Résultats pour Sujet : "U60 - Sciences de la vie et de la Terre"

Complete genome sequence of a copper-resistant Xanthomonas campestris pv. campestris strain isolated from broccoli in Mauritius suggests adaptive gene gain through horizontal gene transfer. Boyer Claudine, Lefeuvre Pierre, Richard Damien, Lobin Kanta Kumar, Pruvost Olivier. 2024. Phytopathology, 114 (2) : 328-333.

Distinct communities and differing dispersal routes in bacteria and fungi of honey bees, honey, and flowers. Tiusanen Mikko, Becker-Scarpitta Antoine, Wirta Helena. 2024. Microbial Ecology, 87:100, 10 p.

How collectively integrated are ecological communities? Zelnik Yuval R., Galiana Nuria, Barbier Matthieu, Loreau Michel, Galbraith Eric, Arnoldi Jean-François. 2024. Ecology Letters, 27 (1):e14358, 14 p.

International committee on systematics of prokaryotes subcommittee on the taxonomy of mollicutes: Minutes of the closed meeting, 7 July 2024, Gran Canaria, Spain. Gasparich Gail, Kuo Chih-Horng, Manso-Silvan Lucia, Blanchard Alain, Balish Mitchell. 2024. International Journal of Systematic and Evolutionary Microbiology, 74:006576, 3 p.

mbctools: A user-friendly metabarcoding and cross-platform pipeline for analyzing multiple amplicon sequencing data across a large diversity of organisms. Barnabé Christian, Sempere Marie-Elyse, Manzanilla Vincent, Moo-Millan Joel, Amblard-Rambert Antoine, Waleckx Etienne. 2024. Peer Community Journal, 4:e114, 13 p.

A taxonomy of multiple stable states in complex ecological communities. Aguadé-Gorgorió Guim, Arnoldi Jean-François, Barbier Matthieu, Kéfi Sonia. 2024. Ecology Letters, 27 (4):e14413, 14 p.

African army ants at the forefront of virome surveillance in a remote tropical forest. Fritz Matthieu, Reggiardo Bérénice, Filloux Denis, Claude Lisa, Fernandez Emmanuel, Mahe Frédéric, Kraberger Simona, Custer Joy M., Becquart Pierre, Mebaley Telsta Ndong, Kombila Linda Bohou, Lenguiya Léadisaelle Hosanna, Boundenga Larson, Mombo Illich Manfred, Maganga Gaël Darren, Niama Fabien Roch, Koumba Jean-Sylvain, Ogliastro Mylène, Yvon Michel, Martin Darren Patrick, Blanc Stéphane, Varsani Arvind, Leroy Eric M., Roumagnac Philippe. 2023. Peer Community Journal, 3:e24, 21 p.

Antimicrobial resistance dissemination associated with intensive animal production practices in Argentina: A systematic review and meta-analysis. Prack McCormick Barbara, Quiroga María P., Álvarez Verónica E., Centrón Daniela, Tittonell Pablo. 2023. Revista Argentina de Microbiología, 55 (1) : 25-42.

Combining fusion of cells with CRISPR-Cas9 editing for the cloning of large DNA fragments or complete bacterial genomes in yeast. Guesdon Gabrielle, Gourgues Géraldine, Rideau Fabien, Ipoutcha Thomas, Manso-Silvan Lucia, Jules Matthieu, Sirand-Pugnet Pascal, Blanchard Alain, Lartigue Carole. 2023. ACS Synthetic Biology, 12 (11) : 3252-3266.

Constitutive proteins of lumpy skin disease virion assessed by next-generation proteomics. Schlosser-Perrin Léo, Holzmuller Philippe, Fernandez Bernard, Miotello Guylaine, Dahmani Noureddine, Neyret Aymeric, Bertagnoli Stéphane, Armengaud Jean, Caufour Philippe. 2023. Journal of Virology, 97 (10), 32 p.

Cytogenotoxicity screening of urban and rural marshes: An integrated in vivo approach coupling fish and plant‐based tests adapted for low‐income countries. Pepey Elodie, Conejero Geneviève, Ndrianaivo Elia Njara, Verdeil Jean-Luc, Mortillaro Jean-Michel, Boggio David, Raliniaina Modestine, Pouil Simon. 2023. Environmental Toxicology and Chemistry, 42 (6) : 1266-1275.

