouge Cyril, Ravalohery Jean-Pierre, Reynes Jean-Marc, Sailleau Corinne, Tantely Luciano Michaël, Elissa Nohal, Cardinale Eric, Sall Amadou Alpha, Zientara Stéphan, Héraud Jean Michel. 2015. Veterinary Microbiology, 176 (3-4) : 268-273.

Diverse gammacoronaviruses detected in wild birds from Madagascar. De Sales Lima Francisco Esmaile, Gil Patricia, Pedrono Miguel, Minet Cécile, Kwiatek Olivier, Campos Fabrício Souza, Spilki Fernando Rosado, Roehe Paulo Michel, Franco Ana Cláudia, Maminiaina Olivier Fridolin, Albina Emmanuel, Servan de Almeida Renata. 2015. European Journal of Wildlife Research, 61 (4) : 635-639.

Diversité génétique et phylogéographie de l'abeille Apis mellifera dans les îles du Sud-Ouest de l'océan Indien. Techer Maéva Angélique. 2015. Saint-Denis : Université de la Réunion, 345 p. Thèse de doctorat : Biologie des populations : Université de la Réunion

Does host receptivity or host exposure drives dynamics of infectious diseases? The case of West Nile Virus in wild birds. Roche Benjamin, Morand Serge, Elguero Eric, Balenghien Thomas, Guégan Jean-François, Gaidet Nicolas. 2015. Infection, Genetics and Evolution, 33 : 11-19.

Draft genome sequence of an alphaproteobacterium associated with the Mediterranean sponge Oscarella lobularis. Jourda Cyril, Santini Sébastien, Rocher Caroline, Le Bivic André, Claverie Jean-Michel. 2015. Genome Announcements, 3 (5):e00977-15, 2 p.

Endogenous murine leukemia retroviral variation across wild European and inbred strains of house mouse. Hartmann Stefanie, Hasenkamp Natascha, Mayer Jens, Michaux Johan, Morand Serge, Mazzoni Camila J., Roca Alfred L., Greenwood Alex. 2015. BMC Genomics, 16 (613), 13 p.

Entropart: An R package to measure and partition diversity. Marcon Eric, Hérault Bruno. 2015. Journal of Statistical Software, 67 (8), 26 p.

Evolution, systématique et diversité des tiques. Plantard Olivier, Pavel Ionut, Vial Laurence. 2015. In : Tiques et maladies à tiques : biologie, écologie évolutive, épidémiologie. Karen D. McCoy (ed.), Nathalie Boulanger (ed.). Marseille : IRD, 31-51. (Didactiques) ISBN 978-2-7099-2100-8

Full genome sequence analysis of two isolates reveals a novel Xanthomonas species close to the sugarcane pathogen Xanthomonas albilineans. Pieretti Isabelle, Cociancich Stéphane, Bolot Stéphanie, Carrère Sébastien, Morisset Alexandre, Rott Philippe, Royer Monique. 2015. Genes, 6 (3) : 714-733.

Genetic diversity of the world's largest oil palm (Elaeis guineensis Jacq.) field genebank accessions using microsatellite markers. Bakoumé Claude, Wickneswari Ratnam, Siju S., Rajanaidu Nookiah, Kushairi Ahmad, Billotte Norbert. 2015. Genetic Resources and Crop Evolution, 62 (3) : 349-360.

Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty. Carnes Jason, Anupama Atashi, Balmer Olivier, Jackson Andrew, Lewis Michael, Brown Rob, Cestari Igor, Desquesnes Marc, Gendrin Claire, Hertz-Fowler Christiane, Imamura Hideo, Ivens Alasdair, Koreny Ludek, Lai De-Hua, MacLeod Annette, McDermott Suzanne M., Merritt Chris, Monnerat Severine, Moon Wonjong, Myler Peter, Phan Isabelle, Ramasamy Gowthaman, Sivam Dhileep, Lun Zhao-Rong, Lukes Julius, Stuart Ken, Schnaufer Achim. 2015. PLoS Neglected Tropical Diseases, 9 (1):e3404, 21 p.

Genome-enabled phylogeographic investigation of the quarantine pathogen Ralstonia solanacearum race 3 biovar 2 and screening for sources of resistance against its Core effectors. Clarke Christopher R., Studholme David J., Hayes Byron W., Runde Brendan J., Weisberg Alexandra, Cai Rongman, Wroblewski Tadeusz, Daunay Marie-Christine, Wicker Emmanuel, Castillo Jose A., Vinatzer Boris A.. 2015. Phytopathology, 105 (5) : 597-607.

Identification of novel Bromus- and Trifolium-associated circular DNA viruses. Kraberger Simona, Farkas Kata, Bernardo Pauline, Booker Cameron, Argüello-Astorga Gerardo, Mesleard François, Martin Darren Patrick, Roumagnac Philippe, Varsani Arvind. 2015. Archives of Virology, 160 (5) : 1303-1311.

In Silico analysis of usher encoding genes in Klebsiella pneumoniae and characterization of their role in adhesion and colonization. Khater Fida, Balestrino Damien, Charbonnel Nicolas, Dufayard Jean-François, Brisse Sylvain, Forestier Christianne. 2015. PloS One, 10 (3):e0116215, 24 p.

La fièvre de la Vallée du Rift à Mayotte : de la surveillance à la détection du génome viral. Cetre-Sossah Catherine, Mérot Philippe, Cardinale Eric. 2015. Bulletin Epidémiologique (66) : 72-74.

