Résultats pour : "séquence d'adn"

Interpreting phylogenetic placements for taxonomic assignment of environmental DNA. Ewers Isabelle, Rajter Lubomir, Czech Lucas, Mahe Frédéric, Stamatakis Alexandros, Dunthorn Micah. 2023. Journal of Eukaryotic Microbiology, 70 (5):12990, 10 p.

Phylostems: A new graphical tool to investigate temporal signal of heterochronous sequences datasets. Doizy Anna, Prin Amaury, Cornu Guillaume, Chiroleu Frédéric, Rieux Adrien. 2023. Bioinformatics Advances, 3 (1):vbad026, 5 p.

Genomic screening for tolerance of coconut populations differentially exposed to coconut's lethal yellowing in Ghana using genotyping by sequencing. Garavito Guyot Andrea Maria, Rivallan Ronan, Bocs Stéphanie, Baudouin Luc, Yankey Egya Ndede. 2022. Phytopathogenic Mollicutes, 12 (1) : p. 70. TROPICSAFE Final Conference, San Giuliano, France, 3 Avril 2022/5 Avril 2022.

Swarm v3: Towards tera-scale amplicon clustering. Mahe Frédéric, Czech Lucas, Stamatakis Alexandros, Quince Christopher, de Vargas Colomban, Dunthorn Micah, Rognes Torbjørn. 2022. Bioinformatics, 38 (1) : 267-269.

De la paire de bottes à la paire de bases : de l'intérêt d'étudier l'écologie des viromes de plantes. Maclot François, Candresse Thierry, Filloux Denis, Rott Philippe, Malmstrom Carolyn M., van der Vlugt René, Massart Sébastien, Roumagnac Philippe. 2021. Virologie, 25 (1) : 29-42.

Genome Sequence Resource of 'Candidatus Liberibacter asiaticus' from Diaphorina citri Kuwayama (Hemiptera: Liviidae) from La Réunion. Lu Jinming, Delatte Hélène, Reynaud Bernard, Beattie George A.C., Holford Paul, Cen Yijing, Wang Yanjing. 2021. Plant Disease, 105 (3) : 1171-1173.

Molecular epidemiology of Xanthomonas euvesicatoria strains from the Balkan Peninsula revealed by a new multiple-locus variable-number tandem-repeat analysis scheme. Vancheva Taca, Bogatzevska Nevena, Moncheva Penka, Mitrev Sasa, Vernière Christian, Koebnik Ralf. 2021. Microorganisms, 9 (3):536, 19 p.

Screening for sugarcane yellow leaf virus in sorghum in Florida revealed its occurrence in mixed infections with sugarcane mosaic virus and a new marafivirus. Boukari Wardatou, Mollov Dimitre S., Wei Chunyan, Tang Lihua, Grinstead Samuel, Nouman Tahir Muhammad, Mulandesa Eva, Hincapie Martha, Beiriger Robert, Rott Philippe. 2021. Crop Protection, 139:105373, 9 p.

Spatial distribution of the different strains of the distinct coconut lethal yellowing-type phytoplasma species associated with the syndrome in Tanzania. Mpunami Anatolia, Pilet Fabian, Fabre Sandrine, Kullaya Alois, Dickinson Mathhew, Dollet Michel. 2021. Tropical Plant Pathology, 46 (2) : 207-217.

Coding-complete genome sequence of an african swine fever virus strain Liv13/33 asolate from experimental transmission between pigs and Ornithodoros moubata ticks. Chastagner Amélie, Pereira De Oliveira Rémi, Hutet Evelyne, Le Dimna Mireille, Paboeuf Frédéric, Lucas Pierrick, Blanchard Yannick, Dixon Linda, Vial Laurence, Le Potier Marie-Frédérique. 2020. Microbiology Resource Announcements, 9 (17):e00185-20, 3 p.

DNA metabarcoding as a tool for disentangling food webs in agroecosystems. Sow Ahmadou, Haran Julien, Benoit Laure, Galan Maxime, Brévault Thierry. 2020. Insects, 11 (5):294, 19 p.

Evaluation of un-methylated DNA enrichment in sequencing of African swine fever virus complete genome. Pereira De Oliveira Rémi, Lucas Pierrick, Chastagner Amélie, De Boisseson Claire, Vial Laurence, Le Potier Marie-Frédérique, Blanchard Yannick. 2020. Journal of Virological Methods, 285:113959, 7 p.