Draft genome sequences of Neurospora crassa clade B, isolated from burned Cytisus sp. plants in France. Bonometti Lucas, De Bellis Fabien, Cros-Arteil Sandrine, Gladieux Pierre, Stajich Jason E., Gueret Elise. 2023. Microbiology Resource Announcements, 12 (12), 3 p.

Evaluation of 96‐well high‐throughput DNA extraction methods for 16S rRNA gene metabarcoding. Chapuis Marie-Pierre, Benoit Laure, Galan Maxime. 2023. Molecular Ecology Resources, 23 (7) : 1509-1525.

Exploring the phytobeneficial and biocontrol capacities of endophytic bacteria isolated from hybrid vanilla pods. Lalanne-Tisné Guillaume, Barral Bastien, Taibi Ahmed, Kpatolo Coulibaly Zana, Burguet Pierre, Rasoarahona Felah, Quinton loic, Meile Jean-Christophe, Boubakri Hasna, Kodja Hippolyte. 2023. Microorganisms, 11 (7):1754, 18 p.

Interpreting phylogenetic placements for taxonomic assignment of environmental DNA. Ewers Isabelle, Rajter Lubomir, Czech Lucas, Mahe Frédéric, Stamatakis Alexandros, Dunthorn Micah. 2023. Journal of Eukaryotic Microbiology, 70 (5):12990, 10 p.

Structure and chemical composition of soil C‑Rich Al−Si−Fe coprecipitates at nanometer scale. Jamoteau Floriane, Cam Nithavong, Levard Clément, Doelsch Emmanuel, Gassier Ghislain, Duvivier Adrien, Boulineau Adrien, Saint-Antonin François, Basile-Doelsch Isabelle. 2023. Environmental Science and Technology, 57 (49) : 20615-20626.

Thallium long-term fate from rock-deposit to soil: The jas roux sulfosalt natural analogue. Rose Jérôme, Chaurand Perrine, Dentant Cédric, Angeletti Bernard, Borschneck Daniel, Kieffer Isabelle, Proux Olivier, Bonet Richard, Auffan Mélanie, Levard Clément, Fehlauer Till, Collin Blanche, Doelsch Emmanuel. 2023. ACS Earth and Space Chemistry, 7 (10), n.spéc. Environmental Redox Processes and Contaminant and Nutrient Dynamics : 1848-1857.

Trait-independent habitat associations explain low co-occurrence in native and exotic birds on a tropical volcanic island. Barnagaud Jean-Yves, Flores Olivier, Balent Gérard, Tassin Jacques, Barbaro Luc. 2023. Ecology and Evolution, 13 (7):e10322, 16 p.

When morphology does not fit the genomes: the case of rodent olfaction. Martinez Quentin, Courcelle Maxime, Douzery Emmanuel, Fabre Pierre-Henri. 2023. Biology Letters, 19 (4):20230080, 7 p.

Whole-genome sequences of Bipolaris bicolor, Curvularia hawaiiensis, Curvularia spicifera, and Exserohilum rostratum isolated from rice in Burkina Faso, France, Mali, and Pakistan. Kaboré Kouka Hilaire, Kassankogno Abalo Itolou, Adreit Henri, Ravel Sébastien, Charriat Florian, Diagne Diariatou, Lebrun Marc-Henri, Tharreau Didier. 2023. Mycology, 12 (11), 4 p.

The compact genome of the sponge Oopsacas minuta (Hexactinellida) is lacking key metazoan core genes. Santini Sébastien, Schenkelaars Quentin, Jourda Cyril, Duchesne Marc, Belahbib Hassiba, Rocher Caroline, Selva Marjorie, Riesgo Ana, Vervoort Michel, Leys Sally P., Kodjabachian Laurent, Le Bivic André, Borchiellini Carole, Claverie Jean-Michel, Renard Emmanuelle. 2023. BMC Biology, 21:139, 21 p.

A network approach to decipher the dynamics of Lysobacteraceae plasmid gene sharing. Richard Damien, Roumagnac Philippe, Pruvost Olivier, Lefeuvre Pierre. 2023. Molecular Ecology, 32 (10), n.spéc. Evolutionary ecology of human associated microbes : 2660-2673.

