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Linking genetic markers and crop model parameters using neural networks to enhance genomic prediction of integrative traits. Larue Florian, Rouan Lauriane, Pot David, Rami Jean-François, Luquet Delphine, Beurier Grégory. 2024. Frontiers in Plant Science, 15:1393965, 13 p.

Screening of triploid banana population under natural and controlled black sigatoka disease for genomic selection. Mbo Nkoulou Luther Fort, Fifen Nkouandou Yacouba, Bille Ngalle Hermine, Cros David, Martin Guillaume, Molo Thierry, Ngombo Eya'a Clement, Essome Charles, Zandjanakou-Tachin Martine, Dégbey Hervé, Bell Joseph Martin, Achigan-Dako Enoch G.. 2024. Plant Disease, 108 (7) : 2006-2016.

Analysis of genetic diversity and agronomic variation in banana sub-populations for genomic selection under drought stress in Southern Benin. Fort Mbo Nkoulou Luther, Archange Tchinda Ninla Lauriane, Cros David, Martin Guillaume, Ndiang Zenadou, Houegban Jordan, Bille Ngalle Hermine, Martin Bell Joseph, Achigan-Dako Enoch G.. 2023. Gene, 859:147210, 12 p.

Genomic prediction in a multi-generation Eucalyptus globulus breeding population. Haristoy Geoffrey, Bouffier Laurent, Fontes Luis, Leal Luis, Paiva Jorge A. P., Pina João Pedro, Gion Jean-Marc. 2023. Tree Genetics and Genomes, 19:8, 17 p.

Mate selection: A useful approach to maximize genetic gain and control inbreeding in genomic and conventional oil palm (Elaeis guineensis Jacq.) hybrid breeding. Tchounke Billy, Sanchez Leopoldo, Bell Joseph Martin, Cros David. 2023. PLoS Computational Biology, 19 (9):e1010290, 27 p.

Optimization of multi-generation multi-location genomic prediction models for recurrent genomic selection in an upland rice population. De Verdal Hugues, Baertschi Cédric, Frouin Julien, Quintero Constanza, Ospina Yolima, Alvarez María Fernanda, Cao Tuong-Vi, Bartholome Jérôme, Grenier Cécile. 2023. Rice, 16:43, 18 p.

Genomic selection in tropical perennial crops and plantation trees: A review. Seyum Essubalew Getachew, Bille Ngalle Hermine, Abtew Wosene Gebreselassie, Munyengwa Norman, Bell Joseph Martin, Cros David. 2022. Molecular Breeding, 42:58, 23 p.

Improving the accuracy of genomic predictions in an outcrossing species with hybrid cultivars between heterozygote parents: A case study of oil palm (Elaeis guineensis Jacq.). Nyouma Achille, Bell Joseph Martin, Jacob Florence, Riou Virginie, Manez Aurore, Pomiès Virginie, Domonhedo Hubert, Arifiyanto Deni, Cochard Benoît, Durand-Gasselin Tristan, Cros David. 2022. Molecular Genetics and Genomics, 297 : 523-533.

Perspective for genomic-enabled prediction against black sigatoka disease and drought stress in polyploid species. Mbo Nkoulou Luther Fort, Ngalle Bille Hermine, Cros David, Adje Charlotte O.A., Fassinou Nicodeme V. H., Bell Joseph, Achigan-Dako Enoch G.. 2022. Frontiers in Plant Science, 13, 18 p.

Genomic prediction of arsenic tolerance and grain yield in rice: Contribution of trait-specific markers and multi-environment models. Ahmadi Nourollah, Cao Tuong-Vi, Frouin Julien, Norton Gareth J., Price Adam H.. 2021. Rice Science, 28 (3) : 268-278.

Favorable conditions for genomic evaluation to outperform classical pedigree evaluation highlighted by a proof-of-concept study in poplar. Pégard Marie, Segura Vincent, Munoz Facundo, Bastien Catherine, Jorge Véronique, Sanchez Leopoldo. 2020. Frontiers in Plant Science, 11:581954, 23 p.

Genomic predictions improve clonal selection in oil palm (Elaeis guineensis Jacq.) hybrids. Nyouma Achille, Bell Joseph Martin, Jacob Florence, Riou Virginie, Manez Aurore, Pomiès Virginie, Nodichao Leifi, Syahputra Indra, Affandi Dadang, Cochard Benoît, Durand-Gasselin Tristan, Cros David. 2020. Plant Science, 299:110547, 12 p.

Genomic predictions improve the performance of clonal cultivars in oil palm. [PE0834]. Nyouma Achille, Jacob Florence, Bell Joseph Martin, Syahputra Indra, Affandi Dadang, Cochard Benoît, Durand-Gasselin Tristan, Cros David. 2020. . San Diego : PAG, 1 poster Plant and Animal Genome conference. 27, San Diego, États-Unis, 10 Janvier 2020/15 Janvier 2020.

Inbreeding management and optimization of genetic gain with phenotypic and genomic selection in oil palm (Elaeis guineensis)[W776]. Cros David, Tchounke Billy, Sanchez Leopoldo. 2020. In : Abstracts workshops of the PAG XXVIII. San Diego : PAG, Résumé, 1 p. Plant and Animal Genome. 28, San Diego, États-Unis, 11 Janvier 2020/15 Janvier 2020.