Full moonlight-induced circadian clock entrainment in Coffea arabica. Breitler Jean-Christophe, Djerrab Doaa, Leran Sophie, Toniutti Lucile, Guittin Charlie, Severac Dany, Pratlong Marine, Dereeper Alexis, Etienne Hervé, Bertrand Benoît. 2020. BMC Plant Biology, 20:24, 11 p.

A simple method for high molecular-weight genomic DNA extraction suitable for long-read sequencing from spores of an obligate biotroph oomycete. Penouilh-Suzette Charlotte, Fourre Sandra, Besnard Guillaume, Godiard Laurence, Pecrix Yann. 2020. Journal of Microbiological Methods, 178:106054, 8 p.

EST-SSR development for Digitaria exilis and its relatives D. iburua and D. longiflora from transcriptome sequences. Olodo Katina Floride, Gueye Mame Codou, Calatayud Caroline, Diop Baye Magatte, Kane Ndjido Ardo, Ngom Ablaye, Ntui Valentine O., Barreto Marie-Madeleine S., Uyoh Edak A., Abraham Salomon, Vigouroux Yves, Billot Claire, Barnaud Adeline. 2019. Plant Genetic Resources, 17 (3) : 280-284.

First report of crown and root rot of tomato caused by Fusarium equiseti in Algeria. Yezli Wassim, Hamini-Kadar Nisserine, Zebboudj Nebia, Blondin Laurence, Tharreau Didier, Kihal Mebrouk. 2019. Journal of Plant Pathology, 101 (4) : 1249.

GECKO is a genetic algorithm to classify and explore high throughput sequencing data. Thomas Aubin, Barriere sylvain, Broseus Lucile, Brooke Julie, Lorenzi Claudio, Villemin Jean-Philippe, Beurier Grégory, Sabatier Robert, Reynes Christelle, Mancheron Alban, Ritchie William. 2019. Communications Biology, 2:222, 8 p.

Genome-wide association mapping of date palm fruit traits. Hazzouri Khaled M., Gros-Balthazard Muriel, Flowers Jonathan M., Copetti Dario, Lemansour Alain, Lebrun Marc, Masmoudi Khaled, Ferrand Sylvie, Dhar Michael I., Fresquez Zoë A., Rosas Ulises, Zhang Jianwei, Talag Jayson, Lee Seunghee, Kudrna Dave, Powell Robyn F., Leitch Ilia J., Krueger Robert, Wing Rod A., Amiri Khaled M. A., Purugganan Michael D.. 2019. Nature Communications, 10 (1):4680, 14 p.

Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps. Belser Caroline, Istace Benjamin, Denis Erwan, Dubarry Marion, Baurens Franc-Christophe, Falentin Cyril, Genete Mathieu, Berrabah Wahiba, Chèvre Anne-Marie, Delourme Régine, Deniot Gwenaëlle, Denoeud France, Duffé Philippe, Engelen Stefan, Lemainque Arnaud, Manzanares-Dauleux Maria J., Martin Guillaume, Morice Jérôme, Noël Benjamin, Vekemans Xavier, D'Hont Angélique, Rousseau-Gueutin Mathieu, Barbe Valérie, Cruaud Corinne, Wincker Patrick, Aury Jean-Marc. 2018. Nature Plants, 4 (11) : 879-887.

Microbial island biogeography: Isolation shapes the life history characteristics but not diversity of root-symbiotic fungal communities. Davison John, Moora Mari, Öpik Maarja, Ainsaar Leho, Ducousso Marc, Hiiesalu Inga, Jairus Teele, Johnson Nancy, Jourand Philippe, Kalamees Rein, Koorem Kadri, Meyer Jean-Yves, Püssa Kersti, Reier Ülle, Pärtel Meelis, Semchenko Marina, Traveset Anna, Vasar Martti, Zobel Martin. 2018. ISME Journal, 12 (9) : 2211-2224.

Viral metagenomic-based screening of sugarcane from florida reveals occurrence of six sugarcane-infecting viruses and high prevalence of Sugarcane yellow leaf virus. Filloux Denis, Fernandez Emmanuel, Comstock Jack C., Mollov Dimitre S., Roumagnac Philippe, Rott Philippe. 2018. Plant Disease, 102 (11) : 2317-2323.