Le pouvoir pathogène chez Ralstonia solanacearum phylotype II : génomique intégrative et paysages transcriptomiques en relation avec l'adaptation à l'hôte. Ailloud Florent. 2015. Saint-Denis : Université de la Réunion, 222 p. Thèse de doctorat : Microbiologie. Phytopathologie : Université de la Réunion

Mapping genetic determinants of viral traits with FST and quantitative trait locus (QTL) approaches. Doumayrou Juliette, Thébaud Gaël, Vuillaume Florence, Peterschmitt Michel, Urbino Cica. 2015. Virology, 484 : 346-353.

Mitochondrial genome sequence of the glass sponge Oopsacas minuta. Jourda Cyril, Santini Sébastien, Rocher Caroline, Le Bivic André, Claverie Jean-Michel. 2015. Genome Announcements, 3 (4):e00823-15, 2 p.

Mitochondrial, nuclear, and endosymbiotic diversity of two recently introduced populations of the invasive Bemisia tabaci MED species in La Réunion. Thierry Magalie, Bile Audrey, Grondin Martial, Reynaud Bernard, Becker Nathalie, Delatte Hélène. 2015. Insect Conservation and Diversity, 8 (1) : 71-80.

Molecular characterization and classification of Trypanosoma spp. Venezuelan isolates based on microsatellite markers and kinetoplast maxicircle genes. Sanchez E., Perrone Trina, Recchimuzzi G., Cardozo I., Biteau Nicolas, Aso Pedro Maria, Mijares Alfrédo, Baltz Théo, Berthier David, Balzano-Nogueira L., Gonzatti Marisa. 2015. Parasites and Vectors, 8 (536), 11 p.

Multilocus sequence analysis of xanthomonads causing bacterial spot of tomato and pepper plants reveals strains generated by recombination among species and recent global spread of Xanthomonas gardneri. Timilsina Sujan, Jibrin Mustafa O., Potnis Neha, Minsavage Gerald V., Kebede Misrak, Schwartz Allison, Bart Rebecca, Staskawicz Brian, Boyer Claudine, Vallad Gary E., Pruvost Olivier, Jones Jeffrey R., Goss Erica. 2015. Applied and Environmental Microbiology, 81 (4) : 1520-1529.

New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by Xanthomonas oryzae. Poulin Lucie, Grygiel Pierre, Magne Maxime, Gagnevin Lionel, Rodríguez-R Luis Miguel, Forero Serna Natalia, Zhao Shuai, El Rafil M., Dao S., Tekete C., Wonni Issa, Kolta O., Pruvost Olivier, Verdier Valérie, Vernière Christian, Koebnik Ralf. 2015. Applied and Environmental Microbiology, 81 (2) : 688-698.

Nuclear species-diagnostic SNP markers mined from 454 amplicon sequencing reveal admixture genomic structure of modern Citrus varieties. Curk Franck, Ancillo Gema, Ollitrault Frédérique, Perrier Xavier, Jacquemoud-Collet Jean-Pierre, Garcia-Lor Andrés, Navarro Luis, Ollitrault Patrick. 2015. PloS One, 10 (5):e0125628, 25 p.

Out of Himalaya: The impact of past Asian environmental changes on the evolutionary and biogeographical history of Dipodoidea (Rodentia). Pisano Julie, Condamine Fabien L., Lebedev Vladimir, Bannikova Anna, Quéré Jean-Pierre, Shenbrot Georgy I., Pagès Marie, Michaux Johan. 2015. Journal of Biogeography, 42 (5) : 856-870.

Pantoea coffeiphila sp. nov., cause of the potato taste of Arabica coffee from the African Great Lakes region. Gueule Dominique, Fourny Gérard, Ageron Elisabeth, Le Flèche-Matéos Anne, Vandenbogaert Mathias, Grimont Patrick A. D., Cilas Christian. 2015. International Journal of Systematic and Evolutionary Microbiology, 65 (1) : 23-29.

Parasite diversity and diversification: evolutionary ecology meets phylogenetics. Morand Serge (ed.), Krasnov Boris R. (ed.), Littlewood D. Timothy J. (ed.). 2015. Cambridge : Cambridge University Press, 508 p. ISBN 978-1-107-03765-6

Parasite species coexistence and the evolution of the parasite niche. Simkova Andrea, Morand Serge. 2015. In : Parasite diversity and diversification: evolutionary ecology meets phylogenetics. Morand Serge (ed.), Krasnov Boris R (ed.), Littlewood D. Timothy J. (ed). Cambridge : Cambridge University Press, 360-375. ISBN 978-1-107-03765-6

Patterns of genetic variation in the endangered European mink (Mustela lutreola L., 1761). Cabria Maria Teresa, Gonzalez Elena G., Gomez-Moliner Benjamin J., Michaux Johan, Skumatov Dimitry, Kranz Andreas, Fournier Pascal, Palazon Santiago, Zardoya Rafael. 2015. BMC Evolutionary Biology, 15 (141), 15 p.

Phylogenetic signals in ecological properties of parasites. Krasnov Boris R., Morand Serge, Poulin Robert. 2015. In : Parasite diversity and diversification: evolutionary ecology meets phylogenetics. Morand Serge (ed.), Krasnov Boris R (ed.), Littlewood D. Timothy J. (ed). Cambridge : Cambridge University Press, 351-359. ISBN 978-1-107-03765-6

Plant virus metagenomics: Advances in virus discovery. Roossinck Marilyn J., Martin Darren Patrick, Roumagnac Philippe. 2015. Phytopathology, 105 (6) : 716-727.

Progress on research on rodents and rodent-borne zoonoses in South-east Asia. Blasdell Kim R., Bordes Frédéric, Chaisiri Kittipong, Chaval Yannick, Claude Julien, Cosson Jean François, Latinne Alice, Michaux Johan, Morand Serge, Pagès Marie, Tran Annelise. 2015. Wildlife Research, 42 (2) : 98-107.