Selecting for water use efficiency, wood chemical traits and biomass with genomic selection in a Eucalyptus breeding program. Bouvet Jean-Marc, Makouanzi Garel Chrissy Ekomono, Brendel Olivier, Laclau Jean-Paul, Bouillet Jean-Pierre, Epron Daniel. 2020. Forest Ecology and Management, 465:118092, 10 p.

Advances in oil palm genomic selection. Cros David, Jacob Florence, Nyouma Achille, Tchounke Billy, Afandi Dadang, Syahputra Indra, Cochard Benoît. 2019. . MPOB. Kuala Lumpur : MPOB, 8 p. MPOB International Palm Oil Congress and Exhibition (PIPOC 2019), Kuala Lumpur, Malaisie, 19 Novembre 2019/21 Novembre 2019.

Are genetics and genomics helpful to improve feed efficiency in Nile tilapia Oreochromis niloticus? De Verdal Hugues, Vandeputte Marc, Allal François, Besson M., Mekkawy Wagdy, De Koning Dirk-Jan, Benzie John A.H.. 2019. In : Aquaculture Europe 2019 Abstracts. EAS. Berlin : European Aquaculture Society, 316-317. Aquaculture Europe 2019 Our future growing from water, Berlin, Allemagne, 7 Octobre 2019/10 Octobre 2019.

From mass selection to genomic selection: one century of breeding for quantitative yield components of oil palm (Elaeis guineensis Jacq.). Nyouma Achille, Bell Joseph Martin, Jacob Florence, Cros David. 2019. Tree Genetics and Genomes, 15 (5):69, 16 p.

Genomic prediction offers the most effective marker assisted breeding approach for ability to prevent arsenic accumulation in rice grains. Frouin Julien, Labeyrie Axel, Boisnard Arnaud, Sacchi Gian Attilio, Ahmadi Nourollah. 2019. PloS One, 14 (6):e0217516, 22 p.

Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice. Bhandari Aditi, Bartholome Jérôme, Cao-Hamadou Tuong-Vi, Kumari Nilima, Frouin Julien, Kumar Arvind, Ahmadi Nourollah. 2019. PloS One, 14 (5), e0208871, 21 p.

Within-family genomic selection in rubber tree (Hevea brasiliensis) increases genetic gain for rubber production. Cros David, Mbo-Nkoulou Luther, Bell Joseph Martin, Oum Jean, Masson Aurélien, Soumahoro Mouman, Tran Dinh Minh, Achour Zeineb, Le Guen Vincent, Clément-Demange André. 2019. Industrial Crops and Products, 138:111464, 13 p.

Efficiency of multi-trait genomic selection in two contexts of Eucalyptus breeding. Bouvet Jean-Marc, Rambolarimanana Tahina, Makouanzi Garel, Ramamonjisoa Lolona, Leong Pock Tsy Jean-Michel, Cao-Hamadou Tuong-Vi, Vigneron Philippe. 2018. In : Eucalyptus 2018: Managing Eucalyptus plantation under global changes. Abstracts book. CIRAD, IUFRO, MUSE. Montpellier : CIRAD, Résumé, p. 84. ISBN 978-2-87614-743-0 Eucalyptus 2018, Montpellier, France, 17 Septembre 2018/21 Septembre 2018.

Genomic prediction accounting for genotype by environment interaction offers an effective framework for breeding simultaneously for adaptation to an abiotic stress and performance under normal cropping conditions in rice. Ben Hassen Manel, Bartholome Jérôme, Valè Giampiero, Cao Tuong-Vi, Ahmadi Nourollah. 2018. G3 - Genes Genomes Genetics, 8 (7) : 2319-2332.

Genomic selection in rice: lessons learned from a large set of proof-of-concept studies embedded in current breeding programs. Ahmadi Nourollah, Bartholome Jérôme, Cao Tuong-Vi, Courtois Brigitte, Grenier Cécile, Taillebois James E.. 2018. . IRRI. Singapore : IRRI, Résumé, 1 p. International Rice Congress 2018 (IRC 2018). 5, Singapour, Singapour, 15 Octobre 2018/17 Octobre 2018.

Performance of multi-trait genomic selection for Eucalyptus robusta breeding program. Rambolarimanana Herintahina, Ramamonjisoa Lolona, Verhaegen Daniel, Leong Pock Tsy Jean-Michel, Jacquin Laval, Cao-Hamadou Tuong-Vi, Makouanzi Chrissy Garel, Bouvet Jean-Marc. 2018. Tree Genetics and Genomes, 14 (5):71, 13 p.

Rice diversity panel provides accurate genomic predictions for complex traits in the progenies of biparental crosses involving members of the panel. Ben Hassen Manel, Cao Tuong-Vi, Bartholome Jérôme, Orasen Gabriele, Colombi C., Rakotomalala J., Razafinimpiasa Lisy, Bertone C., Biselli Chiara, Volante Andrea, Desiderio Francesca, Jacquin Laval, Valè Giampiero, Ahmadi Nourollah. 2018. Theoretical and Applied Genetics, 131 (2) : 417-435.