Genetic variation and population structure of Oryza glaberrima and development of a mini-core collection using DArTseq. Ndjiondjop Marie-Noëlle, Semagn Kassa, Gouda Comlan Arnaud, Kpeki Sèdjro B., Tia Daniel Dro, Sow Mounirou, Goungoulou Alphonse, Sié Moussa, Perrier Xavier, Ghesquière Alain, Warburton Marilyn L.. 2017. Frontiers in Plant Science, 8:1748, 19 p.

Tipdatingbeast: An r package to assist the implementation of phylogenetic tip-dating tests using beast. Rieux Adrien, Khatchikian Camilo E.. 2017. Molecular Ecology Resources, 17 (4) : 608-613.

Tomato leaf curl Burkina Faso virus: A novel tomato-infecting monopartite begomovirus from Burkina Faso. Ouattara Alassane, Tiendrebeogo Fidèle, Lefeuvre Pierre, Claverie Sohini, Hoareau Murielle, Traoré Edgar Valentin, Barro Nicolas, Traoré Oumar, Lett Jean-Michel. 2017. Archives of Virology, 162 (5) : 1427-1429.

Characterization of microsatellites identified by next-generation sequencing in the neotropical tree Handroanthus billbergii (Bignoniaceae). Morillo Velastegui Luis Eduardo, Buitron Johanna, Limongi Ricardo, Vignes Hélène, Argout Xavier. 2016. Applications in Plant Sciences, 4 (5):1500135, 4 p.

Diversity and pathogenicity of the Ceratocystidaceae associated with cacao agroforests in Cameroon. Mbenoun M., Wingfield Michael J., Begoude Boyogueno Aime Didier, Nsouga Amougou F., Petchayo Tigang Sandrine, Ten Hoopen Gerben Martijn, Mfegue Crescence Virginie, Dibog Luc, Nyassé Salomon, Wingfield Brenda D., Roux Jolanda. 2016. Plant Pathology, 65 (1) : 64-78.

Modelling the influence of dimerisation sequence dissimilarities on the auxin signalling network. Legrand Jonathan, Léger Jean-Benoist, Robin Stéphane, Vernoux Teva, Guédon Yann. 2016. BMC Systems Biology, 10 (22), 17 p.

Molecular phylogeny of Southeast Asian arboreal murine rodents. Pagès Marie, Fabre Pierre-Henri, Chaval Yannick, Mortelliti Alessio, Nicolas Violaine, Wells Konstans, Michaux Johan, Lazzari Vincent. 2016. Zoologica Scripta, 45 (4) : 349-364.

PCR-based identification of cacao black pod causal agents and identification of biological factors possibly contributing to Phytophthora megakarya's field dominance in West Africa. Ali Shahin, Amoako-Attah Ishmael, Bailey Rebecca, Strem Mary, Schmidt Martha, Yaw Akrofi Andrew, Surujdeo-Maharaj Surendra, Kolawole Oluwaseun O., Begoude Dider, Ten Hoopen Gerben Martijn, Goss Erica, Phillips-Mora Wilbert, Meinhardt Lyndel W., Bailey Bryan. 2016. Plant Pathology, 65 (7) : 1095-1108.

Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity. Bredeson Jessen V., Lyons Jessica B., Prochnik Simon, Wu Guohong Albert, Ha Cindy M., Edsinger-Gonzales Eric, Grimwood Jane, Schmutz Jeremy, Rabbi Ismail Y., Egesi Chiedozie, Nauluvula Poasa, Lebot Vincent, Ndunguru Joseph, Mkamilo Geoffrey, Bart Rebecca, Setter Tim, Gleadow Roslyn M., Kulakow Peter, Ferguson Morag E., Rounsley Steve, Rokhsar Daniel S.. 2016. Nature Biotechnology, 34 (5) : 562-570.

Draft genome sequence of an alphaproteobacterium associated with the Mediterranean sponge Oscarella lobularis. Jourda Cyril, Santini Sébastien, Rocher Caroline, Le Bivic André, Claverie Jean-Michel. 2015. Genome Announcements, 3 (5):e00977-15, 2 p.

Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome. Roux Brice, Bolot Stéphanie, Guy Endrick, Denancé Nicolas, Lautier Martine, Jardinaud Marie-Françoise, Fischer-Le-Caux Marion, Portier Perrine, Jacques Marie Agnès, Gagnevin Lionel, Pruvost Olivier, Lauber Emmanuelle, Arlat Mathieu, Carrère Sébastien, Koebnik Ralf, Noel Laurent D.. 2015. BMC Genomics, 16 (975), 19 p.