QueTAL: A suite of tools to classify and compare TAL effectors functionally and phylogenetically. Pérez-Quintero Alvaro L., Lamy Léo, Gordon Jonathan, Escalon Aline, Cunnac Sébastien, Szurek Boris, Gagnevin Lionel. 2015. Frontiers in Plant Science, 6 (545), 16 p.

Species and endosymbiont diversity of Bemisia tabaci (Homoptera: Aleyrodidae) on vegetable crops in Senegal. Delatte Hélène, Baudin Rémy, Becker Nathalie, Girard Anne-Laure, Ramatoulaye Sidebe Traoré, Lett Jean-Michel, Reynaud Bernard. 2015. Insect Science, 22 (3) : 386-398.

Tomato chlorotic mottle Guyane virus: A novel tomato-infecting bipartite begomovirus from French Guiana. Lett Jean-Michel, De Bruyn Alexandre, Hoareau Murielle, Ouattara Alassane, Claverie Sohini, Dalmon Anne, Laplace Damien, Lefeuvre Pierre, Hostachy Bruno. 2015. Archives of Virology, 160 (11) : 2887-2890.

The chloroplast genome of the hexaploid Spartina maritima (Poaceae, Chloridoideae): Comparative analyses and molecular dating. Rousseau-Gueutin Mathieu, Bellot Sidonie, Martin Guillaume, Boutte Julien, Chelaifa Houda, Lima Oscar, Michon-Coudouel Sophie, Naquin Delphine, Salmon Armel, Ainouche K., Ainouche Malika Lily. 2015. Molecular Phylogenetics and Evolution, 93 : 5-16.

The distribution of coumarins and furanocoumarins in Citrus species closely matches Citrus phylogeny and reflects the organization of biosynthetic pathways. Dugrand-Judek Audray, Olry Alexandre, Hehn Alain, Costantino Gilles, Ollitrault Patrick, Froelicher Yann, Bourgaud Frédéric. 2015. PloS One, 10 (11):e0142757, 25 p.

A duplex PCR assay for the detection of Ralstonia solanacearum Phylotype II strains in Musa spp. Cellier Gilles, Moreau Aurélie, Chabirand Aude, Hostachy Bruno, Ailloud Florent, Prior Philippe. 2015. PloS One, 10 (3):e0122182, 17 p.

A large-scale genomic approach affords unprecedented resolution for the molecular epidemiology and evolutionary history of contagious caprine pleuropneumonia. Dupuy Virginie, Verdier Axel, Thiaucourt François, Manso-Silvan Lucia. 2015. Veterinary Research, 46 (74), 11 p.

Abundance, distribution and function of Pisolithus albus and other ectomycorrhyzal fungi of ultramafic soils in New Caledonia. Jourand Philippe, Carriconde Fabian, Ducousso Marc, Majorel Clarisse, Hannibal Laure, Prin Yves, Lebrun Michel. 2014. In : Ectomycorrhizal symbioses in tropical and neotropical forests. Amadou M. Bâ ; Krista L. McGuire ; Abdala G. Diédhiou (eds.). USA : CRC press, 100-125. ISBN 978-1-4665-9468-5

Adaptive admixture in the West African bovine hybrid zone: Insight from the Borgou population. Flori Laurence, Thevenon Sophie, Dayo Guiguigbaza-Kossigan, Senou Marcel, Sylla Souleymane, Berthier David, Moazami Goudarzi Katayoun, Gautier Mathieu. 2014. Molecular Ecology, 23 (13) : 3241-3257.

Bat distribution size or shape as determinant of viral richness in African bats. Maganga Gaël Darren, Bourgarel Mathieu, Vallo Peter, Dallo Thierno D., Ngoagouni Carine, Drexler Jan Felix, Drosten Christian, Nakouné Emmanuel R., Leroy Eric M., Morand Serge. 2014. PloS One, 9 (6):e100172, 13 p.

"Candidatus Phytoplasma palmicola", associated with a lethal yellowing-type disease of coconut (Cocos nucifera L.) in Mozambique. Harrison Nigel, Davis Robert E., Oropeza Carlos, Helmick Ericka E., Narvaez Maria, Eden-Green Simon, Dollet Michel, Dickinson Mathhew. 2014. International Journal of Systematic and Evolutionary Microbiology, 64 (6) : 1890-1899.

Complete genome sequences of lineage III peste des petits ruminants viruses from the Middle East and East Africa. Muniraju Murali, Munir Muhammad, Banyard Ashley C., Ayebazibwe Chrisostom, Wensman Jonas, Zohari Siamak, Berg Mikael, Parthiban AravindhBabu R., Mahapatra Mana, Libeau Geneviève, Batten Carrie, Parida Satya. 2014. Genome Announcements, 2 (5):e01023, 2 p.

Comprehensive phylogenetic reconstructions of Rift Valley fever virus: The 2010 Northern Mauritania outbreak in the Camelus dromedarius species. El Mamy Ahmed Bezeid, Lo Modou Moustapha, Thiongane Yaya, Diop Mariame, Isselmou Ekatarina, Doumbia Baba, Ould Babah Mohamed A., El Arbi Sidi Mahmoud Ahmed Salem, Lancelot Renaud, Kane Yaghouba, Albina Emmanuel, Cetre-Sossah Catherine. 2014. Vector Borne and Zoonotic Diseases, 14 (12) : 856-861.

Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies. Mariac Cédric, Scarcelli Nora, Pouzadou Juliette, Barnaud Adeline, Billot Claire, Faye Adama, Kougbeadjo Ayite, Maillol Vincent, Martin Guillaume, Sabot François, Santoni Sylvain, Vigouroux Yves, Couvreur Thomas. 2014. Molecular Ecology Resources, 14 (6) : 1103-1113.