A tell tail sign: A conserved C-terminal tail-anchor domain targets a subset of pathogen effectors to the plant endoplasmic reticulum. Breeze Emily, Vale Victoria, McLellan Hazel, Pecrix Yann, Godiard Laurence, Grant Murray, Frigerio Lorenzo. 2023. Journal of Experimental Botany, 74 (10) : 3188-3202.

Editorial for the special issue "Microbial Nonribosomal Synthesis of Secondary Metabolites". Cociancich Stéphane, Leclère Valérie. 2022. Microorganisms, 10 (5), n.spéc. Microbial Non-Ribosomal Synthesis of Secondary Metabolites:1064, 4 p.

Genomicus in 2022: Comparative tools for thousands of genomes and reconstructed ancestors. Nguyen Nga Thi Thuy, Vincens Pierre, Dufayard Jean François, Roest Crollius Hugues, Louis Alexandra. 2022. Nucleic Acids Research, 50 (1) : 1025-1031.

Invasions of ecological communities: Hints of impacts in the invader's growth rate. Arnoldi Jean-François, Barbier Matthieu, Kelly Ruth, Barabás György, Jackson Andrew. 2022. Methods in Ecology and Evolution, 13 (1) : 167-182.

A curated dataset of peste des petits ruminants virus sequences for molecular epidemiological analyses. Baron Michael D., Bataille Arnaud. 2022. PloS One, 17 (2):e0263616, 22 p.

pr2-primers: An 18S rRNA primer database for protists. Vaulot Daniel, Geisen Stefan, Mahe Frédéric, Bass David. 2022. Molecular Ecology Resources, 22 (1) : 168-179.

Free-living, psychrotrophic bacteria of the Genus Psychrobacter are descendants of pathobionts. Welter Daphne K., Ruaud Albane, Henseler Zachariah M., De Jong Hannah N., Van Coeverden de Groot Peter, Michaux Johan, Gormezano Linda, Waters Jillian L., Youngblut Nicholas D., Ley Ruth E.. 2021. mSystems, 6 (2), 20 p.

Identification of a key protein set involved in Moniliophthora perniciosa necrotrophic mycelium and basidiocarp development. Santos Gomes Dayane, De Andrade Silva Edson Mario, De Andrade Rosa Emily Caroline, Silva Gualberto Nina Gabriela, de Jesus Souza Átila Monaliza, Santos Gesivaldo, Priminho Pirovani Carlos, Micheli Fabienne. 2021. Fungal Genetics and Biology, 157:103635, 16 p.

Integrative taxonomy confirms that Gregarina garnhami and G. acridiorum (Apicomplexa, Gregarinidae), parasites of Schistocerca gregaria and Locusta migratoria (Insecta, Orthoptera), are distinct species. Florent Isabelle, Chapuis Marie-Pierre, Labat Amandine, Boisard Julie, Leménager Nicolas, Michel Bruno, Desportes-Livage Isabelle. 2021. Parasite, 28:12, 14 p.

Periodontitis associates with species-specific gene expression of the oral microbiota. Belstrom Daniel, Constancias Florentin, Drautz-Moses Daniela I., Schuster Stephan C., Veleba Mark, Mahé Frédéric, Givskov Michael. 2021. npj Biofilms and Microbiomes, 7:76, 10 p.

Population monitoring of snow leopards using camera trapping in Naryn State Nature Reserve, Kyrgyzstan, between 2016 and 2019. Rode Julie, Lambert Claire, Marescot Lucile, Chaix Bastien, Beesau Julie, Bastian Suzanne, Kyrbashev Joldoshbek, Cabanat Anne-Lise. 2021. Global Ecology and Conservation, 31:e01850, 6 p.

RapGreen, an interactive software and web package to explore and analyze phylogenetic trees. Dufayard Jean François, Bocs Stéphanie, Guignon Valentin, Larivière Delphine, Louis Alexandra, Oubda Nicolas, Rouard Mathieu, Ruiz Manuel, De Lamotte Frédéric. 2021. NAR Genomics and Bioinformatics, 3 (3):lqab088, 6 p.

Genomic prediction of complex traits : methods and protocols. Ahmadi Nourollah (ed.), Bartholome Jérôme (ed.). 2022. New-York : Humana Press-Springer, 659 p. (Methods in Molecular Biology, 2467) ISBN 978-1-0716-2204-9