Training genomic selection models across several breeding cycles increases genetic gain in oil palm in silico study. Cros David, Tchounke Billy, Nkague-Nkamba Léontine. 2018. Molecular Breeding, 38:89, 12 p.

breedgenr: a non-parametric based breeding program simulator with applications on rice. Bartholome Jérôme, Jacquin Laval, Cao Tuong-Vi, Ahmadi Nourollah. 2018. . IRRI. Singapour : IRRI, Résumé, 1 p. International Rice Congress 2018 (IRC 2018), Singapour, Singapour, 15 Octobre 2018/17 Octobre 2018.

Agrigenomics in the breeder's toolbox: latest advances towards an optimal implementation of genomic selection in oil palm. Jacob Florence, Cros David, Cochard Benoît, Durand-Gasselin Tristan. 2017. . Kuala Lumpur : Malaysian palm oil board-International Society for Oil Palm Breeders, 21 p. International Seminar on 100 Years of Technological Advancement in Oil Palm Breeding and Seed Production, Kuala Lumpur, Malaisie, 13 Novembre 2017/13 Novembre 2017.

Genomic preselection with genotyping-bysequencing increases performance of commercial oil palm hybrid crosses. Cros David, Bocs Stéphanie, Riou Virginie, Ortega Abboud Enrique, Tisne Sébastien, Argout Xavier, Pomies Virginie, Nodichao Leifi, Lubis Zulkifli, Cochard Benoît, Durand-Gasselin Tristan. 2017. BMC Genomics, 18:839, 17 p.

Improving accuracy of breeding values by incorporating genomic information in spatial-competition mixed models. Cappa Eduardo Pablo, El-Kassaby Yousry A., Munoz Facundo, Garcia Martín N., Villalba Pamela V., Klápste Jaroslav, Marcucci Poltri Susana N.. 2017. Molecular Breeding, 37:125, 13 p.

Molecular genetics and breeding. Soh Aik Chin, Mayes Sean, Roberts Jeremy, Zaki Noorhariza Mohd, Madon Maria, Schwarzacher Trude, Heslop-Harrison Pat, Ithnin Maizura Bint, Din Amiruddin Mohd, Ramli Umi Salamah, Othman Abrizah, Zulkifli Yaakub, Low Eng Ti Leslie, Ong-Abdullah Meilina, Singh Rajinder, Teh Chee Keng, Kwong Qi Bin, Ong Ail Ling, Mohamed Mohaimi, Apparow Sukganah, Chew Fook Tim, Appleton David Ross, Kulaveerasingam Harikrishna, Teh Huey Fang, Mebus Katharina, Neoh Bee Keat, Ooi Tony Eng Keong, Wong Yick Ching, Cros David. 2017. In : Oil palm breeding : genetics and genomics. Soh Aik Chin (ed.), Mayes Sean (ed.) , Roberts Jeremy A. (ed.). Boca Raton : CRC Press, 225-281. ISBN 978-1-4987-1544-7

Training genomic selection model across multiple breeding cycles increases genetic gain in oil palm. Cros David, Tchounke Billy, Nkague-Nkamba Léontine. 2017. . Paris : INRA, 1 poster Séminaire SelGen 2017, "La sélection génomique - bilan et perspectives", INRA, Paris, France, 28 Septembre 2017/29 Septembre 2017.

Diversity panel provides accurate genomic estimate of breeding values for complex traits, within the progenies of biparental crosses involving members of the panel. Ben Hassen Manel, Cao Tuong-Vi, Jacquin Laval, Colombi C., Orasen Gabriele, Rakotomalala J., Razafinimpiasa Lisy, Bertone C., Volante Andrea, Biselli Chiara, Valè Giampiero, Ahmadi Nourollah. 2016. . Montpellier : CIRAD-Centre français du riz, Résumé, 1 p. International Symposium on Rice Functional Genomics. 14, Montpellier, France, 26 Septembre 2016/29 Septembre 2016.

Empirical prediction accuracy of genomic selection between experimental designs and generations in oil palm. [W667]. Cros David, Riou Virginie, Tisne Sébastien, Sidibé-Bocs Stéphanie, Ortega Abboud Enrique, Argout Xavier, Pomiès Virginie, Nodichao Leifi, Lubis Zulkifli, Cochard Benoît, Durand-Gasselin Tristan. 2016. . San Diego : PAG, Résumé, 1 p. Plant and Animal Genome Conference. 24, San Diego, États-Unis, 9 Janvier 2016/13 Janvier 2016.

Multivariate genomic model improves analysis of oil palm (Elaeis guineensis Jacq.) progeny tests. Marchal Alexandre, Legarra Andrés, Tisne Sébastien, Carasco-Lacombe Catherine, Manez Aurore, Suryana Edyana, Omoré Alphonse, Nouy Bruno, Durand-Gasselin Tristan, Sanchez Leopoldo, Bouvet Jean-Marc, Cros David. 2016. Molecular Breeding, 36 (1):2, 13 p.