Distribution and diversity of rhizobial populations associated with Acacia senegal (L.) willd. provenances in senegalese arid and semiarid regions. Bakhoum Niokhor, Le Roux Christine, Diouf Diégane, Kane Aboubacry, Ndoye Fatou, Fall Dioumacor, Duponnois Robin, Noba Kandioura, Sylla Samba, Galiana Antoine. 2014. Open Journal of Forestry, 4 (2) : 136-143.

Diversity of Ralstonia solanacearum in French Guiana Expands Knowledge of the "Emerging Ecotype". Deberdt Peninna, Guyot Jean, Coranson Beaudu Régine, Launay Julie, Noreskal Manuella, Rivière Philippe, Vigné F., Laplace Damien, Lebreton Luc, Wicker Emmanuel. 2014. Phytopathology, 104 (6) : 586-596.

Diversité génétique, évolution et dissémination des bégomovirus africains dans les îles du sud-ouest de l'océan Indien. De Bruyn Alexandre. 2014. Saint-Denis : Université de la Réunion, 240 p. Thèse de doctorat : Sciences. Biologie moléculaire : Université de la Réunion

Diversité moléculaire du CSSV (Cocoa swollen shoot virus) et épidémiologie de la maladie du swollen shoot du cacaoyer (Theobroma cacao L.) en Côte d'Ivoire. Kouakou Koffie. 2014. Abidjan : Université Félix Houphouët Boigny, 141 p. Thèse de doctorat : Phytovirologie : Université Félix Houphouët Boigny

Dried fluid spots for peste des petits ruminants virus load evaluation allowing for non-invasive diagnosis and genotyping. Bhuiyan Ataur Rahman, Chowdhury Emdadul Haque, Kwiatek Olivier, Parvin Rokshana, Rahman Mushfiqur M., Islam Mohammad R., Albina Emmanuel, Libeau Geneviève. 2014. BMC Veterinary Research, 10 (247), 12 p.

Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Geering Andrew D., Maumus Florian, Copetti Michele, Choisne Nathalie, Zwickl Derrick J., Zytnicki Matthias, Mc Taggart Alistair R., Scalabrin Simone, Vezzulli Silvia, Wing Rod A., Quesneville Hadi, Teycheney Pierre-Yves. 2014. Nature Communications, 5 (2569), 11 p.

Evolutionary genetics underlying the spread of peste des petits ruminants virus. Libeau Geneviève, Diallo Adama, Parida Satya. 2014. Animal Frontiers, 4 (1) : 14-20.

Expansion of banana (Musa acuminata) gene families involved in ethylene biosynthesis and signalling after lineage-specific whole-genome duplications. Jourda Cyril, Cardi Céline, Mbéguié-A-Mbéguié Didier, Bocs Stéphanie, Garsmeur Olivier, D'Hont Angélique, Yahiaoui Nabila. 2014. New Phytologist, 202 (3) : 986-1000.

Genetic relationships of some Citrus genotypes based on the candidate iron chlorosis genes. Aka Kacar Yildiz, Simsek Özhan, Dönmez Dicle, Boncuk Melda, Yesiloglu Turgut, Ollitrault Patrick. 2014. Turkish Journal of Agriculture and Forestry, 38 (3) : 340-347.

Genetic structure of fragmented southern populations of African Cape buffalo (Syncerus caffer caffer). Smitz Nathalie, Cornélis Daniel, Chardonnet Philippe, Caron Alexandre, De Garine-Wichatitsky Michel, Jori Ferran, Mouton Alice, Latinne Alice, Pigneur Lise-Marie, Melletti Mario, Kanapeckas Kimberly L., Marescaux Jonathan, Lopes Pereira Carlos, Michaux Johan. 2014. BMC Evolutionary Biology, 14 (203), 19 p.

Genetic structure of the African buffalo (Syncerus caffer) at continental and population scales: an evolutionary and conservation approach. Smitz Nathalie, Cornélis Daniel, Chardonnet Philippe, Randi Ettore, Michaux Johan. 2014. In : Ecology, evolution and behaviour of wild cattle: implications for conservation. Melletti Mario (ed.), Burton James (ed.). Cambridge : Cambridge University Press, 410-430. ISBN 978-1-107-03664-2

Identification of an unclassified paramyxovirus in Coleura afra: A potential case of host specificity. Maganga Gaël Darren, Bourgarel Mathieu, Obame Nkoghe Judicael, N'Dilimabaka Nadine, Drosten Christian, Paupy Christophe, Morand Serge, Drexler Jan Felix, Leroy Eric M.. 2014. PloS One, 9 (12):e115588, 13 p.

Importance of accounting for phylogenetic dependence in multi-species mark-recapture studies. Abadi Fitsum, Barbraud Christophe, Besson Dominique, Bried Joël, Crochet Pierre-André, Delord Karine, Forcada Jaume, Grosbois Vladimir, Phillips Richard A., Sagar Paul, Thompson Paul M., Waugh Susan, Weimerskirch Henri, Wood Andrew G., Gimenez Olivier. 2014. Ecological Modelling, 273 : 236-241.

Low genetic diversity in Melanaphis sacchari Aphid populations at the worldwide scale. Nibouche Samuel, Fartek Benjamin, Mississipi Stelly, Delatte Hélène, Reynaud Bernard, Costet Laurent. 2014. PloS One, 9 (8):e106067, 10 p.

Moko disease-causing strains of #Ralstonia solanacearum" from Brazil extend known diversity in paraphyletic phylotype II. Albuquerque Greecy M.R., Santos Liliana A., Felix Kátia C.S., Rollemberg Christtianno L., Silva Adriano M.F., Souza Elineide B., Cellier Gilles, Prior Philippe, Mariano Rosa L.R.. 2014. Phytopathology, 104 (11) : 1175-1182.