Pantoea coffeiphila sp. nov., cause of the potato taste of Arabica coffee from the African Great Lakes region. Gueule Dominique, Fourny Gérard, Ageron Elisabeth, Le Flèche-Matéos Anne, Vandenbogaert Mathias, Grimont Patrick A. D., Cilas Christian. 2015. International Journal of Systematic and Evolutionary Microbiology, 65 (1) : 23-29.

Sequence and polymorphism analysis of the camel (Camelus dromedarius) myostatin gene. Muzzachi S., Oulmouden A., Cherifi Y., Yahyaoui H., Zayed M.A., Burger P., Lacalandra G.M., Faye Bernard, Ciani Elena. 2015. Emirates Journal of Food and Agriculture, 27 (4) : 367-373.

Genetic relationships of some Citrus genotypes based on the candidate iron chlorosis genes. Aka Kacar Yildiz, Simsek Özhan, Dönmez Dicle, Boncuk Melda, Yesiloglu Turgut, Ollitrault Patrick. 2014. Turkish Journal of Agriculture and Forestry, 38 (3) : 340-347.

Identification and characterisation of a highly divergent geminivirus: Evolutionary and taxonomic implications. Bernardo Pauline, Golden Michael, Akram Mohammad, Naimuddin, Nadarajan Nagaswamy, Fernandez Emmanuel, Granier Martine, Rebelo Anthony, Peterschmitt Michel, Martin Darren Patrick, Roumagnac Philippe. 2013. Virus Research, 177 (1) : 35-45.

Molecular diversity of cotton leaf curl Gezira virus isolates and their satellite DNAs associated with okra leaf curl disease in Burkina Faso. Tiendrebeogo Fidèle, Lefeuvre Pierre, Hoareau Murielle, Villemot Julie, Konaté Gnissa, Traoré Alfred S., Barro Nicolas, Traore Valentin S.E., Reynaud Bernard, Traoré Oumar, Lett Jean-Michel. 2010. Virology Journal, 7, 10 p.

A combined analysis of morphological traits, chloroplast and nuclear DNA sequences within Santiria trimear (Burseraceae) suggests several species following the Biological Species Concept. Koffi K. Guillaume, Heuretz Myriam, Doumenge Charles, Onana Jean-Michel, Gavory Fréderick, Hardy Olivier J.. 2010. Plant Ecology and Evolution, 143 (2) : 160-169.

A comparison of six primer sets for detection of Trypanosoma evansi by polymerase chain reaction in rodents and Thai livestock. Pruvot Mathieu, Kamyingkird Ketsarin, Desquesnes Marc, Sarataphan Nachai, Jittapalapong Sathaporn. 2010. Veterinary Parasitology, 171 (3-4) : 185-193.

Molecular genetics and breeding. Soh Aik Chin, Mayes Sean, Roberts Jeremy, Zaki Noorhariza Mohd, Madon Maria, Schwarzacher Trude, Heslop-Harrison Pat, Ithnin Maizura Bint, Din Amiruddin Mohd, Ramli Umi Salamah, Othman Abrizah, Zulkifli Yaakub, Low Eng Ti Leslie, Ong-Abdullah Meilina, Singh Rajinder, Teh Chee Keng, Kwong Qi Bin, Ong Ail Ling, Mohamed Mohaimi, Apparow Sukganah, Chew Fook Tim, Appleton David Ross, Kulaveerasingam Harikrishna, Teh Huey Fang, Mebus Katharina, Neoh Bee Keat, Ooi Tony Eng Keong, Wong Yick Ching, Cros David. 2017. In : Oil palm breeding : genetics and genomics. Soh Aik Chin (ed.), Mayes Sean (ed.) , Roberts Jeremy A. (ed.). Boca Raton : CRC Press, 225-281. ISBN 978-1-4987-1544-7

Ecologie et taxonomie intégrative des moucherons piqueurs du genre Culicoides Latreille (Diptera : Ceratopogonidae) en région Afrotropicale. Bakhoum Mame Thierno. 2017. Montpellier : AgroParisTech, 176 p. Thèse de doctorat : Sciences de l'évolution et de la biodiversité : AgroParisTech