Peste des petits ruminants Virus, Mauritania. El Arbi Sidi Mahmoud Ahmed Salem, El Mamy Ahmed Bezeid, Salami Habib, Isselmou Ekatarina, Kwiatek Olivier, Libeau Geneviève, Kane Yaghouba, Lancelot Renaud. 2014. Emerging Infectious Diseases, 20 (2) : 334-336.

Peste des petits ruminants virus. Diallo Adama, Libeau Geneviève. 2014. In : Manual of security sensitive microbes and toxins. Ed. Dongyou Liu. Boca Raton : CRC Press, 703-714. ISBN 978-1-4665-5396-5

Phylogenetic reconstruction methods: An overview. De Bruyn Alexandre, Martin Darren Patrick, Lefeuvre Pierre. 2014. In : Molecular Plant Taxonomy. by Pascale Besse (ed.). New York : Humana Press, 257-277. (Mehtods in Molecular Biology, 1115) ISBN 978-1-62703-766-2

Phylogenetic relationships and population structure of Ralstonia solanacearum isolated from diverse origins in Taiwan. Lin C.H., Tsai K.C., Prior Philippe, Wang Jaw-Fen. 2014. Plant Pathology, 63 (6) : 1395-1403.

Resolving the polyphyletic nature of Pyricularia (Pyriculariaceae). Klaubauf S., Tharreau Didier, Fournier Elisabeth, Crous Pedro W., De Vries Ronald P., Lebrun Marc-Henri. 2014. Studies in Mycology, 79 : 85-120.

Revision and phylogeny of the European species of the Eurytoma morio species group (Hymenoptera: Eurytomidae), parasitoids of bark and wood boring beetles. Delvare Gérard, Gebiola Marco, Zeiri Asma, Garonna A.P.. 2014. Zoological Journal of the Linnean Society, 171 (2) : 370-421.

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Wu Guohong Albert, Prochnik Simon, Jenkins Jerry, Salse Jérôme, Hellsten Uffe, Murat Florent, Perrier Xavier, Ruiz Manuel, Scalabrin Simone, Terol Javier F., Takita Marco Aurélio, Labadie Karine, Poulain Julie, Couloux Arnaud, Jabbari Kamel, Cattonaro Frederica, Del Fabbro Cristian, Pinosio Sara, Zuccolo Andrea, Chapman Jarrod, Grimwood Jane, Tadeo Francisco, Estornell Leandro H., Muñoz-Sanz Juan V., Ibáñez Victoria, Herrero-Ortega Amparo, Aleza Pablo, Pérez-Pérez Júlian, Ramón Daniel, Brunel Dominique, Luro François, Chen Chunxian, Farmerie William G., Desany Brian, Kodira Chinnappa, Mohiuddin Mohammed, Harkins Tim, Fredrikson Karin, Burns Paul, Lomsadze Alexandre, Borodovsky Mark, Reforgiato Giuseppe, Freitas-Astúa Juliana, Quetier Francis, Navarro Luis, Roose Mikeal L., Wincker Patrick, Schmutz Jeremy, Morgante Michele, Machado Marcos Antonio, Talon Manuel, Ollitrault Patrick, Gmitter Frederick G. Jr., Rokhsar Daniel S.. 2014. Nature Biotechnology, 32 : 656-662.

Soil Bradyrhizobium population response to invasion of a natural Quercus suber forest by the introduced nitrogen-fixing tree Acacia mearnsii in El Kala National Park, Algeria. Boudiaf Imene, Le Roux Christine, Baudoin Ezékiel, Galiana Antoine, Beddiar Arifa, Prin Yves, Duponnois Robin. 2014. Soil Biology and Biochemistry, 70 : 162-165.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Denoeud France, Carretero-Paulet Lorenzo, Dereeper Alexis, Droc Gaëtan, Guyot Romain, Pietrella Marco, Chunfang Zheng, Alberti Adriana, Anthony François, Aprea Giuseppe, Aury Jean-Marc, Bento Pascal, Bernard Maria, Bocs Stéphanie, Campa Claudine, Cenci Alberto, Combes Marie-Christine, Crouzillat Dominique, Da Silva Corinne, Daddiego Loretta, De Bellis Fabien, Dussert Stéphane, Garsmeur Olivier, Gayraud Thomas, Guignon Valentin, Jahn Katharina, Jamilloux Véronique, Joët Thierry, Labadie Karine, Tianying Lan, Leclercq Julie, Lepelley Maud, Leroy Thierry, Lei-Ting Li, Librado Pablo, Lopez Loredana, Muñoz Adriana, Noël Benjamin, Pallavicini Alberto, Perrotta Gaetano, Poncet Valérie, Pot David, Priyono, Rigoreau Michel, Rouard Mathieu, Rozas Julio, Tranchant-Dubreuil Christine, VanBuren Robert, Qiong Zhang, Andrade Alan A., Argout Xavier, Bertrand Benoît, De Kochko Alexandre, Graziosi Giorgio, Henry Robert, Jayarama, Ming Ray, Nagai Chifumi, Rounsley Steve, Sankoff David, Giuliano Giovanni, Albert Victor A., Wincker Patrick, Lashermes Philippe. 2014. Science, 345 (6201) : 1181-1184.

The common evolutionary history of badnaviruses and banana. Iskra Caruana Marie-Line, Duroy Pierre-Olivier, Chabannes Matthieu, Muller Emmanuelle. 2014. Infection, Genetics and Evolution, 21 : 83-89.

An evolutionary perspective on leaf economics: Phylogenetics of leaf mass per area in vascular plants. Flores Olivier, Garnier Eric, Wright Ian J., Reich Peter B., Pierce Simon, Diaz Sandra, Pakeman Robin J., Rusch Graciela M., Bernard-Verdier Maud, Testi Baptiste, Bakker Jan P., Bekker Renée M., Cerabolini Bruno E.L., Ceriani Roberta M., Cornu Guillaume, Cruz Pablo, Delcamp Matthieu, Dolezal Jiri, Eriksson Ove, Fayolle Adeline, Freitas Helena, Golodets Carly, Gourlet-Fleury Sylvie, Hodgson John, Brusa Guido, Kleyer Michael, Kunzmann Dieter, Lavorel Sandra, Papanastasis Vasilios P., Pérez-Harguindeguy Natalia, Vendramini Fernanda, Weiher Evan. 2014. Ecology and Evolution, 4 (14) : 2799-2811.

The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family. Martin Guillaume, Rousseau-Gueutin Mathieu, Cordonnier Solenn, Lima Oscar, Michon-Coudouel Sophie, Naquin Delphine, de Carvalho Julie Ferreira, Ainouche Malika Lily, Salmon Armel, Ainouche Abdelkader. 2014. Annals of Botany, 113 (7) : 1197-1210.

The genome of African yam (Dioscorea cayenensis-rotundata complex) hosts endogenous sequences from four distinct badnavirus species. Umber Marie, Filloux Denis, Muller Emmanuelle, Laboureau Nathalie, Galzi Serge, Roumagnac Philippe, Iskra Caruana Marie-Line, Pavis Claudie, Teycheney Pierre-Yves, Seal Susan. 2014. Molecular Plant Pathology, 15 (8) : 790-801.

The genomic substrate for adaptive radiation in African cichlid fish. Brawand David, Wagner Catherine E., Li Yang I., Malinsky Milan, Keller Irène, Fan Shaohua, Simakov Oleg, Ng Alvin Y., Lim Zhi Wei, Bezault Etienne, Turner-Maier Jason, Johnson Jeremy, Alcazar Rosa, Noh Hyun Ji, Russell Pamela, Aken Bronwen, Alföldi Jessica, Amemiya Chris, Azzouzi Naoual, Baroiller Jean-François, Barloy-Hubler Frédérique, Berlin Aaron, Bloomquist Ryan, Carleton Karen L., Conte Matthew A., D'Cotta Helena, Eshel Orly, Gaffney Leslie, Galibert Francis, Gante Hugo F., Gnerre Sante, Greuter Lucie, Guyon Richard, Haddad Nathalie S., Haerty Wilfried, Harris Rayna M., Hofmann Hans A., Hourlier Thibaut, Hulata Gideon, Jaffe David B., Lara Marcia, Lee Alison P., MacCallum Iain, Mwaiko Salome, Nikaido Masato, Nishihara Hidenori, Ozouf-Costaz Catherine, Penman David J., Przybylski Darius, Rakotomanga Michelle, Renn Suzy C. P., Ribeiro Filipe J., Ron Micha, Salzburger Walter, Sanchez-Pulido Luis, Santos Emilia, Searle Steve, Sharpe Ted, Swofford Ross, Tan Frederick J., Williams Louise, Young Sarah, Yin Shuangye, Okada Norihiro, Kocher Thomas D., Miska Eric A., Lander Eric S., Venkatesh Byrappa, Fernald Russell D., Meyer Axel, Ponting Chris P., Streelman J. Todd, Lindblad-Toh Kerstin, Seehausen Ole, Di Palma Frederica. 2014. Nature, 513 (7518) : 375-381.

The pathogenesis-related protein PR-4b from Theobroma cacao presents RNase activity, Ca2+ and Mg2+ dependent-DNase activity and antifungal action on Moniliophthora perniciosa. Menezes Sara Pereira, De Andrade Silva Edson Mario, Lima Eline Matos, Oliveira de Sousa Aurizângela, Andrade Bruno Silva, Santos Lima Livia, Gramacho Karina Peres, Da Silva Gesteira Abelmon, Priminho Pirovani Carlos, Micheli Fabienne. 2014. BMC Plant Biology, 14 (161), 21 p.

A possible scenario for the evolution of Banana streak virus in banana. Iskra Caruana Marie-Line, Chabannes Matthieu, Duroy Pierre-Olivier, Muller Emmanuelle. 2014. Virus Research, 186 : 155-162. International Plant Virus Epidemiology Symposium. 12, Arusha, Tanzanie, 28 Janvier 2013/1 Février 2013.

The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants. Porcel Betina M., Denoeud France, Opperdoes Fred, Noël Benjamin, Madoui Mohammed-Amine, Hammarton Tansy, Field Mark, Da Silva Corinne, Couloux Arnaud, Poulain Julie, Katinka Michael, Jabbari Kamel, Aury Jean-Marc, Campbell David A., Cintron Roxana, Dickens Nicolas, Docampo Roberto, Sturm Nancy R., Koumandou Lila, Fabre Sandrine, Flegontov Pavel, Lukes Julius, Michaeli Shula, Mottram Jeremy, Szoor Balazs, Zilberstein Dan, Bringaud Frédéric, Wincker Patrick, Dollet Michel. 2014. PLoS Genetics, 10 (2):e1004007, 24 p.

ASL/LBD Phylogeny Suggests that Genetic Mechanisms of Root Initiation Downstream of Auxin Are Distinct in Lycophytes and Euphyllophytes. Coudert Yoan, Diévart Anne, Droc Gaëtan, Gantet Pascal. 2013. Molecular Biology and Evolution, 30 (3) : 569-572.

Aux origines de la diversité de la patate douce (Ipomoea batatas) : une enquête phylogéographique en Amérique tropicale (aire d'origine) et en Océanie (aire d'introduction). Roullier Caroline. 2013. Montpellier : UM2, 289 p. Thèse de doctorat : Biologie des populations : Université Montpellier 2

Broad-coverage molecular epidemiology of Orientia tsutsugamushi in Thailand. Wongprompitak Patimaporn, Anukool Wichittra, Wongsawat Ekkarat, Silpasakorn Saowalak, Duong Veasna, Buchy Philippe, Morand Serge, Frutos Roger, Ekpo Pattama, Suputtamongkol Yupin. 2013. Infection, Genetics and Evolution, 15, spec. : 53-58. International Giardia and Cryptosporidium Conference. 4, Wellington, Afrique du Sud, 30 Janvier 2012/3 Février 2012.

Citrus (Rustaceae) SNP markers based on competitive allele-specific PCR; transferability across the aurantioideaz subfamily. Garcia-Lor Andrés, Ancillo Gema, Navarro Luis, Ollitrault Patrick. 2013. Applications in Plant Sciences, 1 (4), 6 p.

Comprehensive phylogenetic reconstructions of African swine fever virus: Proposal for a new classification and molecular dating of the virus. Michaud Vincent, Randriamparany Tantely, Albina Emmanuel. 2013. PloS One, 8 (7):e69662, 14 p.

Constraints on genome dynamics revealed from gene distribution among the Ralstonia solanacearum species. Lefeuvre Pierre, Cellier Gilles, Remenant Benoit, Chiroleu Frédéric, Prior Philippe. 2013. PloS One, 8 (5):e63155, 11 p.

Cytonuclear discordance among Southeast Asian black rats (Rattus rattus complex). Pagès Marie, Bazin Eric, Galan Maxime, Chaval Yannick, Claude Julien, Herbreteau Vincent, Michaux Johan, Piry Sylvain, Morand Serge, Cosson Jean François. 2013. Molecular Ecology, 22 (4) : 1019-1034.

Development of variable number of tandem repeats typing schemes for Ralstonia solanacearum, the agent of bacterial wilt, banana Moko disease and potato brown rot. N'Guessan Carine Aya, Brisse Sylvain, Le Roux-Nio Anne-Claire, Poussier Stéphane, Koné Daouda, Wicker Emmanuel. 2013. Journal of Microbiological Methods, 92 (3) : 366-374.

Diversity of Orientia tsutsugamushi clinical isolates in Cambodia reveals active selection and recombination process. Duong Veasna, Blassdell Kim, Thinh Thi Xuan May, Sreyrath Lay, Gavotte Laurent, Morand Serge, Frutos Roger, Buchy Philippe. 2013. Infection, Genetics and Evolution, 15, spec. : 25-34. International Giardia and Cryptosporidium Conference. 4, Wellington, Afrique du Sud, 30 Janvier 2012/3 Février 2012.

Diversité des symbioses ectomycorhiziennes dans les écosystèmes forestiers naturels sur sols ultramafiques de Nouvelle-Caledonie. Prin Yves, Ducousso Marc, Tassin Jacques, Béna Gilles, Jourand Philippe, Dumontet Vincent, Moulin Lionel, Contesto Céline, Ambrosi J.P., Chaintreuil Clémence, Dreyfus Bernard, Lebrun Michel. 2013. In : Des champignons symbiotiques contre la désertification : écosystèmes méditerranéens, tropicaux et insulaires. Duponnois Robin (ed.), Hafidi Mohamed (ed.), Ndoye Ibrahima (ed.), Ramanankierana Heriniaina (ed.), Bâ Amadou Moustapha (ed.). Marseille : IRD [Marseille], 444-473. ISBN 978-2-7592-1827-5

Diversité et structuration génétiques des Sapotacées endémiques de l'archipel des Mascareignes à différentes échelles spatiales et temporelles. Dafreville Stéphanie. 2013. Saint-Denis : Université de la Réunion, 104 p. Thèse de doctorat : Biologie des populations et écologie : Université de la Réunion

Evidence for novel hepaciviruses in rodents. Drexler Jan Felix, Corman Victor Max, Müller Marcel Alexander, Lukashev Alexander N., Gmyl Anatoly, Coutard Bruno, Adam Alexander, Ritz Daniel, Leijten Lonneke M., Van Riel Debby, Kallies Rene, Klose Stefan M., Gloza-Rausch Florian, Binger Tabea, Annan Augustina, Adu-Sarkodie Yaw, Oppong Samuel, Bourgarel Mathieu, Rupp Daniel, Hoffmann Bernd, Schlegel Mathias, Kümmerer Beate M., Krüger Detlev H., Schmidt-chanasit Jonas, Aguilar Setién Alvaro, Cottontail Veronika M., Hemachudha Thiravat, Wacharapluesadee Supaporn, Osterrieder Klaus, Bartenschlager Ralf, Matthee Sonja, Beer Martin, Kuilen Thijs, Reusken Chantal, Leroy Eric M., Ulrich Rainer G., Drosten Christian. 2013. PLoS Pathogens, 9 (6):e1003438, 17 p.

Evidence of gene flow between sympatric populations of the Middle East-Asia Minor 1 and Mediterranean putative species of Bemisia tabaci. Tahiri Abdessalem, Halkett Fabien, Granier Martine, Gueguen Gwénaelle, Peterschmitt Michel. 2013. Ecology and Evolution, 3 (8) : 2619-2633.

Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain CIO151. Arrieta-Ortiz Mario L., Rodríguez-R Luis Miguel, Pérez-Quintero Alvaro L., Poulin Lucie, Díaz Ana C., Arias Rojas Nathalia, Trujillo Cesar, Restrepo Benavides Mariana, Bart Rebecca, Boch Jen, Boureau Tristan, Darrasse Armelle, David Perrine, Dugé de Bernonville Thomas, Fontanilla Paula, Gagnevin Lionel, Guérin Fabien, Jacques Marie Agnès, Lauber Emmanuelle, Lefeuvre Pierre, Medina Cesar, Medina Edgar, Montenegro Nathaly, Munoz Alejandra, Noel Laurent D., Ortiz Quiñoes Juan F., Osorio Daniela, Pardo Carolina, Patil Prabhu B., Poussier Stéphane, Pruvost Olivier, Robène-Soustrade Isabelle, Ryan Robert P., Tabima Javier, Urrego Morales Osacar G., Vernière Christian, Carrère Sébastien, Verdier Valérie, Szurek Boris, Restrepo Silvia, López Camilo, Koebnik Ralf, Bernal Adriana Jimena. 2013. PloS One, 8 (11):e79704, 18 p.

Host associations, biogeography, and phylogenetics of avian malaria in southern African waterfowl. Cumming Graeme S., Shepard Eric, Okanga Sharon, Caron Alexandre, Ndlovu Mduduzi, Peters Jeffrey L.. 2013. Parasitology, 140 : 193-201.

Identification and characterisation of a highly divergent geminivirus: Evolutionary and taxonomic implications. Bernardo Pauline, Golden Michael, Akram Mohammad, Naimuddin, Nadarajan Nagaswamy, Fernandez Emmanuel, Granier Martine, Rebelo Anthony, Peterschmitt Michel, Martin Darren Patrick, Roumagnac Philippe. 2013. Virus Research, 177 (1) : 35-45.

Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing. Duan Cuifang, Argout Xavier, Gebelin Virginie, Summo Marilyne, Dufayard Jean-François, Leclercq Julie, Kuswanhadi, Piyatrakul Piyanuch, Pirrello Julien, Rio Maryannick, Champion Anthony, Montoro Pascal. 2013. BMC Genomics, 14 (30), 22 p.

Le criquet rhodanien. Tatin Laurent, Streiff Réjane, Foucart Antoine, Besnard Aurélien. 2013. In : Ecologie et conservation d'une steppe méditerranéenne : la plaine de la Crau. Tatin Laurent (ed.), Wolff Axel (ed.), Boutin Jean (ed.), Colliot Etienne (ed.), Dutoit Thierry (ed.). Versailles : Ed. Quae, 93-102. ISBN 978-2-7592-2082-3

Molecular characterization of fungal biodiversity and early identification of fungi associated with oil palm decay, particularly Ganoderma Boninense. Zaremski Alba, Lecoeur Emeric, Breton Frédéric, De Franqueville Hubert. 2013. Pro Ligno, 9 (2) : 3-21.

Molecular epidemiology of Orientia tsutsugamushi in Cambodia and Central Vietnam reveals a broad region-wide genetic diversity. Duong Veasna, Thinh Thi Xuan May, Blassdell Kim, Le Viet Lo, Morvan Claire, Sreyrath Lay, Anukool Wichittra, Wongprompitak Patimaporn, Suputtamongkol Yupin, Laurent Denis, Richner Beat, Ra Chheang, Bui Trong Chien, Frutos Roger, Buchy Philippe. 2013. Infection, Genetics and Evolution, 15, spec. : 35-42. International Giardia and Cryptosporidium Conference. 4, Wellington, Afrique du Sud, 30 Janvier 2012/3 Février 2012.

New avian paramyxoviruses type I strains identified in Africa provide new outcomes for phylogeny reconstruction and genotype classification. Servan de Almeida Renata, Hammoumi Saliha, Gil Patricia, Briand François-Xavier, Molia Sophie, Gaidet Nicolas, Cappelle Julien, Chevalier Véronique, Balança Gilles, Traoré Abdallah, Grillet Colette, Fridolin Maminiaina Olivier, Guendouz Samia, Dakouo Martin, Samake Kassim, Bezeid Ould El Mamy, Diarra Abbas, Chaka Hassen, Goutard Flavie, Thompson Peter, Martinez Dominique, Jestin Véronique, Albina Emmanuel. 2013. PloS One, 8 (10):e76413, 16 p.

Organisation et évolution de familles de gènes impliqués dans la maturation du fruit chez le bananier. Jourda Cyril. 2013. Montpellier : UM2, 353 p. Thèse de doctorat : Systèmes intégrés en biologie, agronomie, géosciences, hydrosciences et environnement (SIBAGHE). Biologie intégrative des plantes : Université Montpellier 2

Organización de la diversidad genética de los cítricos. Garcia Lor Andrés. 2013. Valence : Universidad Politecnica de Valencia, 259 p. Tesis doctoral : Universidad Politecnica de Valencia

Pan-African genetic structure in the African Buffalo (Syncerus caffer): Investigating intraspecific divergence. Smitz Nathalie, Berthouly Cécile, Cornélis Daniel, Heller Rasmus, Van Hooft Pim, Chardonnet Philippe, Caron Alexandre, Prins Herbert, Van Vuuren Bettine Jansen, De Longh Hans, Michaux Johan. 2013. PloS One, 8 (2):e56325, 17 p.

Phylogénie, structure génétique et diversité de virulence de Ralstonia solanacearum Yabucchi et al. (1995),[Burkhoderiacées], agent du flétrissement bactérien en Côte d'Ivoire. N'Guessan Carine Aya. 2013. Abidjan : Université d'Abidjan, 248 p. Thèse de doctorat : Phytopathologie : Université de Cocody

Systématique et évolution du genre Psychotria (Rubiaceae) en Nouvelle-Calédonie. Barrabé Laure. 2013. Nouméa : UNC, 367 p. Thèse de doctorat : ès Physiologie et biologie des organismes - Populations - Interactions : Université de la Nouvelle-Calédonie